RNA id: XM_007260021.3


Basic Information

Item Value
RNA id XM_007260021.3
length 1338
RNA type mRNA
GC content 0.49
exon number 6
gene id dnajc9
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13508956 ~ 13514238 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCGGACCTCAACCTGACCGGCCGAAGAAGAGCAGAAGGCGGCAAAGTGAGAGGAGAGAAACAGCGAGAAGAGGGGGATTAGAGGGAAGAGAGGAAAACAACGGAAAACAGGGGACTATTTTAATCCCGTATCCAGTGTACAGCggGAGTCATGGGTTTGCTGGAGCAGTGCGAGCAGCTGTTTGGTTCCTCCAGTCTGTATGAGGTGCTGGGGGTCCAGAAGGGGGCTTCAGACGCTGATATGCGGCGCGGCTACTACAAGCTCTCCCTGCAGGTTCACCCTGACCGAGCCCCCGGGGATGAGCAGGCCACCACCAAGTTCCAGATTCTCGGAAAGGTTTATGCTGTGTTAAGCGACAAGGAGCAAAGGGCTGTGTATGATGAACAGGGCATAGTGGATGAAGAATCAGACTCCATTGATCAGGACCGTGACTGGGAAGAACATTGGAGGAGGCTGTTTCCAAAGATCACCCTTCAGGACATCTTAAACTTTGAGAAGCAGTACAAGGGCTCAGATGAGGAAGTGCAGGACCTGAAGAGGCTCTACCTGCTTCATGAGGGAGACATGGACCACATCATGGACCACGCACTGTGCTGTGAGCACGGAGATGAGCCTCGCATCCGGGAGATCCTTCAGAATGCCATAGATGCTGAAGACATACCTGCTTACAAAGCTTTCACCCATGAGAGCACCAAGAAGAAGGCCAACCGCAAAAGGAAGGCCAAGAAGGAGCAGCAGGAGGCGGATGAGATGCGGAAAGAGATGGGACTGGATGCTGAGGACAGTCTAGTGGCCATGATCCAGCAAAGACAGAAGTCCAAGGAGAAAGGCTTCAACTCTCTCATCGCAGATCTTGAGGCCAAGTACTGCAAGAAGCCCGCTGGAGGGAAGAAAGGGTCCAAAAAAAAGTGAGAGCTCATTGTTCGTACCTGAACTGGAGAAACCTTTTGCATCTCCCAGGACTGGCAAAGAGCTGGCTGCTCAGTTGTGACTGAAGGAACCTGCAGTGCGTGACTCTGGGCTGTTATCCATTCACAGCACACCAGATGAgttatttattatacagctGATGTGCAGTTATGAACCCTAAATGTGTTTACAAGTTTTAGGTTCACACTTAAAGGCCCACTGTCTGCTGTTTCCATCCATAGAACTGGggtttgtttgattgattggGATTTCTTTTCCTGCTCTTATGTTTGGTTTATCATGTATAAACAAGTTGTATGTAGTTGATCTTAAGCTTTTGTGGCACTTTCACATGTGTGTCTGTTGCAGTGGAACACACATGCTCATTTAAACATGTTGGAAttgaataaactttttttttttccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48769 lncRNA downstream 4906 13501296 ~ 13504050 (-) True G36236
TU48757 lncRNA downstream 31199 13475166 ~ 13477757 (-) False p4ha1
TU48751 lncRNA downstream 58750 13446047 ~ 13450206 (-) True G36223
TU48709 lncRNA downstream 197601 13307102 ~ 13311355 (-) False lsm5
TU48613 lncRNA downstream 497944 13006516 ~ 13011012 (-) True G36114
TU48796 lncRNA upstream 44980 13559218 ~ 13573367 (-) True G36253
TU48800 lncRNA upstream 73548 13587786 ~ 13609936 (-) True G36257
TU48826 lncRNA upstream 164558 13678796 ~ 13758346 (-) True G36283
TU48850 lncRNA upstream 318685 13832923 ~ 13833170 (-) True G36300
TU48897 lncRNA upstream 322627 13836865 ~ 13841911 (-) True G36330
XM_022669143.1 mRNA downstream 8779 13477499 ~ 13500177 (-) True p4ha1
XM_022669142.1 mRNA downstream 8779 13477499 ~ 13500177 (-) False p4ha1
XM_022669140.1 mRNA downstream 88014 13391819 ~ 13420942 (-) False LOC103043889
XM_022669138.1 mRNA downstream 88015 13391819 ~ 13420941 (-) True LOC103043889
XM_022669139.1 mRNA downstream 88016 13391819 ~ 13420940 (-) False LOC103043889
XM_022669150.1 mRNA upstream 368219 13882457 ~ 14439229 (-) False grid1
XM_022669149.1 mRNA upstream 368219 13882457 ~ 14439229 (-) True grid1
XM_022669151.1 mRNA upstream 378669 13892907 ~ 14439229 (-) False grid1
XM_022669155.1 mRNA upstream 1051700 14565938 ~ 14616622 (-) False wapl
XM_022669152.1 mRNA upstream 1051700 14565938 ~ 14616622 (-) False wapl
trnam-cau_20 other downstream 308718 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 311181 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 797411 12709808 ~ 12711545 (-) True G36074
trnaq-uug other downstream 840169 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 841049 12667836 ~ 12667907 (-) True trnaq-cug_2
trnal-caa_1 other upstream 1437399 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 1437603 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 1437866 14952104 ~ 14952216 (-) True trnal-caa_3
trnal-caa_4 other upstream 1438070 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 1438274 14952512 ~ 14952624 (-) True trnal-caa_5

Expression Profile