RNA id: XM_007259330.3


Basic Information

Item Value
RNA id XM_007259330.3
length 7073
RNA type mRNA
GC content 0.46
exon number 24
gene id sec24c
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7002140 ~ 7020769 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGGTGCGAATGTCAGCTGTAGCGGAGACACCGAGGAGGTGGAAGAGGGATTAACGACGGCTAACGGCGAGACCGCTTTGGGAAGACGACGATTGTACTCTTGGTTTTGTAGAAGAGCGCCTGTCAGCTGGGGAACGGGCGTGGCTGGCTGTCCTGTTAGCTTGTTCGTTTATATATCTGTCTGGATTGGAGATTTAGTGATGAACTGAAAATGAATGTTAACCAGCAACCTCACATGGCCTCTCCTTATGGGCAGCCGCAGCCTGGCTACCAAGGCTACCCTCAGTCTGGTTATGGGGGCCAGCAAGTGCCAGGTGGTTATCCAGCCCAATTTGCGCCATACAATGGCCCAGCTTCTGCCTACCAACCAGGCCCACCTCAAGGTGTTAGAGGACCCCCCACCTCTGGAGCACCCCCAGTGTCTGCTGCTCAGGCATATTCACAGTTTGGCCAGGGTGAAGTACAGAATGGACCGCCAGCAATGGGTCCCCCGCCACAGAGGTCGCCAGTGTCTCAGCCATACAGTCAAGGAGCGATGAACCTCACTGGTCCTCAGCCTCAATATAACCAGCAGTTTGGTGCACCACCAACCAGTATGCAGCAGATGACCACTCAAATGGCAGGCATGCAGGTTGGATCCACCGTACCTTCTCCTGCAGGCCCAGGCTATGcTCCTCCCACAATCTCCCAGGCTCCTGTTTCTGCTGCTTACACACCTTCAGACCCTTCTTCTTATGCCCCCACACCTACTGTCCCCTCTCAGCCCCCACCAGCTGAGAGAGTGCCTCAGAGTACACCTTCTCAGCCCTACTATGGAGCACCTGCTCAGCAGCCTTTCCCAACTGCAGCCCCACCTTTCTCCGCTCCTGGTCCTGCCCAGGCCCCTGCTCCACCTCTTGCCTCACAACAATCTTTCCCTCAAGGCCCTCCTCCCTCTCAACCACCGTTTTCTTCAGCACCACCCCAAGCTCCTCCGACTGCGTCGTATGGTGGTCCGCTTCCCCCTGTGCAGGCGCCTCACCCTAGGGCACCACCTCCTACTTCACAGCCTTCTGCATTCCCTGGAGGACCCCCACCCACCTCGACTCTGTCTCAATATCCAGGACCACCCATGCCACAACAGTCTCCTGTGTCCCAGCCCTCACCTTTCCACTCAGGACCTCCTCCTCTACCCACCACTGCTGGTGGGTTTCCTCCCCAAGGAGGTGCTCCTCCCAGGCCCCTGCACCCAGGGATGCAGGGTCCCCCTCTGGCCTCTCAGGGACCTCTGATGTCCCAAGCAAACCATGTAGCTCCCCCACAGCCTGGTATGCTGCCTGGGCAACCCACAGCTGGTATGGCCggaccaccaccaccacaacagCCAGGAATGCAGGGCTATCCACCACAGCAGAATGGGGCTTTTGGGCAGGTGAGAGGTCCACAACCTGGCTATGCCGGACAGTATCCTGGACAGCAGAATTATGGGGCTGCACCTCCTGCACAGGCTCCTGCACCCTCTGCACCAAAGAGACTTGACCCAGACTCCATCCCCAGCCCGcaaGCCTCTGACATACCGCCTGTGCAGAAAACACGACATAGAATAGACCCAGACGCTATTCCCAGCCCAATTCAGGTGATTGAGGATGACAAAGCAAACAAAGGTAGTGAGCCTTTTGTCACAGGGGTCAGAGGTCAAGCCCCTCCTCTTGTCACTACTAACTTTCAAGTTAAAGATCAAGGAAATGCAAGTCCACGGTTCATCCGATGCACATCCTATAACATGCCCTGCACCTCAGACATGGCCAAACAGTCCCAGGTGCCCTTGGCTGCAGTAATCAAGCCCCTGGCTACTCTGCCTCCAGATGAAATTCCCCCATATATAGTGGACCATGGAGAAGGTGGTCCTATTCGCTGTAACCGCTGTAAGGCCTACATGTGTCCCTACATGCAGTTCATTGAGGGTGGCCGACGCTTCCAGTGTGGTTTCTGCAGCTGCGTCACAGAGGTGCCTCCCCATTACTTCCAGCATCTGGACCACACAGGGAAGCGTGTAGACTGCTGTGACCGACCAGAACTCTCTATGGGCAGCTATGAGTTTATGGCCACAGTGGATTACTGTAAGAACAACAAGATTCCCCAGCCCCCTGCTTTTATCTTCTTGATCGATGTGTCATATAATGCTGTGAAAAACGGCATGGTGAGAATGGTATGCCAGGAGCTCAAGACCCTGTTGGACTATTTGCCCAGagAAAACCCTGATGTGCAATCCAATATACGAGTGGGCTTTGTAACCTACAACAAAGTACTGCATTTCTATAACGTGAAAGCATCTCTGGCCCAGCCTCAGATGATGGTGGTCTCGGATGTAGCGGACATGTTCGTACCCCTCTTGGATGGATTTCTTGTTAATGTGTCCGAGTCTAGGGTTGTGATCGAGAGTTTGCTGGATCAAATACCCGACATGTTTGCAGACACTCGGGAGACAGAGACCGTGTTTGGCCCTGTTATCCAAGCAGGGCTTGAAGCACTTAAGGCTGCTGACTGTGCTGGAAAGCTCTTTGTCTTCCACTCCTCTCTGCCCATTGCTGAGGCTCCAGGCAAGCTGAAGAACAGAGAGGACAAAAAACTGGTGGGCACAGACAAAGAAAAGtcaTTATTCCAGCCCCAAATAAGCTTCTACGCTAACTTGGCCAAGGAGTGTGTAACGCAGGGCTGCTGTGTGGATCTCTTCCTGTTTCCTAATCAGTACGTGGATGTAGCCACTTTAGGGGTAGTCCCCACATCAACAGGGGGTTCTGTCTACAAATACACATATTTCCAGGCTCAGTCTGATCAGGAGCGGTTCCTGAATGATCTTAGGAAAGATGTGCAGAAGCCAATGGGCTTTGATGCAGTGATGAGAGTCCGAACCAGCACTGGTATCCGGGCCACAGACTTTTTCGGTTCCTTCTACATGAGTAACACCACAGATGTGGAGCTGGCAGGCTTGGACTGTGACAAGACTGTCACAGTGGAGTTCAGACATGACGACAAGCTCAGTGAGGAGACCGGCGCGCTCATGCAGTGTGCTGTACTTTACACCAGCTGTACTGGTCAGAGACGGCTACGTATCCACAACATGGCAGTGAACTGCTGTGCCCAGCTAGCTGACCTATACCGGAACTGTGAGACAGATACCATCATAAACTACTTTGCCAAGTATGCATATCGCAGTATTCTCAACAACCCTACCAAGAATGTGCGGGACAGCTTGGTCAACCAGTGCGCCCAAATCCTGGCATGCTACCGCAAAAACTGTGCCAGCCCATCCTCTGCTGGTCAGCTGATCCTCCCAGAGTGTATGAAGCTGCTGCCTGTTTATCTAAACTGTGTTCTGAAAAGCGATGTTCTGCACCCTGGAGCCGATGTCTCCCTGGACGACCGCGCCTACCTGAGACAGCTGGTCAGCGCCATGGATGTGACCGAGAGCCATGTGTTCTTTTACCCACGACTGCTACCAGTGCACAAGCTGGATGTGGAAAGCGATGCTCTTCCTGTAGCCATTAGAGACTCTGAGGAAAGGCTGTCCAAAGGGGGAGTATACCTGCTGGAGACTGGCTTGAACCTGTTCCTCTGGGTGGGGGCTAATGCACAGCAAGAGCTCCTACAGAACATTTTCGGCACTCCTGCATTCAGCCAGATAGACCCCAGCATGACCTCTTTGCCGGTTTTGGAGAATCCGTACTCGAAGAGGCTGAGGGAGATTATTGAGTCTTTCCGTATGCAGCGCTCTCGCTACATGAAGctGATGGTGGTGAAGCAAGAAGACAAACTGGAGCTGATCTTTAAGCACTTCCTTGTGGaggacaaaaacaacagtggCGGAGCATCATATGTGGACTTCTTGTGTCACATGCACAAGGAGATTCGTCAGCTCTTGAGCTAGGAGAGCCCATGTGCCCTTTACTCAGATGCGCTTTATcctttttatttgacaaaataataaattaaatcccTCCTCCCAtcatttttctcctcctcttatATAATCTTCTCCAGGGCGAGGGGAAAAAGCCACCTGTTATTAGGTTCAGGCAAGGATTCTCTATTTGAGGACTGTATGGTTTATGGTTTTGGGTAGGAGGATTGCAGGATTGTCTGGTTGTATGTGTGTCCGTGTGCATGAATGCTTGTAAACATGAAATGTGTATCAGATGCATTTGATCAATCCTTAGCTTGTCATAGCTCCTCAACTATTGGGATCACTTCATTCAGAAGATtcaaaagtgcaaaaaacagaTGTACACTTCTCAATCATGAAGTAGGGGCTCAAGTAGGCtttgtgtgtgcgcgcgcttGCGAGTATGGGGGTTGGCGGTTGGACTGTGAACAGGCTGATACTGGGGGAAACACTGGCACTGTACTGCGGGTGGGTATATGGGAGGCATCATGAACTGACAGCATTAATGATTGAACCAGAcgttcttacaaaaaaaaaagacaacaaacaGAAGATCTTGATTATGAAACATGAAACTTTCCTAATAACTTATTGTTTTCATGAATGTTTTGTTCAGTTAgtccttgtttgttttctttcaaCCATGGCCTTACTGATCCCATTTCACACCCATTTCCTGCTGTTtgattttatagattttttttcttgttaccCTCATTGTAATCCTTCTTGTTTttaaagtgtgcaaaaaaaacaaacagaatccTTTTGACTAATAGATTATGTGGGAAGCTGAGTGTATTTTAAGTGTGCTCTTCACTGTCTTTATGAACATCTTAACTCTTGAGATATAGCTAACTCACTATAACAATTCTATGCATCAGCTTAGCTGTGGTTGGAGGAGCTGTGTTGGCTAAATTTAAATGGGAACAGAAATTGTGCCGTTATTTGGCAAAGCCAAACTTGTGGCAACCCTGGGCATGCATAGCGCTGTGTTCTGGTAATAATTAAATGAACGAATGAAGGATTCTCCTATTGTGGAGAGTGTATGGACCCTTTTGGAAACACCTCTGATCTGACTGATCCGGAAGTTATAGTTCGAATAAGCCAGCTGGGTGGGAATCTCttggttgagtgtgtgtttttttttttttttttttttttttttttttttaagcaattataTTAAAGAAGATGGGGAAATATTATAGTTCATGTGGGAGTCCATCTTCACTAGTTGCTTCACTACTTGGGCGTATACATATATcccacagaaacagaaaaaaaaaatacatacaggcATTTACTGTTCTTGGATGTTtgtggattatttttttctctatcttttttttccccctttgtTTAAATTTGATTTACTGGTAACCACAAATGCCCCAATCATTCTGTATCATTCTCTGATCTAATATTGTTTtctaaatctgtgttttaaagGGTTATAATCCTAGGACCGCTCAGAGAGCCTGGTGCTGGCTTCCTTACAGCTGAGCATGAGTGCTCCACTGGCCCGGTTGtgtctctttctttgtttctagtGAAACCTTTGTAAAAATGAAAGCATTTGGCAAGAGAGTGGAGTGAGTGATTGATTTAGAGCTGCCGATTTCTTTACCGTTTTCCAAGTGAGCGCAGTTTTAAAGCACATGCGGAATTGTGACCTGAGAAGCAATCAACACTGAATACCTTGTCatcacatttattattacatgtacagaattaaaaatcacattttaaaaaccaCGCTCAGCTAGTGTGCTTTGTTCGATTGCATCaagcagctaaaaaaaaaaagaaatgcaaagCCAAGTTGTCTGTCAGAGGCTAGGAGGAGTGTGATGTCATCTCagatttcctctttttttcccctgctatattttttcccatttttgtttAAGCCTTCCATCATCCTTCATAGCATTTAATAATCCTGTTGAATAGTCCTGGTGAAGtaaggctgtgtcccaattgcgTAGTGCACACATACTACAGgctatattgtcactgtccaataaaatgCATGCATCTCCAAAGTGATTACAGGAGAATGCTAAAAAGTTCACTTTGaatggaagttaatgtaaataagagttgttgtttttttccccccagtaATTTCagagcatttctgttggtctgTTCTTCCAGAATTCTTTGCACATTGTACAGATTAGCAATAGAGCTCCAATGAAAactaaaatgcacaaaaagggAGAACATGTTATGTTGGACAGTGATTTACTATATACTAATCTTAATAGAGTGGGTTCAGCAGGTTGgtacacaaaatattacatACTAACCTGTTTTGTACTAAGAGAAATTGATGAAGCATCAAAACATACATCACTGAAAGTACTCCATCCGCTGCACTTAACATTAtcaggtgattttttttcctaatagtGTTCCAGATGTGAATAGCTCATCCCTTTctgttttgcattgcattgtgggataatGGTGTGCATCAGTGCACGCTTACTCAAAAATGACCGAAAAATTTGTTAGTTAACATGAGTTAACATAATTTTTATCTGTGCTACATTCTTAATATTCAAACCCACTTTAGTGTTGTTAAATAATATGCAATTGGGATGCTCCCTGTGTGTTGGAATTGGTGAAAAAAATTCTTAGTGTGTCCCACTgtaattttggcagtgtgtgtgtgtttttgtttgtttgtgtgaagGTAGATCCCAGTgaagctgctttttttttttaattgaagtaCTGAGGGATCTGCTTTAAATAGTTCTGTTTTTGGTTCTTAtccatttgcattttttttgtatttttttttctccttttaatTTCTTTGTTCTCCATAACCTCAAACTCTTTTCACTGTCTGTTTATGATCACTACTGTTCTATCTATGACATCTAACTGCAAATAAACTGGTTTTACTTTTCTTCAGTCACATCAGTCCTGGCTTCTACAGGCCATCGAGTGTATGTACCATCTCATGGATCACTTTCTGAGctggcttctttttctttcttttgtatcATCAGTTGTGAATGCTCCATAGGTCCTTTAGCTCGTGCCGTCGTTGCAAGGGAAGTGTGACTTACGAATGACTTTGAAAAACctgaaatataaaatgattaaagtgGTTGTTTTAGAATATTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47220 