RNA id: XM_007260032.3


Basic Information

Item Value
RNA id XM_007260032.3
length 1886
RNA type mRNA
GC content 0.48
exon number 9
gene id get4
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14823653 ~ 14834347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGGGGTCAGTGCTGGTGTAGCGGTCGCGCGTTTTGCGGGGAGGATGATGTCGGAGCAGGACAGCGCGAAGGGCCGAAATCGCGGCGGAGTGCAGCGGGTGGAGGGCAAGCTCCGGGCCAGCGTAGAGCGGGGAGACTATTATGAAGCCCACCAGATGTACCGCACCTTGTTCTTCAGGTACATGGCCCAGGCGAAGCATGCAGAGGCCCGAGAGCTGATGTACAACGGAGCCCTGTTGTTCTTCAGCTACAACCAGCAAAACAGTGCAGCTGATCTGTCCATGCTGGTGCTAGAGACATTAGAGAAATCTGAGGCCAAAGTAGAAGAAGACATATTAGAGCATTTGGTTAAACTCTTTAGCTTAATGGATCCAAATTCACCTGAGAGGGTGGCATTCGTGTCCAGGGCACTAAAGTGGTCCACAGGGGGCTCGGGCAAGCTGGGCCACCCCAAACTACACCAGCTGCTTGCAGTCACACTCTGGAAAGAACAAAACTACAGTGAGTCACGCTACCACTTTCTGCATTCCTCCGATGGTGAGGGCTGTGCACAGATGCTGGTGGAATATTCGGCCGCCAGGGGCTTCCGCAGCGAGGTGGATATGTTTGTTGCTCAGGCAGTCTTACAGTTCCTCTGCCTAAAGAACAAAACTAGTGCATCAGTGGTCTtcaccacatacacacagaagCACCCATCCATAGAGAAAGGTCCTCCTTTTGTGCAGCCTCTTCTCAACTTCCTCTGGTTCCTCCTCTTAGCAGTGGACGGTGGGAAGCTGACAGTCTTCACAGTGTTATGTGAACAGTATCAACCGTCACTGAAGAGGGACCCCATGTATAATGAGTATCTGGACAGAATAGGACAGCTGTTCTTCGGCATACCACCAAAACAGTCATCGTCATACGGTGGACTACTAGGTAATCTCTTGAACAGTCTAATGGGTTCAGGTGAAgaagaggagggagaggaggcTCAGGAGAACAGCAGCCCCATTGAGCTGGACTGAAAATTGTCCCTCTACAACTGGAGGCGATGTCGTCCTTTTCAAAACTAGCCTCCTGACTTCTCCACcatcccaaaaaaataaaaaaggcaccAAATCAGATTATTCCCTTCTCCACCATCACTGAGAAACCAACAACCCAACCCAAAACTGAAACTCGCTCTCAGCGCATTCAGGACTGACTCAGAACAGAAACTTTCTCCTTCTTCAGCCAGATTGGGGAGGCGTCCTGCAGCTTGAGTGGCTGCGTTTTACGGGATCTTCtccctatttttctttttttgtttttttgctctctTCTTTCGTAGTTTTAAGAAGAGGGTGCCAGTGTGTTGACCATAATGGACTTGTTTTTTTCCCGTGTCAAAAAAAATGAGGGGAAAACAGAACCCAAATACATTTCCATTAACTCACTgaattctgggaaatgtagtccGTTATTTAAGATGGCCGAACCCAGACTCCTGCTCATTTCCAGCCACGACGAGTGAAAGtagttaattaattatgttGCTTATGGAAGTAACAGAATTACTTTTAAACCATTCTAATGTACTTTGATAAGTCTCAGTATGCTACACCAGAGGTGGTGAGCAGCTCCACCGTGTCTCGTCTTACAGGAGAGGTGTTTGCTGTATTTTTATGTTCTGGACTGACTTCACCGCCACTACTCCCGTTATTactgtgtgcgtgcgtgcacGTGTGCATGCATGCGTgcgtgagagagtgtgtatgtgtgtgtgtgcatatatgttGGAGTCGGATGTCAAGACTTTAGCTTGCTGTCCGTAGTATGCTGCTCACCTTTGCAGTCTGAAGCAggtgtttgttcttttttttttcgtctttgCTGAACATTGGAAGaggtcaataataataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49043 lncRNA upstream 29317 14793471 ~ 14794336 (+) True G36442
TU49037 lncRNA upstream 36352 14786050 ~ 14787301 (+) True G36437
TU48971 lncRNA upstream 205019 14616850 ~ 14618634 (+) True LOC111192375
TU49115 lncRNA downstream 203431 15037778 ~ 15037977 (+) True G36499
TU49121 lncRNA downstream 218695 15053042 ~ 15064113 (+) True G36503
TU49130 lncRNA downstream 243437 15077784 ~ 15081345 (+) True G36510
TU49129 lncRNA downstream 244779 15079126 ~ 15081345 (+) False G36510
TU49131 lncRNA downstream 247217 15081564 ~ 15083940 (+) True G36511
XM_007260031.3 mRNA upstream 1490 14798910 ~ 14822163 (+) True LOC103041718
XM_022669165.1 mRNA upstream 48456 14720879 ~ 14775197 (+) True LOC103041103
XM_022669158.1 mRNA upstream 121154 14651654 ~ 14702499 (+) False LOC103046321
XM_022669157.1 mRNA upstream 121154 14651655 ~ 14702499 (+) False LOC103046321
XM_022669162.1 mRNA upstream 122294 14651651 ~ 14701359 (+) False LOC103046321
XM_007255160.3 mRNA downstream 133533 14967880 ~ 14991299 (+) False LOC103032486
XM_007255161.3 mRNA downstream 133779 14968126 ~ 14991299 (+) True LOC103032486
XM_007255159.3 mRNA downstream 198042 15032389 ~ 15035954 (+) True LOC103032173
XM_007255156.3 mRNA downstream 282477 15116824 ~ 15133253 (+) True top2a
XM_007255166.2 mRNA downstream 299955 15134302 ~ 15135903 (+) True gjd3
TU49039 other upstream 32820 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 360014 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2120597 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2257682 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2452691 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 598484 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 2166035 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2166035 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 2168093 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 2367150 17201497 ~ 17205033 (+) True phf5a

Expression Profile