RNA id: XM_022669034.1


Basic Information

Item Value
RNA id XM_022669034.1
length 2872
RNA type mRNA
GC content 0.46
exon number 10
gene id faap100
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7069209 ~ 7075841 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTTGAAACAGGCGCGCTGGCTGCTGTGGTAGAATGTAATACTACAGAATAAAAGTCTTAAAGTGTCAGAGAGCGATATTAAATGTGCAGTTATGCGGGCTGTGGACGGGCAGTGGTGAGTAGGTGGTAGGTGGTAGGGGGGTAATGGAGCGGGTGAGGAGCTCTGTGAGCTGCTGGGCTGAGTTTGGTGATTTACTCTGTGGAGAAGTTCTTCACTCTGGGACTGAAGTGCTGCTCACCACCGGCTCCAGAGACCTGCTGCTCTTTACTGCTCAACACAAACGGGTTAAGACGATCCTGCAGTTTGATTCTCCAGTGACCTCCTTTGCGTTAAGTGATGATAAGAGTCACCTTTATGCTCTTTGCCAGAATGATGGGCTGTATTGTACTACTCTCTCCCTGGAATCCAGcTCTCACTCTCAGACAACACAGAATTGTGATGACTGTATTGTGTCCACAGTATCCAGGGATTCTCTGGTTGTCGAGGACAGGAATTTGCAATCATTCATTCTAGTAGAGGGCATCATTGTCACAGTCGGTCTGCAAGAGTCCTTTTGGAGTTTTGACTTCTATGAAGTACCAAACTGTTCAACAAGAGCTATAGACTATCGAAAGCGGGCAGGTTTGCAAGTCCCAGCTGTTGCAACAACGATCCCTCACACTACAGAGGATGCAAGAGTTTGCTGCATTTACCCTAGCAAAGACTCTGCATCTAAGCGATGCACCCATCAACATCATTTCTATCTTGAGCCTCTCCTATTCCGGCTCTTGTTCGGAGTTGATGCATCGCTTGCTCATTCTCCAGTAGTTCTTTGTGGTTTACCTGATGGACGTCTCTTCTGTTTCCCCCCTCTCCTCCCATCATGCGGAGAGCAGGGGCCGCAGTGTCTGGTAGTGGCCGGTCAGATGGGTCGAATTCTGCTGATCAGGGCTAATAAAGCAAACTCTGATGGAAAAGCAGCAGATTACAGTTTCATTGAGCAGACTGTGCGGGGACCTGTGGTGTGTGCTTGTGTAGATGGAGAAAACCTATACTACAGTACCTCTACACACTTGCTGACTGTGCAGCTGAACAGTTCTGcaacatcaccatcatcatccttATCAGCAGCAAAAGAAAAGCAACCAGAGAGGCGGACTCTTCCCTTTCAGAGTGCTGTTAGTCTGAGTGTGTGCCGAGTGATCGCACTAGCTGAGCCTCTAATTACGCCAACAGGCTGTGTGCAGTTGCTGGCTTTGTGTCTGAGTGGGAGACTCCTTCAGGTGACAGTTCCTCAAAGGACAGAAAAAGACTCTGCATCTAAGATTACTTCAACACAAGTGGGCCAAACAGTGAAAGACCTCTTGGCTGGGATTGGAAATGTTTGGGAGAGAGCATCATCACTGAAGCACCAGCTGCAGGTGAATAATAATGTGCTCAAGCATTTGAATCAAGTCATCAACATCTGCAACCTGCTTCTAAATTCTcagaaaaaagaccaaaaaggTAGCGACTGCAAGCCACCAATCAGCTGTCATGGCACAGCTAAGTGGAGTACTCTGCTGCAGAAAGACACTTTAGTTCTTACGTGTTCATTGGAAAACTCTAGCAATTCTGCACTGGAGGAAGGTTGGACACTCTGCGTTGAAATTGAGTCACCCCATTCCCTCAGAGCTGAGGGCTCTTCTAGAACTTACTCCTTTGCTTTGAAGAAGCTAGACTGGGGTCAGAAAGTTGATGTGAGTGTACCGCTCGATGTTGGAGCCGAGCTATTTCTCCCGGTCAAAATCCACTGCTTCCTTGTCTTCTCCCTACAGTCATTACTGCACTCTAAAGAATCCAGTGGTGACCCAGTATCTCAGCATCTAGCAGATAAAGGCTGCATTAGTCTCGCTCTGAACACTTTGACTCTGGACTGGATAGATTCTTTAAGGATAGGAGAGCCAGCATCACATGGTGAGATTCCCGAACAAAATACAGCGTGGGAAGCCACACATTTCTTCCTCAGCTCTAGGCGGATTTGCATGAAGGAACAGCCTATGCCACAGTCTGGTCCCCATGTTGTAGCTATACAGATATCCTCAGAGCTTCTAAAGACCTGGCTTGGTTTCCATGACTGTAGCACTGCAGCACTGTGCATTTCTGTGCTGAGATGGCTGATATCAGGAACATCTGAAGCAAAGGGACAAAATCTTGTTGAGGGTCCAGTGCTGTGTGCCCGTGGGCTGGACGGACAACCAGTCAGATTGTTGACCAAAGAGGTTATCCTAAGTGACGTTAACTCTGAAGGACCCCTATCTGCTGTGGAGGTTCAGATGGAAAGCTCCTCAATGTCCGCAGTATGTGGACTACACCATGCTGTGCTGCGACGTGTGCAGgGCCTTCTACAAGATGCTTCAGTGAAAAGTGTGAGCCCTGCACATTTAAGAGGACAGTATTTGTGTGAGACCATTCGACATGCTGAGTCTCTTTACAAGGACTTGCAGGACTCTCGTGCTTCAGCTGCTTTTGGAGGAGTGATTAAGACAAGGACTTCACTGTTTCCTCTCTACTTGGAGCTCAGAAAGCACCCACTGCTCATTCTCTGACTGcatgaaaaaaggaaattaaaagtATAACGGTGAATTTTCTAATTTAATGGAGCATTTTTGGACAGCCCACTGTAGAATACGGTATATATGGTGGGTTCATTTAATTTCAGTCTATGGAGGTATACAAAAAAGTCCTGCAGATTTTAGAATGCTTTGATTTTAAGCAGTTCATGGTTTTACTGTTCAAATGAATTTCTAAATatcataataaatatatgacaatgttctaatataatataaatataaatttgtttAACAATTTGTAATTAATAGAATAAACTGACATACCATGCTACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47266 lncRNA downstream 2503 7064525 ~ 7066706 (-) True G35094
TU47231 lncRNA downstream 28567 7036261 ~ 7040642 (-) True G35078
TU47229 lncRNA downstream 33391 7034730 ~ 7035818 (-) True G35077
TU47220 lncRNA downstream 107216 6961173 ~ 6961993 (-) True G35069
TU47100 lncRNA downstream 337710 6730942 ~ 6731499 (-) True G34998
TU47273 lncRNA upstream 1384 7077225 ~ 7077629 (-) True G35099
TU47316 lncRNA upstream 46642 7122483 ~ 7123019 (-) True G35135
TU47409 lncRNA upstream 327328 7403169 ~ 7404536 (-) True G35203
TU47408 lncRNA upstream 327841 7403682 ~ 7404536 (-) False G35203
TU47411 lncRNA upstream 327841 7403682 ~ 7404536 (-) False G35203
XM_007259330.3 mRNA downstream 48440 7002140 ~ 7020769 (-) False sec24c
XM_007259327.3 mRNA downstream 48440 7002140 ~ 7020769 (-) True sec24c
XM_007259331.3 mRNA downstream 48441 7002140 ~ 7020768 (-) False sec24c
XM_007259329.3 mRNA downstream 48441 7002140 ~ 7020768 (-) False sec24c
XM_022669024.1 mRNA downstream 76108 6886709 ~ 6993101 (-) True LOC103032713
XM_007259336.3 mRNA upstream 21201 7097042 ~ 7104020 (-) True chad
XM_007259338.2 mRNA upstream 37285 7113126 ~ 7115766 (-) False armc7
XM_007259339.2 mRNA upstream 37285 7113126 ~ 7115764 (-) True armc7
XM_007259363.3 mRNA upstream 96826 7172667 ~ 7229961 (-) True LOC103046826
XM_007259341.3 mRNA upstream 173124 7248965 ~ 7265703 (-) True LOC103039554
TU47076 other downstream 415624 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 527845 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 555508 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 1129809 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 1141055 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 1848987 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2128729 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2350234 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2350995 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2350995 9426836 ~ 9431228 (-) True rpl38

Expression Profile