RNA id: XM_022669048.1


Basic Information

Item Value
RNA id XM_022669048.1
length 3694
RNA type mRNA
GC content 0.48
exon number 21
gene id ccdc57
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8361499 ~ 8401643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAACTATAGTAATTCTATCCTCCCTTGGGAAAGAAGCTGACTGGACTCTCCCATTCGGAGAATGAGCCTTTAAAGCCCTGTGATGCCCAACTCTGCCCTACCCTCCTTTGGCTCCACCTTTTCTTACCTGCTGCTAAAGTTATATCCAGAGACTGAGGCACAGccatttctcattttcttcaaataaatccTTTAAATGACATTGTGAAGGAGAAGCAGCAATTGTTCAGCATCTCCAtgaactattccagAGCTGATGTGCTGATACTCAGGCATTAAGCCCTAACTATGCAGGACTCGGGGGACCTTGAGGCTCAGCTGGCCTGTAAGGAGAGAGAGTGGAAAGAGCTGCAGGCCCTGCGCATCCAGCAGTTGGAGACTGCACTGGCCGAAGCCACTAGCCAACTTTTCAGCCAAAGAGAACGCTTCTCGCAACTCCGTGATGACTTCCAGTATAACCTGCGTGTGCTggaagagagggatagagagctGGAAGTCTATGATGCCATGGCTGTTCAAGTTCGCACTGAAGAGAGTGCTCGACAcgaggagctcagtgaacttaGGATACAGGTAGCAAGACTCCAGGAAACCataggagaggagaggagacagAATCAAGATCTGCAGGCACAGTATCAGAAGAGAGGTGTGGAGCACAGACTTCAACTGGAAAGAATACAGAGTGTAAAAGAGGACGAGATACAAAAACTCAGGGAGGAGAATGAGGCACTGAAACGGGATCTCCAGCGGCGAATACAGGAATCTGAAGGGGAGCTGGCACTGCAGAAACAGGAAATGATGGCAGACTTTGACAGTGAGATGAGAAAGCGGGAGCATGAGTTTAATTTGAGGCTGGACGAGATGCACAATGTTGTACTGTCCCATGAGCTTAAGGTGAAGCTCCTGAGCAAAGAACTGGAGGTCCATGCCCAAGCACACAGCCAGGCTACTGAAGCCCTTCAGATGTCTGAGGAGCTCTGTCAGCAAGCTCAGAAAGAAATCCTGAACAGAGACTGGGACCTCAAGAACACAGCTGCCGTCAAAAACTCTAGaataaaagagcTTGAGGAAAAGCTGAAGCAGATGGAAGCCAAGCAAAAAAGGGAAGCAGAAGTCAACAACAGGAAGCATGCAGAGCTGGAACGAAGAGCTAGGGAGAGAGAAGCTGCTCTGGGGGCCATGAAGGAGGCCCATTGCTGTGACCTGCgggaggagaagaaaaaggcCACAGTGTTACAGACCCGGCTGGAAAGACTGTACTTGGAGCAGGAGAGCCGAGAAAAGGGCCATGAAAACGACCTCCAACACAGAGATCAGCAGATACAAGAGCTCCGCACACAGCTGGAGAAGACGCAGGCTGGCTGGGATGCTTACATCACGCAGGTCTCCAAAGAGACGGTTGCCAAGGACACAGAGCTGCTGTCTGTGGGGGAGAGAGAGGCTAAAGTGAGAGCAGAGCTACAGAAGTGTAAAGAGGATGTGGAGAGATATAAGCAGCAGTTGGCCAGTGGCATTCAGAGAGAGCAAGCTCTGGAGAAGAAGCGTGTGCAGCTGGAGCTGGATTGGGAGCGGAGGTGTGAGGAAGTACGTGCTGAACACTACCTTAAGAGCGAGGAGCTTATCCAGGGTCTGACCCAGGCTAGAGATCAGGTAACCGCTGAACTGAGGGAGAAGGAGCGAGAGCTGCTAGAGACTGTGACTTTGCTGAAAAGTGTCACCATAGAGCGAGACAAGGCATTATCTATGGTCAAGATTTCTCCAAGCACAGTTTCTCAGGCGGCTGGAGAGGAGCGGAATTCTTTCCCCTCAGAGGAGATCCGACGattgcagcagcagaacagcagcCTGAGAGAGGTGATTGCTGAGATGAGAAGGCAAATGGAGACCCTTAGCAAAGAGGTTCCCCCAGCTCAGAATGTAACCCTAACCCAGCATCCTGACCCAGAACCCATCATCACAGGGACTACAGAATACAGTCAGGCCCTGGAGGAAGAATTACAAAACCTAAAGGCCAAATGCAGACGCCTTGAGGACCAATTAGATGAGGTTTCCAAGACAAATAATCCCATTCCTACTTCTGATCAACAGCTCcctgtttctcctgaaaatgCCTACCTTCAAAACCACATTAAGTCACTTAATGAGACCATAGGTGGTCTGCGAGTTGAAAAAGTAGCCAGTGctgctactttgaagaaacaGGAGGTCAGGCTTGCACATTTGGAGTCTATGGTGGTTAATCTCACACAACAGTGTCACTCAAGACAAATAGAGAATGAGGCTCTTCGTGTGGAACTGGCCAATCATAAGAGAGAATCGGCAGCCGAAAAAGCAAGTCTGAAACAAAAAATAGCTGCTGCTGACATGCAATTGGAGGAGGTGAAAAGAGAAGCAGAGGAATACCAAAAAGGCAGCCTTATTCATAATCTGGAAACAGTAGCCCTGGGCAAccagGTGTCTGCACTGAAACTGGACATTGCAAGCAGGAGGGAGCCCATTGTTTTGCAACAGAGTGAGATGGTAAAACAGCTTCAGGAGGAAAACCTCAGTCTGAGgcagcagctgctgctgttgcattGTTCTGGCAGAGGGGACGTTGCTGGCGATGCCAATCTGCTTCAGTCCAAACTCAAACAGGCAGCTCACTGGATCTCTCGTCTCAGCCAGGACAAACGGCAGCTCATTGAAATGGGCAACCGACTCCGGGCTCAGCTGGCCGAGGCAGGAGTAGCCACATCCAAGCCTATCCTTAGTCTTCAGGAAAAAGAATCCCAAAAAGCTGTGCCTGAAACCCAGACCCAGAGTCGCCTGTCTACCCTGGAACAACTTCAGTACAAGCTTACAACTCAGGAGCTCCAGTATGCACAGAGAGATCAGAGCAAGAAAAACCCTATTATTGTCCGCCCCCACTATTCTGGTAGTGAGAGTGGAGACAAAGGCAAAACCAGCAATCCATGGGACCCACCAACAAAACTCCAGCACTCATTTAGTAAAGAAAACACCCCCCCAGCACAACCTGAGGTTCCTGTGCACCTGGCCAGCTCTCCCCAGACCTTACTGTCATCCATGGGCACTGATGAGTCCCTGCAGGACGTGTGGCAGATACTTGAGCATGGATTGAGTCCCACAATGCTCACTCCTAGTGACAGTGACCACAAAGATGGGGTTTCTGCATCAGCCAGAGGTGAACAGGAAGCACACACAGGACTACCAGTTCAAATTCAGGGCTTAAACCCAGCAGtccaggaaagaaaaaaacaagtcagAACTGAATCTGCACCTGTTAAAAAGCTGAGGCCTGCTGGTAAGGTGGTCAAGATTCGCAATTACAATATTAAAGActgaaaataaagtagttatgaAATTTTATACCACCCTTTGAATTTAGATTTCAGGTACAATTTTCAGGCCCATGACTTTTTACAGaccatgttttaaccatgtCCTATTGTGCCACTTAAATTTGCCTTTGAAAAGTAAGGACTATTTTGTTAACTCAGGTTTTAAAAGGCAGAAGTAGCTTTTCCTCAGTTCCTTAAAAGGGAATGCTAAACACAGCAGTGTATACATTCCTCTTTCTCTCAAGAATGTGACTTAATGCTTAAAGAATGCACTGATAATAATTAGGAAAAACAATgtgactttttaatgatatgtttttattaaataaaacacttgtTTTGTACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47458 lncRNA upstream 270015 8108160 ~ 8108470 (+) True G35244
TU47334 lncRNA upstream 1055528 7321920 ~ 7322957 (+) True G35148
TU47325 lncRNA upstream 1144622 7233635 ~ 7233863 (+) True G35143
XR_002649864.1 lncRNA upstream 1147164 7230253 ~ 7231321 (+) True LOC103039044
TU47278 lncRNA upstream 1219169 7125954 ~ 7159316 (+) True G35102
TU47524 lncRNA downstream 5208 8406851 ~ 8407393 (+) True G35299
TU47525 lncRNA downstream 5837 8407480 ~ 8408610 (+) True G35300
TU47519 lncRNA downstream 65502 8467145 ~ 8472989 (+) False LOC103037241
XR_002649866.1 lncRNA downstream 72597 8474240 ~ 8491221 (+) True LOC111192363
XR_002649865.1 lncRNA downstream 77879 8479522 ~ 8491221 (+) False LOC111192363
XM_007259648.2 mRNA upstream 18232 8347603 ~ 8360253 (+) True LOC103030301
XM_022669040.1 mRNA upstream 96795 7583838 ~ 8281690 (+) False LOC103035888
XM_022669038.1 mRNA upstream 105272 7583836 ~ 8273213 (+) False LOC103035888
XM_022669052.1 mRNA downstream 3074 8404717 ~ 8438865 (+) True fasn
XM_022669053.1 mRNA downstream 40489 8442132 ~ 8472962 (+) True LOC103037241
XM_007259650.3 mRNA downstream 81228 8482871 ~ 8487451 (+) True LOC103030936
XM_022669058.1 mRNA downstream 197539 8599182 ~ 8703597 (+) True pald1
XM_022669059.1 mRNA downstream 210042 8611685 ~ 8703597 (+) False pald1
TU47135 other upstream 1474488 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1647061 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1714898 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1717234 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4200402 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 2071731 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 2071731 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2592718 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2592718 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3399815 11801458 ~ 11802204 (+) True G35903

Expression Profile