RNA id: XM_007260025.3


Basic Information

Item Value
RNA id XM_007260025.3
length 8130
RNA type mRNA
GC content 0.49
exon number 11
gene id ccser2
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13525763 ~ 13630014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTATCAGCTGTGATTGGGTTTCAGCAGCAGCTGTGGTTTCGCTCTTCGGTATCAGCGCTGTTTATTGAGTATTTTTGCCAAATATTAGTCCGGCTTTAACGCGCCCTTTGCGGGTTAGGGTCAAGATCCGACGCTTTAACCGGAGGAGACCGAGCGGAGACCGGTAAAGGAACGGTGAGGGACTCGCCGGGTAGcggcgtgcgtgtgtgtggcaCCGCAGCCGGGTTCGGCCTCGCTGTCGGCGGCGTGAAGGAGCGGCTGCGCACGGTCTTCTGTTAGCTCCGGAGCTAAAACGGGTTAGCAGCGTCACCGTCCTCCACTGCAGCTCCGCCGGATTTTTTGGTTGAAGCGCCGCTGCGGTAGTTCTGATTGGATCATTTGATGGATTGATTTGAGCTTCTGTCCCTGCGCTCATACCCATGGTGGGGGAGGTAGCCGATGGAAGACACGGCCCTCAAGCAGCCCACCATGGTCTCCAGACTGCCCAAGTTTGGCTCCCGTGCTGCCCCGGCTTCTGCTGGCCCCCTCTCCAACGGTTCTGCCCTGCCTGTGTCCTCTGTAGGAGGTAAAGGGGTACCTGTTGGAAAGCAGAATGGGATAATTCGAGTTCCTCCTACACTTTCTACAAAGTGGAAGAAGGGGAGGGATGACAGTGGAGAGAAGATTCCAGATGCTGGTGAAGAGCCTCGCATGGGTGTCCGCACCCAACAGCAGCCACGCTCTGCGGCCATGATTAGAGATTTCGGAAAGCCCTCTGCTGCCCCAGTGGGTAAGGCCCGAAGGTCAATCCCCACGGCAACTAGCACAAATCCCAGAACTATCCCTCAGTCCACCAGGGCCAATCCACGCACTACTGCTCCCAAAAACCCTTCCCAGAATCAGTCGATGTACAGCCGCAGAGCTGGCATGAACGGCATCGGCTCAGGCCTTCCAAAACCCGGCTCCTCATCCTCCTTGTCACAGTCCAGCGACAGTCTAAAGTCTGTCTCTGTGGAACATGTTGTGCGATcacagagcttcagccagttaAAGAGCTCTACCACCCCTGCCAGTCCTCCACTGACCCGCTCTTTTTCCTTCAACCGAGCAGCAGAGTTGGCAAAGGAGATGCCCAGACCGCTTGCACAGTCCCCCCTAGCCAGGTCTCCAGTCACTCAGCCCTCTCTTGTGTTGGCTGGAGAGAGACCAGGTCCTTTTGGTGTAGCAAAATCAACTATCTCAACCAACACTAGCAGTTCATTACCACCCGCATCCCTGAAGAAATCACTCTTGCCCAACTGCTCTAGCAGCAAGCCATCAGCGATTAGCTACAAGCTAATGCGACCGTCGCTTATCAAGCAGCCCCGCTCAGCACTGTCAGGGAAAGTCCAAGTAAAAGCTGGGTCAATGCAGAGAGATGCAGAATCGCAAGAAACAGTCCCAACGACATCTGACATCTCCAGTAACACTGAAAGTGCTGAAACTACCCCAGATGACCCCAAGGAATCCGATGGCCTCCAGGTTGTCTCCCTTGAGATCCCAGAGGACATGTCCATGTCCTCCACGTCCTCTTTGGAGCGCAATGATATTAGCGAAGAGTACATGGACGACTTTGATGATCTGGGCAGTGGGGTCAGGATCCAACTGTACCAACCTATTCATGACATAGGGAATGGCCAGTCTGGATTTGAAGGCAACGCTCTGGTCAGTCAGTGTCAAGAAGGGTCGTCGGTAACCAGCCTCCACAGCTTCCTGTCCGAGACTGTAGACTGGGCTGAGATGGGTCTCACAGGGGCCCGGGAAGGACTTGATGTCTCGCCTCGAAAGATGTCTTCTGGGGGAGATCTGCCACACGGCTCCTCGCTGGACCTCTCCCCCTCGGACAGCTCCGGTGGGACCTATATGTGGGACGAAGAGGTTCTGGAGCCACTGGGAGGAGCCACGCATCGCTGTGGGAGCTACGACTCTGAACTCAACAGCATGGACATTCTCAACAACCTGGAGAACTTGGAATCATGTGATCTGGAAGACGATGACCTCATGCTGGACGTGGACCTGCCCGAAGACGCGTCCCTCCACAATGATGTTGATGGAGTGTCCCATTATGACTGTTCAGAGAGTGGTTTCTGGCCGGGGCAGTGGAGGAGACGACAGCAACTCTGGGGTAGATCAGAACAgcttaacaacaacaacagAGCTGCTGTTCTGCCGTCGTTTGACGACTGTCACCTGAAGGGCCTGGGGAGGCGAGGGTCAGGACACGGTTCTTTGGATGAGCTGATGCTGAAGCACATGGCCCAGGACTGCTCATCCGTCAAGGAACAGCTGCTACAGCTGAGGAGACTGCTGCAGATTGAAGAGGATGGATCAGTTGACGAGTCCTTGGAGTTGGACTCAAGTCTGTCTTCGGAAGAAACAAACTGCCAACAACAGGTGGAGGAGCTCCTGAAGGAGGTGCAGAACCTTAGAGAAGAACTAAGGGAGAAGGAGAGGCTAATTAGTAAGCTCAGTCAGCAGATGGCTGCCCAGCTGGAGGTGCCGCAGTGCCACTGCCTGCAGGGGGAGCCACTGAGCCAAGGGCAGCAGGACAAGAGCACTCAGACCCCTTGGAGAGTGCAGAATCCTCAGATACTACAGCCTTCCCGACCCTTGTCCAGGTCCAGCGGACACCACAAACTGGAAAGACCATCAAGCAAAGTCCTCACAGGGGCCCACAGTGACAGTGTGGATGCCAAGTCTGGTGACTGTCCAGTAAAGGTCCAGCCTTGTGCTTCAACCTCACGAGATTCTACCACGAGTAACATCATCCTTTCTCCTCTTCCTGAGCCTGCAACTGCACCTGCTTCTGCTGCTACTGTTAGTCCTACTGTTCCTGCCACGTCTTCTGTCACTCTGCAGGACATTGGACCTGACGAGCTTCACCAGCTTCTAGACACCCATCTCACAATCAGTGACTTGCACAGCCCCAGGGTCCGTACTAGCAATGTGCTCCTCAGAATAGGTGACCCACTTAGCCCTGGGGTTCAAGTTAACAACTGTGTTCAGCTGCTAAGGGGAGACTGTGCACCTAATGACCTTCACAGTCTGCAACCACTTAGCTACATCAAAAGAGCTACTGCTCTGATGAGGCATCGGGATAGTTCCCAGATAAACCTTGGTAGAGGTTTTCTGGGCAGGGCAGGGCGCCAGCAAGCCTGTTCCTCCAATACATCCAGGACCAGGCATATGCCTCCACCATCCCGTGGCTTCCCATGCATCAGCTCAGCCTCGCAGGTTGCTGCCTCCACAAATTTCTCAGCACACAATGTCCACTTTCGGGGCCTCAGACCAAACCAAGCTCCTAGAGACATGGAGCAAAGCTCAGCACGTGCCCGTGAGCTCCCCCAGCCCTGCAACTCACGCCTCCCCAAGCCAAAGAGCCACTGACACTTCCTGACACTTGGAAAGAGGCCAGCCAGTAAcgtcccctcccctcccctcctctTCTCTTCCCTCCTTTACCCTCCACAGCTCTGCTCAGGGCCTCCCACCAGACTTCATGCCTTCCCCCTGGCAAGGTCGTCACATAAGCTCCGTAAGCTCCAAAAGACTGCTCCGCTGAggtcttatttattttgccGAACATATCGAGGAGCGTTGCTGTGTTTGATCTTCCCGAGCTCTCCAAATAAGATGTGCACTCAAGGTTGCTCATCAGGTTGCCTGTGTTATTCAGCGCATCAGGAGCTTCTCATATGCGGTTTAAAAACTCCACTGCAAATCCAATCATTCAGTGTATTCTTCTGCTGTTCAACTTTCCCACTGTCTGTGCCAGGTGATAGCTATATATGTTTTCCAAAGCcttgaaaaagaaataaaaaaacactatttataaatgtaatatattttaaacgaATATAAGGCGATTGACAATAATTCCTTTGTTGCCTTTAACTCTTGACtagctaaaaaactaaaaagaacaGCTGAAATATGAGTTTCATTCTGactggggaaaaaagagaaaagaaaaaaagagaggaatatAATACGACTAATAACCACTTGATATTTTCTATATACTCATATAACAAAATAAGCTATGTTCAGTGTCATTAGAAATGTGCTGATCGATTGAAATGTCAGTAGTTTTGAGTcaccttattatttatttttttgaccaCTGTAATGAACCTGTTAtgctacactacattacacaacAAAATGTTccttttcattattaaacatttgcaGAATGCCTAGGTACATTTAGTAGATTGATCCATTTTGTTGGTGAATTTCTGTCAGTGATGGTTGGATGCTGTCTGATGCTGTCGTCTGTTGAGCACGTGACCCTTGTCTATGTTTTTAAGGAGCTTTAGTAAGGTCGGGTCCATTCTGTTGGCTTTACAGGAATTGATCGTTCACAGTTGCCCTTTAAAAGAGCAATGTGTGACTTGTAGCCTTTTGATTGCATCAGATATCTGTCCCTTTGTCATGAGCAACAGAGTGAGGAGTACCATCAGCTGCAGCAGACTGACTGACTGCTTTTCTGATGAAACACTACAGAGtgcttttcttgttctttttctctgcCATCCTTTCTCTCCTGCCTTTTGTCTCCTCGCGTTTGCTTGCGGAGTTCTTCACATCACTGTTCAGTGAGAGTAGTACGTGGGTGTGTGACTCTTTTGTGCTCCTCCCAGCCCTGCTGTCTGCACTCAGTGTATACCCACGACCAGAACTTTCTGAGGAACCGTATTGTGCAATCGTTCGCCCCCGCCTCCCGTTCCCGATCCCCCCCTCTTTCCACCGCTCTTCTTCCCCAGCTCTCCTTCAGCAGTGTGGAAGCTTGTGGCCTGCGGGCAGAGCCCACCCACCCAGCGCGGTAATGAGCAGGAGTGCTGGGAGCCCAGGCGAACCCGGCAGCGCAGAGTCTCCCCAGCCTTCAGCAGAAGCGGCTCAGAACACAGAAGCGAGATGAAGAGAAATAGAAGCGCAGGATCGACGCCGCCGGCGTGGAGAGCTCTGGCCATGCAGTGGGATGCTCAGGACCTGTTGGCATGGTTACTGGGATGAGCTACGCAGCGGTAGTGGGCTGCTGCCCATTGGCTGGCTCTTTGTGGGTCCAATTGCTATCTTGTCCCTCAtaattttacttcattacaaCAAAGCAGCAACATAAGTGCAATTCATGATAGCGCAATTGTAAAACAGAATGGCACACTGCGTTTTTATCTCAAAGCCATACTCTGAACCTCCTCTGATTCAGCTAAGTCAGTGGAAGGTTCATGTATATTGTCgaatatacagtgtttttaagaGGCTTAGTCTTTAGTACATGCACTGTAATACTCTGTCTTCAAATAGAGAACGTCCCGCATGCACTCGCAATACGCAATAAGCAAAGTGATGATACCTGCCTGTAGCTTATCTGTGTTACTATGCAAGAAATGCCCCAAGTATAAGATCAGACAAAGCTGTCCTAAATCAGCCTTGGGAAAATGACAGAAAACGACGGCTGCATAGCTTACATCTATGACGTAACCACTACGTGAAAGCTTCCTagtgtttttaaagcttttcagaTGTCTCATGTTATGTCATTTTGTTTCATATCAGCTTGCATGTCATGATGCACAATCTGACCTTCTGTTATGCTGTCTTTGGCCTGTGGTTTAAGAAGATTTCTTCTTCCTGCAGAGAAACCTTCCTTTATTGTCATCCTAAACCCCTTCTGCAAGTCCCACTCACTGTCTTCCAGTTGCTCAGCCAAGACCTCAATTCCTCTTTTCAGTCGCAGTCTTTTTTTGCAGCAAGACCTAGAGTTACCCAGTAACTACAACCATTGCTTTATCTGTACTCGGCCTCCAGTCCTCACCCATTTGTCTCATTACGTGAACGAGACCGACAGCTCAGCTCTCTCGTATGGCAAGTCAAATCTGTTCACCTGGgcacattcaagcagttcacccACCTGAGCTTCCCTCACTCTGTCGTGGATGTCTCTCTGCATAAGCCTTCACTGGTGACATACAGCTTGAATCGTCCTTGAAGCGCTTCTCCTCGGATGTTGCTGTCTGTTGGTAGGCAACTTGAAGACAGAGGCTTGGAAATGAGGAGCATCTCCAGGAAGTCTCTCTCCACGTGCACCAGCGGCCCGCAGATTAAACAAGATGCCCTCCCTGTAATCCCCAAATCCCACTTTAAGTGCACTTGACTTCCAAAGCAGCCCCTTCCTTCTACTACCTCTGCCTACCTTGTGCGCACACTAATGGAATCCCACTCTGGAAAGAAAAGAGAGTGCACACCTGAGCCCCCCCCAGACATGGCCTCTCGTAAGTACCTAAGATGATGGAGTGGCCTAAAGAGGATCTGTGTGTGGATAGTTCTTGAAGTGGTAGTGTTGATGGTGTTCCTGTTAACTGCAATTGACGAGAGTGGGACAATGGAGCGTGAGAGTACCACTCGGTTGTCGGTGAGGACCCAGAGTAAACATACACATTTGCACTGTTTCTATTTTCAAGGGGTGAAAGGAAGGGTGCTTGAAGAACCTGAAGATGCAAGGCACCGCTGAGAGGGACTGAAGCTTCCTTGACTTTGAATAGTTTGAAAGAGGAAAAGTTGCTCCTTTTCGTAGAGTTGGctcagatttgttttatttaatgaatgttttatgcgtttttttttttttttcgttttttttttacagacattatTTATTGGAGTCTAATACTGTTGCGTCTTTACCTGGTTTATCGTTTGGAAGAAAAACTAGCTTTAACTTTCCATAGCATAGTGGAGGATGCGATTCTTTCAACTCTTGTCTAGATGTGTCCTATAGCACAAGTGCCTTGTAATTTAGGATTTAGGCTTTAGGATTTCGCATTGAATTCACAGAGCACTTGGCTTGATACCATCAGGAAAAgggtgttttgtgtttaaagtTTGAGCTCTGCTACGTTGATGCAGCTGGCATTAGCTTTTGCTTTCACATTAGAGCTGCTGCTGGGCTGCATTGCTTTCCTTCACGAAACTTAGCTAAAGATGTGACCTGTGATGGTATACAACTGtcttcatgtatttattaacCACAGAACCACATGTGTATTACAGTTCCTTTGATTCCTGGTATattctggtcttttttttttgttcctactTAACACCTACTGTTAATAACTCAACTGTAATATGAATATAATCTTCTGCTCGGTCTTAACTCGCTGGCGTGACACTACACGTTCAACACTAGGTAATGCATATGTTTGCGTATGTGCTTCATGTCCAGCTCTGTACCACTTGAACAACACTCGAAGTCCGTCCTGTAAGGTGTGACAGTTATTTACGCTAACCGCGAGTCGTCTCAAATTGGCGCCACTTTCAGAAACCTAGTCCAGTTCCCAGTTCTAGAAGTGTCCCTGCATGTCTCATCACGCACTATGGAAATATAAGTTCTGTAAGTGTCtggcagtattattattatctgttgTTCAAACCTCGGCACGGTAGTCCCACTCTTATGGGAGGGATGTTATGTGGCGGGTCTTCTTTGGCTAAAGCAACATGGTGTTTCAACCATCTTCAACTGTGGCCAGAATAGGTTTCTGCCAGCTTCAAGAGGTTCTTCACACCATGGTACTTCAGGGAAAGAAGCCCTGGGCTGCTGCATGCCTCCATTTCTGCAGATCTTCTTCAAAAACATTGTATGCGAACCAACTGCAGTTTCTACACCCCTGTATGCTTTTTTTACTGGCGATTGCCAGTAGTCGTCGGTTATCTAAAAAGCCCAGCAGTCAGTGTTACATCACTGCCTCTCCTTAGCAATCCagcttattaatttatttttttgctccaTCGTGACTTGACAGCTGTTCCATTGTTCTGTAcatcttgtatttttaatttgtgcaATAAGAACACAGCGAAGAGCTCGAGCGGATATGCACTGTTGTTCGACGTGTAATTCTGACTAATTTATTTGAACGTTAATTACAAGAAGTGTTGTCACCAAATACTGACTAAGAATAAAAGAGGAAGAATGTCTTCAGCCAGACACACTCttgagactgaaaaaaaaagagaaagtgatgTTTTTGTCTCTGTCCTCATCTCTTTGCTTTGAGGCGGTGTGTCTGAGAGCTTGAAATAAAGACGGCACCAAAACCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48695 lncRNA upstream 5203 13502246 ~ 13520560 (+) False LOC103039668
