RNA id: XM_007259341.3


Basic Information

Item Value
RNA id XM_007259341.3
length 2159
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC103039554
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 7248965 ~ 7265703 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGGGAGGCTGAAGCTATAGTGTAATCCAAGCAGATGATCTCAATGGACGagtgtgaggaggaggagagaaagggaaagagagaaaggaaggaaTAACTTGAGGATTTGAGAGCACACAGCAGTGACAGGAGTTTGTGTCGTGTCTTTTTTAGCTTTTCCTTTGGTGTGGAATATCCTTAGCTGGTTATTTTTAGATATTAATTAACTATAACATTGTAAACTATAACACTGTGGATGTATCTAGCTACGTCGTTCCTCGACAGCATCTATCTAGCTAAGATCTGACCAAATCTGAGTGTTTGAGTCTTTAATCTGAGTTGAAGCTGCTGGAATTGTCTTTTTCAGCACCATGTGTGGGAAATTAAGGCTGTAGTGCTGAATATGTTGCTTGTCAACGTTAGTTAAGGGTTTGGTATCTTGTAGTGGATAATTCTAGCTAGGTCTGATAGCTCTTTCAAACAGCACCAATAAAAGATGATCCATAATGGGACACCGGACTGACACATCCATGAAGATGAGCCACAGGAGCAGCCCCGCAAAAGCCTATGATTTCCTTCTGAAATTTCTGCTGGTGGGAGACAGTGATGTGGGCAAAGGGGAGATACTGGCCAGTCTGCAGGATGGATCTAGTGAATCTCCATATGGATATAACATGGGGATTGATTATAAAACTACCACTATCCTGCTTGATGGACGCCGAGTTAAGCTGCAGCTTTGGGACACCTCTGGACAGGGACGTTTCTGCACCATCTTCCGCTCTTACTCCAGAGGAGCACAGGGTGTTATCCTTGTATATGACATCACAAATCGCTGGTCCTTTGATGGAATTGACAGATGGATTAAAGAGATTGATGAGCATGCGCCAGGAGTGCCAAAGATCCTGGTGGGGAACCGTCTGCACTTGGCTTACAAGCGTCAGGTGACCACTGAAAATGCCCAGGCCTTCGCAGAGAGGCTAGGGGTTACCTTCTTTGAGGTCAGCCCTCTGTGCAACTTCAACATCACAGAGTCCTTCACTGAATTGGCACGCATTGTTTTAATGCGGCATGGCATGGAGAGACTGTGGAGACCCAACAAAGtgtTGAGTCTGCAGGACCTGTGCTGCCGATCCATTGTCTCCTGCACACCCGTGCACCTGGTAGACAAACTCCCACTTCCTGTTGCCTTAAAGAGCCACCTCAAGTCCTTCTCCATGGCCAACGGCCTAAACGCTCGCATGATGCACGGGCGCTCCTACTCCGTCATCGCCAGCAGCGCAAAGAAGAGGAACggaacaaaaaaatccaaactcaTCTACCCACCCCTGAGCCCGTCCCAGAGCTGCGCAAGAACCAGCTGCAAGATATCATAGTGTAATGACACGGTGTGCACTCGCAACGTATACACACAGCCACAGTTTACAACATGAGGCAATGCTCAAAGTCAACAGGGTTTTACTTAAGTGAAGACGTCTCCCAGTGACTCATGGCTACCAGTGCCCATGATCTTTCATTAAACCCAGATACTTGGGGCGCGTTCCCCGCACCAGATCTGAATGTGAATGCTCAAAGAGATTGAACAGACCCAGAAGAAGGGATGTTTCAGAGTGTAAAGCCATTATTTCACCCTATTTTGCATATATGTACAGAATATTCCATCCTGTTTGTAAATGACGAGTTGTAAAATGTAAAGGTACTGCATTTTGGACGTTGAAGACATGAAATATTTTACAGAGCTTGGACCAAGCAAGCATTAGGGCAGAGAAAACAGTCCTGTGTTTTTTGGGATAATTTTCTGAGTGGACCTAGTTGATAATACCAGCTTGTTTTCTTACTTTTATTCTAATGCTCTTCAGGGTACATGTATTGAACAAACGTCAGTGTTGAGAAATGCAGCTCTTTGTATTGTGTATTTAAGTCATGTTGTTtgatactatattattattattcttaattATTGTAATGCACTTGAACAGTGaacaatattgtaatattttgtatgaGTGACACCAAAGACATGGCAGATTGAATAAGAAACTTACCAACACTAATACGATTTGTTACGGATTCACTATGGGCACTAATATTTCAACTACACTACAGATCAACACTGATTCTTAACTAGATATCGGTTTTGTtcggtttcattttttttaataaaagtgtgtTACCAACAGGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47316 lncRNA downstream 125946 7122483 ~ 7123019 (-) True G35135
TU47273 lncRNA downstream 171336 7077225 ~ 7077629 (-) True G35099
TU47266 lncRNA downstream 182259 7064525 ~ 7066706 (-) True G35094
TU47231 lncRNA downstream 208323 7036261 ~ 7040642 (-) True G35078
TU47229 lncRNA downstream 213147 7034730 ~ 7035818 (-) True G35077
TU47409 lncRNA upstream 137466 7403169 ~ 7404536 (-) True G35203
TU47408 lncRNA upstream 137979 7403682 ~ 7404536 (-) False G35203
TU47411 lncRNA upstream 137979 7403682 ~ 7404536 (-) False G35203
TU47480 lncRNA upstream 783839 8049542 ~ 8051653 (-) True G35266
TU47535 lncRNA upstream 1029127 8294830 ~ 8360237 (-) False G35306
XM_007259363.3 mRNA downstream 19004 7172667 ~ 7229961 (-) True LOC103046826
XM_007259338.2 mRNA downstream 133199 7113126 ~ 7115766 (-) False armc7
XM_007259339.2 mRNA downstream 133201 7113126 ~ 7115764 (-) True armc7
XM_007259336.3 mRNA downstream 144945 7097042 ~ 7104020 (-) True chad
XM_022669034.1 mRNA downstream 173124 7069209 ~ 7075841 (-) False faap100
XM_007259340.3 mRNA upstream 2234 7267937 ~ 7271599 (-) True LOC103039244
XM_022669412.1 mRNA upstream 83043 7348746 ~ 7350459 (-) True LOC111192401
XM_022669046.1 mRNA upstream 1055546 8321249 ~ 8338621 (-) False LOC103037651
XM_022669045.1 mRNA upstream 1055546 8321249 ~ 8338619 (-) True LOC103037651
XM_022669044.1 mRNA upstream 1055546 8321249 ~ 8325028 (-) False LOC103037651
TU47076 other downstream 595380 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 707601 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 735264 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 1309565 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 1320811 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 1659125 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 1938867 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2160372 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2161133 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2161133 9426836 ~ 9431228 (-) True rpl38

Expression Profile