RNA id: XM_007259337.3


Basic Information

Item Value
RNA id XM_007259337.3
length 3129
RNA type mRNA
GC content 0.43
exon number 16
gene id acsf2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7078789 ~ 7112191 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTTTAGTTAAGCTCAAACTTTAACTTTTCCAGGGTCCAATAAAGCAGTGAGTGGTGTGTGCAGATGAGGGCATGATTAGAGTGACTCAGAGATAAacccaggtgtgtgtgtgcgtgtgagacTTCTGTAGGCTCTGTATCTCCGCTGGATCACTGCAGAGGCTCACACTATCGAGGTGTGCCGAGTTTTGTtgcaacacaaaacaacaagcagcagcagcagctctagcCGTCCTGCAGTCTGAACGCCCGGGCTCTGAACACGCTTTAAAGCTGCAGAAATGTCTCCGAAGATTTTGGCAGCTGTCCGCACCGCTGTTCTGCTTTCTAAGCCTGGGAGAGGAGCGCACAGAGCATGGACACCTATTTTAGCTGCTCAACCCAACTGTGCCATCCATGTAGACGGTCCACCCAATGTACCGACTTTGACAACCAGCTATGCTCATGGTGTCTCCTCCGAGTCTCTGCAGTCTCTCACTGTGGGCAAGGCACTGCGTTTGACAACAGAGCGCTATCCGGACCGCGAGGCCGTAGTGTTCGTGCAGAGTGGCATCAGGAAGACCTTTGCTCAATTCCAAAATGACGTGGATCAGGCAGCGGCAGGTCTTGTGGCTTTGGGGCTGAAGAAAGGAGATCGGTTAGGAATGTGGGGACCCAACACATATGAATGGGTTGTGATACAGTATGCCACAGCCAAGGCTGGAATCATTATGGTGTCAGTGAATCCAGCTTATCAGTTACAGGAGCTGGAATATGCATTAAGAAAGGTGCAGTGCAAAGCAATTGTGTGTCCAACACAGTTTAAGACGCAGAAATACTGTGACATGTTGAGGCAACTCTGCCCTGGGATGGACACTGCTTCCCCTGGGGGGATAAAGAGTTCCAGATTGCCAGACTTGAGTACAGTGATTTTGACAGACAGTAAGCAGCCTGGGACCTTTAGCTGGACTGATCTGATGGAGGCGGGGAGCAGTGATCACTTCAACCAGCTGCAGGACATCCAGAAGACACTGTCCTTTGACGACCCCATTAACATCCAGTTCACATCGGGAACAACTGGTAGTCCAAAAGGAGCTGCCCTGTCCCACCACAACATTGTCAACAATGCCTACTTTATTGGCCTGCGTATGGGATATCAGTGGAGGAAAAATGTACGAGTTTGTGTGCCAGTGCCACTTTACCACTGTTTTGGCTCAGTGGGTGGAGGCATAGTAATGGGATTACATGGAATCACAATGGTCTTTCCCTCCTCTGGTTACGATGGGCGTGCCAACCTTGAAGCTATGCAGAATGAGAAGTGCACATTTGTCTATGGTACCCCGACCATGTACATAGATATGCTGGGTCAGCCCGACTTGGCCAAGTTTGACATATCGTCTGTTCAGACAGGAATTGTAGCTGGCTCTCCCTGCCCTCCTGAAGTAATGAGGAAAGTTATCAAAGTCATGGGCATAAAGGAACTTACAattggaTACGGCACCACTGAGAACAGTCCTGTGACTTTCTGTGGCTTCCCTGTTGACAACttggagagaaagacagagactgTTGGATGCATCGTCCCTCACACTGAGGCGAAGGTGGTCAACCCTACAACAGGATTTACTGTTCCTCTTGGAACTCAAGGAGAGCTGCTGATAAGAGGTTACTGCGTCATGCTGGAATACTGGCAAGATGAGGCTAAAACCAGAGAATGCTTCACTAAAGACCGCTGGTACAAAACTGGTGATATCGCCACTTTGGACGAGTTTGGTTACTGTAAAATTGTGGGCCGAATTAAAGACATGGTGATCCGTGGAGGAGAAAATATCTACCCTGCTGAAATTGAACAGTTCCTGCACACACATCCCAAAATCCAGGAAGCACAGGTGATTGGAGTGAAGGATGAAAGAATGGGTGAAGAGGTTTGTGCCTGCATCAAACTGAAGGCTGGGCAAGAATGTACTGCAGAGGAGATCAAGAACTACTGCAAAGGCCAGatttCCCATTACAAGATCCCTCGTTATATCACTTTTGTTGAGAGCTATCCTCTGACTGTCTCAGGAAagatccagaagcACAAACTGCGAGAGCAGACAGAGAAACAGCTGGGACTGTGAATGGAATACATGTCTGGTATTTCACttgtataaaaatacagaaataattgttgaatAAACTGTTGATGTTCTGCTTCATAATTCATGTATCTTAATTTCACTCTGTGTTATTCTTATtctaagtataaaagtacattattaaatgattttaaaaagtttaaagagcatcaaaataagattttttaattacattttagttaatctaaaaatgtttgtattttttgttcatAAGACAATTCAAAAAGCTAAACTgctatatattattttcattacacATAAGGTGATATATTTCAAgagggtgccagatggatgggacaaaCAAGTTCTGcatgcatttaacatttcttgatgCACAAGAACACACCTGGTACACACCTTGTCctgtgtgtaccaggaatacatcatagaacacattaccacccacagtggacaggcTAGAATTGAACATGCGGACAGATAAGCCACTTATTTGGCCTGTCAGTGAATAAAATATGACAGTTTAACTTTTTGAATTAAACTCTGAACACATTTTAAAGATGCTctaatgtactttttttatacCCTGTTGATGTCAACCTTGTGGATTTAATGCACATAATCAATGCAACATTTATCAGTGACAAGGAGTTTGCTTTCAACTGCTTGTGTTTttatatgataaatatataaaaatgtattgccttttttgccattttttaatccattacatgtataataaaatgtatacaaatataCACTCTTTTTATAGTAAGATCAAAAGACTACATTGTATTTATTGATGTGTGTAAGAAATGTCCGACAGTTCTGACTATCTGAAGGTAATGCTGTTTATCATCCATTCACACCTGTGTCACATCAGTTATGCTACATCTGATGTACATATGCTGGTGTGCTGCTGACATTTCTCTTATGTAACAAACAAAACCTCAAACCATGTGCCATGTTCCAACAATCAGTAGCCATGGACCTAAACAGCTGCCTAGACCTctgaacattaaaataaaagtgtatgtTTGTTAAAACGGCAAA

