RNA id: XM_007259314.3


Basic Information

Item Value
RNA id XM_007259314.3
length 1963
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC103031150
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6698639 ~ 6704998 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaaaagacCAACCTTATCTTGTATTTGTATCCAGACTGGCCTGAAATGTGGTTTAAGAACATGTGCATTCATTTGGGATAGAATGTGGTGTTGATTAACCAGACTAAGGGGCTTCGGGAACATTGGGGTGATTAAGTGGAGGCTGCAAACTTCTCCACTGAGACAGACGGCTGGGAAGCAAACCTGTGGGAGTAGCAGAAGAATGGGACAAATCAAGACATATAACCACTAGGAGGTGGCTTTGGCCATACATGGCTGATAACTTGGTAGCTTTGGCCAGCGGTCTGTCTGCTGTGCTTCTGTTTCTTTTGCTAATTGTTCTGACAGTCTATCTGTTGTGGAAGAAGAGGCAGGACCAGAGACAATACCAACAACTGATCAGCACTAACCCCACTATTCCTCCATGCACTACTGTTCTCCAAACTTCACACTCCAGCAGCTATGGCTTGGCTGAAGTCCCCTTTTTTCTGCCACCAAGCTTCAAGAGATTAGCCCACGTTGAAGAGAATAAAGGGAGGGAGGAAGAAGAGCAATGGGAGCACCAGCCGCAGCTTCACAACCAGCGAGGGTCTCTGACTATAGGCAGCTGGTTTCCTCTGGGCAGCCTGAGGCCTGACCTGTACCGGCTGCCCGAGGAGCCCAGTGAGTGGGCAGAGCCGGGGGGCTCCAGCATGCGGCTGTGTTTCGCTGTGCAGTACTGTCAGGAGAAGGAGCAGCTGGTGGTCACTCTGCTCCGAGCTGCTAACCTGCCTGCCCACTGCCAGGCCTGCACCACACTGATCAAACTGCAGCTCCTGCCATCTGAAGACCGGCGCCAGCGGCAGGCCAAGGCCCGGGGCAAAGGCTGCCAGCCGCAGTTCAACGACAGCTTTGTGTTTCAGGTGTCTAATATCAGTGTGGGCCAGTGTACACTGAGCatgagtgtgtacagtgtggaCCGTCTGAAGAAGCACCACACAGTGGGCCGGGTTCTCTTCCCTCTCAGACTGTCTGATCTCAGAGAGGCAGCAGGAAAAGTGCTGTGGAGGGACCTGGAGACTGAAAGTGATTTGGCCCTGTCAAAGCATGGCGATATCCAAGTGTCTTTAAACTACAACCAGTCCCTACAGCGCCTCACTGTGGTCGTTCTTAGAGCTCGAGGACTCCAGTGTTCCAGCAATGCTGGTGTTTGTGTCCAGGTCTCTCTGCAGATACACACTCAGGTAGTGAAGACAAAGTGGACTTCAGTAGCCAAAGGCAGTGAGCCCATCTTTAACGAGAAACTGACCTTTAGGCTTCATCCTCGGCAGCTAGATACAACCTGTCTGAGCCTGGAGGTCCAGCAGCCTGCCACAGAGGAGCCCTCTGAATGCCAACCAACTCCCAGAACCACAGCACCAATGTCACTGGGGGTAGTGGTCATTGGGCCATTCATGTATGCCAGAGGCAGGGAGCTGGAACACTGGACCGAAATGGTGAGCAAGTCACATGAGCTGGTGAAGCAGTGGCACGGCCTGGGAGCAGCTAATGCCATTCACAGTCCAACCTGAACCACACAGTTCACGCACACAATGACCACAGAATCTTTATTCACAAATCTACTATTTCTAAAAGAGGACAATGCTTCCTATTCTTCATTATCTGCACAAGATACACTTTACACGTTTTATATAAGGCAGTTATATGGTGGTTATAAGGTGGTTAACCAACTAATTCCGTGATTGAggtatgtttttaaaaactgccttttatatacataaaaaaggcTTTTAAGAAATGAACAGACATAACATCTTTATTatgacattcattcatttagataCATTAACCTCTAGGGTAGAATTAACTAAGAGttgtataattgtattttttttttatttctttaattgtgctTCACATTGATAAAATAggacaaaaacaaataattgtGGCAATGTCTTGTCATACCATGTatataaaacagtttattaaaagttgCATTA

Function

GO: NA

KEGG:

id description
K19914 SYT15; synaptotagmin-15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47011 lncRNA upstream 8500 6689792 ~ 6690139 (+) True G34923
TU47004 lncRNA upstream 28648 6669762 ~ 6669991 (+) True G34916
TU46988 lncRNA upstream 34656 6663657 ~ 6663983 (+) True G34903
TU46985 lncRNA upstream 35032 6592607 ~ 6663607 (+) True LOC103029551
TU46972 lncRNA upstream 157179 6502145 ~ 6541460 (+) False slc38a10
TU47020 lncRNA downstream 13792 6718790 ~ 6719186 (+) True G34930
TU47121 lncRNA downstream 104230 6809228 ~ 6942271 (+) True G35012
TU47129 lncRNA downstream 175485 6880483 ~ 6891804 (+) True G35016
TU47130 lncRNA downstream 175485 6880483 ~ 6891804 (+) False G35016
TU47131 lncRNA downstream 187507 6892505 ~ 6897393 (+) True G35017
XM_007259311.3 mRNA upstream 18618 6675542 ~ 6680021 (+) True LOC103030206
XM_007259309.3 mRNA upstream 35052 6619670 ~ 6663587 (+) False LOC103029551
XM_007259310.3 mRNA upstream 37987 6619671 ~ 6660652 (+) False LOC103029551
XM_007259308.3 mRNA upstream 110019 6583214 ~ 6588620 (+) True prph2
XM_007259307.3 mRNA upstream 117380 6579898 ~ 6581259 (+) True tbcc
XM_007259362.3 mRNA downstream 28313 6733311 ~ 6776528 (+) True LOC103046215
XM_007259318.3 mRNA downstream 73204 6778202 ~ 6877033 (+) False LOC103031986
XM_007259317.3 mRNA downstream 75748 6780746 ~ 6877033 (+) False LOC103031986
XM_022669021.1 mRNA downstream 117506 6822504 ~ 6877033 (+) True LOC103031986
XM_007259325.3 mRNA downstream 316849 7021847 ~ 7028159 (+) False LOC103033683
XR_002649861.1 other upstream 35052 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 37388 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 2520556 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 4641765 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4861063 1837505 ~ 1837576 (+) True trnaq-cug_1
TU47021 other downstream 25956 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 197419 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 3768376 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 3768376 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 4289363 10994361 ~ 11001539 (+) False dock1

Expression Profile