TU48692 lncRNA upstream 47824 13475141 ~ 13477939 (+) True G36175
TU48694 lncRNA upstream 50969 13474154 ~ 13474794 (+) True G36177
TU48680 lncRNA upstream 131183 13392645 ~ 13394580 (+) True G36166
TU48669 lncRNA upstream 189329 13325935 ~ 13336434 (+) True G36155
TU48816 lncRNA downstream 32416 13662430 ~ 13662847 (+) True G36273
TU48819 lncRNA downstream 46799 13676813 ~ 13677131 (+) True G36276
TU48847 lncRNA downstream 179728 13809742 ~ 13810238 (+) True G36298
TU48848 lncRNA downstream 179728 13809742 ~ 13810182 (+) False G36298
TU48845 lncRNA downstream 179795 13809809 ~ 13810182 (+) False G36298
XM_007260023.3 mRNA upstream 5061 13514311 ~ 13520702 (+) True LOC103039668
XM_022669147.1 mRNA upstream 16871 13501242 ~ 13508892 (+) False nudt13
XM_022669156.1 mRNA downstream 934911 14564925 ~ 14567161 (+) True LOC107197918
XM_022669434.1 mRNA downstream 993215 14623229 ~ 14645576 (+) True btbd16
XM_022669164.1 mRNA downstream 1021636 14651650 ~ 14701359 (+) False LOC103046321
XM_022669159.1 mRNA downstream 1021637 14651651 ~ 14702499 (+) True LOC103046321
XM_022669161.1 mRNA downstream 1021637 14651651 ~ 14702499 (+) False LOC103046321
TU48468 other upstream 822707 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 959792 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 1154801 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1723559 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 2523958 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 833123 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1159366 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 1802817 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 3370368 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 3370368 17000382 ~ 17018884 (+) False sun1

Expression Profile