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47270 lncRNA upstream 1632 7076688 ~ 7077157 (+) True G35096
TU47147 lncRNA upstream 28160 6987832 ~ 7050629 (+) True G35031
TU47156 lncRNA upstream 57986 7017313 ~ 7020803 (+) True G35037
TU47150 lncRNA upstream 68872 7005776 ~ 7009917 (+) True G35034
TU47121 lncRNA upstream 136518 6809228 ~ 6942271 (+) True G35012
XR_002649863.1 lncRNA downstream 3664 7115855 ~ 7119167 (+) True LOC111192361
TU47275 lncRNA downstream 3888 7116079 ~ 7119127 (+) False LOC111192361
TU47276 lncRNA downstream 3934 7116125 ~ 7119127 (+) False LOC111192361
TU47277 lncRNA downstream 3934 7116125 ~ 7119127 (+) False LOC111192361
TU47278 lncRNA downstream 13763 7125954 ~ 7159316 (+) True G35102
XM_007259334.3 mRNA upstream 10261 7057908 ~ 7068528 (+) True LOC103036712
XM_015608397.2 mRNA upstream 22360 7043482 ~ 7056429 (+) True slc16a5
XM_007259332.3 mRNA upstream 22360 7043483 ~ 7056429 (+) False slc16a5
XM_007259333.3 mRNA upstream 38104 7029131 ~ 7040685 (+) True kctd2
XM_022669032.1 mRNA upstream 50630 7021996 ~ 7028159 (+) True LOC103033683
XM_022669035.1 mRNA downstream 163556 7275747 ~ 7292804 (+) True LOC103039861
XM_007259343.3 mRNA downstream 194115 7306306 ~ 7335081 (+) True LOC103040176
XM_007259344.3 mRNA downstream 194115 7306306 ~ 7335081 (+) False LOC103040176
XM_022669036.1 mRNA downstream 240895 7353086 ~ 7466457 (+) True ankfn1
XM_007259346.3 mRNA downstream 360716 7472907 ~ 7475245 (+) True nog
TU47135 other upstream 174792 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 347365 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 415202 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 417538 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 2900706 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 3361183 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 3361183 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 3882170 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 3882170 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 4689267 11801458 ~ 11802204 (+) True G35903

Expression Profile