RNA id: XM_007260019.3


Basic Information

Item Value
RNA id XM_007260019.3
length 2387
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC103038526
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13352855 ~ 13359288 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTGAAGCTGATAAAGTCCCCGGGAGAAAACGCTCGAGCGAGTCTCCTACTCTTCACGCGCGACTGTTGTTTTTCTACACGATGTAAAACAGTAACTAGTTTTGGTAGCTTCTGAGCGAAATTCTGGGATTCTGCGTATCTAGCCGgatgtttatgtttgtttgagGTGGCTGATGTTATCTTCAGAGTTGGAGAAAATATGGAAGACCGAATGGACGAGCCAACCAAAGCTTCACAGCCAGCAGGAGGTGGACAATCTCATCAGCGACCAAATACCCATTCCAGGCCATTTTTCTACGTTCAACCACCTATGCAGCCTTTTTATACATACCAGTGGCACATGAACAACCCATACAGTCACAACATTCATGGATCAGGCTTTCATTTTGGTCGCCCCTGCATGATGCCTTATTCCTACCTGCAGTATCCTGGTTATGTTATGCCTCACGCTGCCGTGCACCCTGTAGATTATAGAAGAATTTATGAGCGCAGCTTTCCACCTGGCACATCAGCCGCTACTTACGACTTCAGCTTCCGCCAGCACCAGTCCAGTGGTGCCCAGAGAGAGACGACGTGTGCAGGGGCGCAGACCGACCCCTGTGAAGCACTGAATAAACTAATCGAGTGTCTGGATCAGCTCCGTGTCGGAGAGGCCGTGCACTCTGGAAAGAATTCCCAAACTTCTGGGACTGGGACCTTCTTGCCACAAGCTGATGAGGAAAAGAGTGGAGAAGAGAGTGGTGCAAGGAAATCTGTTAGTGGGTCCAAAACAGCAGAGCCAGAGTATAGTGGGGAAAGGTGTTGTACCCAGCTGGAGAACTGGTCGGTGAGTTCAGGAAAGGAACCGTCGCTAGATAGCTCCTCTGTGCAAGAGGAAGTCTGTGAGATACAAGAGGAAGATGACCACCTGCATCAAGATTTGTGTGTCCAGTCTCAAAAACATCCCAAGTGCACTGAAGAACCAAATAGTGGTCCAGAGAAAAGCCAAGATAGGAAAGTTTCAGACGTCAAAGCATGTGAACCCAGGGCACAACCAGAGTGGAAAGATCCTAATGCCAACTGGCCTTCATCACAATCCTCTCCAGTTCATCCTCCTTCTACCAGAACAACCGAATCTCAGGGTACCGAGAGTGCCCCAGCCGATATTTCAGGCAATTACTCCTGCTGTATCCTCCACCTGCCGTTTGAAAAAGTCCTGAATGCTAATGTTTATAGACCTGGCTCTACCACTCGATCACTTGGTTCCCCTTTTAGTTACAGCTACTACCCACCGCAGCTGTCCCACGAGCGTGTAAGTGTATTAAGCCCATCTCTGGATGAACTTTCTTCCCATGATGAGCTTCTGTCCACAGACCTGGAGGACATGGGCCTGTTTCCAACACAAATTTACACCAGAGGAAGACTGGCTGAGGTTGCATCAAGGAAAAGCACTCCGTGTGTTGGTGAGCTCCATACAGATATGTGTGTATTCTATCCAAAGAGGCTTACCTGTTCCGTTTGCGGCTCAAGTGCCCTCAAGGAGCACAGCAGGCCAAAAGCGTTCCGCTGTGAGACACACCATTATGGAGATGTCGATGACTCTGATGAGGAAGATCTAGAAGCTAACGTTGAAGACTGGGAAGCAATAAAAACTTGCAAGCATTGTCTTGGAGGCAACatgacaaaaatacacaccTCTAAGAAAAGTTACCCACTCTCCAAACACAGATTTAGGCACAGAGAGGAGCTCAAGGGGAAACCAGGCCAGACAGACACAACTTGTACTGAACATATGCACTGTTGTGAAAAATGGATTAGTCCTCCAGAGATGAGTACTGGTCATTCCACCAGAGGAATCAACACTCGACTTTGTAAAGAAAGACGATGCAGAACGATGGGAGTAATGCCTGATCAGGTTGTGTGGGAAAGTGCTGGAGGTAACGCCAGAACAAAGCCCTGCAGAGCTCAACCACTACCACAAAGGCAAGAAAGAATGAGCCAGAGGAAGTCTCGCCTTAAGCATCAGGAGTCCAGAAACGACAGTACTGCTgcagatgatggtgatgatgatgacgacgatgatgaagaggaggaggataaAGGTGAAGGGACTACGAAAAGAGGGGGTGTGAGATGCTAAAGTCCACAACGCACAGTGTCTGCAGTCAAAATCGTccaccacacaaaaaaaaaaacataagcactTGTTTTGTATTGATcattgaaaataattaaaaacaaaatcttttGAGTTTTTGAGTGACACAAACCTCAGTACACACCACTGCTTAATGTTTATAGCACAGGGTAAGTCACGGGCATGTTCTATCATTAGAAAAATTTAAAACGGTTCCCAACACTGGATGATTTTGAAGTTgttcattattaaaaatgttgcaATCCCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48669 lncRNA upstream 16421 13325935 ~ 13336434 (+) True G36155
TU48666 lncRNA upstream 27285 13323174 ~ 13325570 (+) True G36154
TU48658 lncRNA upstream 41247 13307093 ~ 13311608 (+) True G36146
TU48628 lncRNA upstream 74499 13216784 ~ 13278356 (+) True G36129
TU48604 lncRNA upstream 398144 12954411 ~ 12954711 (+) True G36106
TU48680 lncRNA downstream 33357 13392645 ~ 13394580 (+) True G36166
TU48694 lncRNA downstream 114866 13474154 ~ 13474794 (+) True G36177
TU48692 lncRNA downstream 115853 13475141 ~ 13477939 (+) True G36175
TU48695 lncRNA downstream 142958 13502246 ~ 13520560 (+) False LOC103039668
TU48783 lncRNA downstream 201840 13561128 ~ 13564733 (+) True G36244
XM_022669132.1 mRNA upstream 46997 13297548 ~ 13305858 (+) True psme2
XM_007248745.3 mRNA upstream 343182 12991143 ~ 13009673 (+) True pmp22
XM_007248744.2 mRNA upstream 376835 12964782 ~ 12976020 (+) True tekt3
XM_022669123.1 mRNA upstream 521537 12717653 ~ 12831318 (+) True LOC103024023
XM_022669136.1 mRNA downstream 63749 13423037 ~ 13459971 (+) True heatr1
XM_022669141.1 mRNA downstream 101363 13460651 ~ 13471964 (+) True arg1
XM_022669146.1 mRNA downstream 141759 13501047 ~ 13508892 (+) True nudt13
XM_022669147.1 mRNA downstream 141954 13501242 ~ 13508892 (+) False nudt13
XM_022669145.1 mRNA downstream 141955 13501243 ~ 13508892 (+) False nudt13
TU48468 other upstream 649799 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 786884 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 981893 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1550651 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 2351050 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 1103849 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1430092 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2073543 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 3641094 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 3641094 17000382 ~ 17018884 (+) False sun1

Expression Profile