RNA id: XM_015601491.2


Basic Information

Item Value
RNA id XM_015601491.2
length 2719
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC103021762
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21987804 ~ 22011805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAACTGTGCTTGTTAAAGCCACCTTTGTCCCTGAGGAGCTTTAGAGCTTTACTGTATCAGAATCAGAGGTATCGATCCGCTCACGGAGGCTGCTTCCTGAGTtaCAAAAGAATGGCTCGTAAGGCTGTCTGCTGTGGCCTCAGCAGTCTGGAGCTGATGCTCATTGTTCTGTTCCTGCTGATGACTGGAATCACTATCGGACTGATCACTGTGTTAGCCATCAACCTCAACTCCCAAACACCGGAGCCGGAGGAACCGACTCCATCAGTACCGCCTCCAGAGAACCCCTACCTGATCGGGGTGGGCAGAGCAGACTGCACTGGACCAGTTGCGGATGTCCCCCTGATGGGCTATGCCAACCCGGATCAGACTGCAGGTGGGATCCACACTCGTCTGTTCAGCAGGGCCTTCATTGTGGACGATGGAAGCAAGAGGGTGGTGTTCGTGAACGCAGATATTGGCATGGTCTCTCAAAGACTGAGACTAGAGGTGCTGAAAGAGCTGGAGCTGAAGTACGGAGATCTCTACAGGCAGGAAAACGTAATTCTgagtggaacacacacacactccggcCTGGCGGGCTATTTCCAGTACACACTCTTTATCATCACCAGTAAAGGTTATATCAAGTCATCCATCCAACCCATTGTCAACGGAATTGTGAAGAGCATTGATGTGGCCCATAAGAATATGAGACCTGGGAGAATATTTGTGAGCAAAGGAGAAATTGTGGGCAGTAATCTCAACAGGAGTCCACACTCATACCTGAACAACCCTGAGGAGGAAAGAAACAGATATAAGTCCAATACAGATGAGCAGATTGTGACTCTAAAGTTTACAGATTTGGATGGAGATGGAATGGGGGTTTTCAgctggttTGCTGTTCATCCAGTAAGTATGAATTACACCAATCGCATGGTGAGCTCGGATAACCTCGGCTACGCCTCCTATCTGTTCGAGCAGGAGAAAAACATTGGCTACTTACCCGGTGAGGGTCCATTTGTAGCAGCGTTTGCAACTGCCAACAGCGGGGATGTGACTCCTAACACTCGTGGTCCGTACTGTATAAACACAGGAGAGAGATGTGATTACCTCAACAGCTCCTGTCCCATCGGTGGGACTAGAATGTGTGTTGCCTTTGGGCCGGGGAACGACATCTTTGACAGCACCAGGATTATAGGAGAGAATATCTACAGAAAGGCGAAGGAGCTTTATGGCAGTGCTAAACAGGAGCTGCGGGGGAGTGTCCATGCTGCTCATCAGTGGGTCAACATGACAGACGTCACTGTTCAACTTGACTCCACCCACAGTGTTAAGACCTGTAAACCTGCACTCGGGCACAGCTTTGCTGCAGGAACAATAGACGGAGGAGGAGATCTGAACTTCACACAAGGGGCAGTTGAAGGAGATCCGTTCTGGGATGGTATTAGGGACGCTCTCTTAGGTGCACCATCCAAAGAGATTCAAGAATGTCACAACCCCAAACCTATTCTCTTCAGCACTGGAGAGATGAACTGGCCGTTTCCGTGGCATCCAGACATTGTAGATGTTCAGATTATCACCATTGGTTCGGTGGCCATAGTGGCTGTTCCAGGAGAGGCAACAACAATGTCAGGAAGAAGGATCAGAGAAGGCGTTAAACAGGAGCTGGAGAAGAATGCTGCGTTCACCAATTCAGAAGTTGTCATTACTGGCCTTTGCAacatctacacacactacaTCACTACTTATGAAGAGTatcagGTGCAGCGATATGAAGGTGCTTCCACTATTTATGGTCCTCACACTCTCTCAGCCTACATCCAGCACTTCAGAGGCCTGGCCAGAGCCATAGCAGAGGGTAAAGTGGGGGAGCTGCCAAAGGGTCCTGAACCTCCGTTCTTCAGCAATCTCTTCTCTCTACTGGGGGAGCCGCCTGTGGATAGAAGCCCAGAAAACACCACATTTGGAGACGTCCTGCAGCAGGTTCACCCTGTGTATAAAGTGGGAGAGGTTGCTTCTGTGACTTTTGTAGCTGGGAACCCCAGAAACTCCGGGGAAATGAGAGACAAGACCTTCGTCACAGTGGAGAAGTTTCACAACAGCACCAGCACATGGGAGGTTGTTCATACAGATGCATCATGGGAGACCAGGTTTTACTGGATTAAGGGGACTGGTAATCAGAGTAATGCCACTGTGGAGTGGCACATCCCTCTCTCAGCAGAGTCCGGCACCTACAGGATCCGACACTTCGGCCACTACAAACAGCGCGTGATATTTCCTGTGATCACTGCATACGAGGGATCTTCACACACGTTCAGAGTCACCAAAACACTCTATTCTCTATAAATGTATTCCTGTATAGTACATAAGGAGCGCAATGTTTAGTAAAATGTAATGTCTGTCCTAAAGTATGTTTTACTGCTGCAAATTAGGCAATGTTTAGTAATCCTAATGCAGTTATTACACAAATATTTTGCGTCAATACTACTCATATAACTTGTATTATATTTACTAACttaatgaatttttattttcagtgtacACAGGTACACAGCAGGTTTATTGCCTGCTTTCTATGttataggctgtaagagcaagtatAGTTTTCTGAGCTggtaactctgtgttggctaTATGTAATGCTGTTCATAACACATATGCTTtcttaattacatatttttttttaatgtgtattttacttaaattaaataataaaaataaagagtaaataaata