lncRNA downstream 40147 6961173 ~ 6961993 (-) True G35069
TU47100 lncRNA downstream 270641 6730942 ~ 6731499 (-) True G34998
TU47099 lncRNA downstream 272986 6728861 ~ 6729154 (-) True G34997
TU47093 lncRNA downstream 312530 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA downstream 312530 6688341 ~ 6689610 (-) False LOC103030829
TU47229 lncRNA upstream 13961 7034730 ~ 7035818 (-) True G35077
TU47231 lncRNA upstream 15492 7036261 ~ 7040642 (-) True G35078
TU47266 lncRNA upstream 43756 7064525 ~ 7066706 (-) True G35094
TU47273 lncRNA upstream 56456 7077225 ~ 7077629 (-) True G35099
TU47316 lncRNA upstream 101714 7122483 ~ 7123019 (-) True G35135
XM_022669024.1 mRNA downstream 9039 6886709 ~ 6993101 (-) True LOC103032713
XM_022669023.1 mRNA downstream 9222 6886709 ~ 6992918 (-) False LOC103032713
XM_022669022.1 mRNA downstream 9222 6886709 ~ 6992918 (-) False LOC103032713
XM_022669026.1 mRNA downstream 9223 6886709 ~ 6992917 (-) False LOC103032713
XM_015608344.2 mRNA downstream 9228 6886709 ~ 6992912 (-) False LOC103032713
XM_022669034.1 mRNA upstream 48440 7069209 ~ 7075841 (-) False faap100
XM_007259335.3 mRNA upstream 48440 7069209 ~ 7075841 (-) True faap100
XM_007259336.3 mRNA upstream 76273 7097042 ~ 7104020 (-) True chad
XM_007259338.2 mRNA upstream 92357 7113126 ~ 7115766 (-) False armc7
XM_007259339.2 mRNA upstream 92357 7113126 ~ 7115764 (-) True armc7
TU47076 other downstream 348555 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 460776 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 488439 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 1062740 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 1073986 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 1904059 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2183801 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2405306 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2406067 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2406067 9426836 ~ 9431228 (-) True rpl38

Expression Profile