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K12349 ASAH2; neutral ceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51686 lncRNA upstream 50731 21909061 ~ 21937073 (+) True G38324
TU51673 lncRNA upstream 104898 21881436 ~ 21882906 (+) True G38314
TU51668 lncRNA upstream 116268 21870422 ~ 21871536 (+) True G38310
TU51658 lncRNA upstream 146526 21828150 ~ 21841278 (+) True G38306
TU51650 lncRNA upstream 208711 21778658 ~ 21779093 (+) True G38301
TU51698 lncRNA downstream 1694 22013499 ~ 22016473 (+) True G38330
TU51764 lncRNA downstream 41554 22053359 ~ 22053669 (+) True G38375
TU51790 lncRNA downstream 240344 22252149 ~ 22252642 (+) True G38391
TU51791 lncRNA downstream 267149 22278954 ~ 22327073 (+) True G38392
TU51774 lncRNA downstream 341704 22353509 ~ 22354614 (+) True G38379
XM_022669446.1 mRNA upstream 3520 21959447 ~ 21984284 (+) True LOC103023313
XM_022669351.1 mRNA upstream 37127 21938629 ~ 21950677 (+) True sgms1
XM_007233994.3 mRNA upstream 109591 21873312 ~ 21878213 (+) True g6pc
XM_022669347.1 mRNA upstream 136823 21843965 ~ 21850981 (+) True ptges3l
XM_022669348.1 mRNA upstream 159677 21824379 ~ 21828127 (+) True LOC111192390
XM_022669448.1 mRNA downstream 58442 22070247 ~ 22097898 (+) True LOC111192422
XM_022669352.1 mRNA downstream 85946 22097751 ~ 22350082 (+) True prkg1
XM_007233996.3 mRNA downstream 356971 22368776 ~ 22371487 (+) True dkk1
XM_022669358.1 mRNA downstream 986874 22998679 ~ 23000623 (+) False LOC111192392
XM_022669357.1 mRNA downstream 987062 22998867 ~ 23000623 (+) True LOC111192392
XR_002649894.1 other upstream 692514 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 957007 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1829465 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2502889 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2656143 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 1735664 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 1735766 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 1735868 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 1735970 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 1736072 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile