RNA id: XM_022668879.1


Basic Information

Item Value
RNA id XM_022668879.1
length 6804
RNA type mRNA
GC content 0.46
exon number 40
gene id LOC103043447
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1759608 ~ 1782752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAGTTATTAAATGGGCTGATTATAGAATAGATAATAGAggataaagaaaacacagatcTGTTCACTGTTTACCATATTTATTGACATGATATTGCAATAGCCTAACGTTCTTAACTTAGGTTTTGAAAAAAGTGGCTTGGAGCCTGCAAACGGCCCTGGTAACAACAGCTCTGAGGAACCTCTCAAACTTCAATAATTGATATTGATTCACTCATaagataaaacctcacaacCTATATAGGTGTTCCCATTCCAAAACTGTCCCGTAATATAACTTTACACATCACAAGTCATTTGTATACTGTTATcttatgacttttggcattcgTATTTGTCCATACTGTCAGTTTTTAGTTGAGAACATGTGACGTAACATccaataaattattaatgattatttaacTGTTGATCAAGTTATCTGTCATTTTGGAAGCAGAATCAAAGAAGAGCATTAGTTGTGTGGTGTTCAGTATTGGACACTATCAGCATCAAAGGACAGCCCAAGGGCAGGTCTCAGGGATGGATCATTCTTCCTTGGCAAGACGAAGGCATTGTCTCTACGGCATACCACCCCACCCTGTCAGAGAGTGATTTCATCCAAATATAGGTATTCAGTTCTGACAGGATCCTGAAAGATCCTTATAAAAGAGAGAAGGCAGAGTCTACAGCACCAGTCCTGTGACTCCAGCCTCAGTCAGCTtTAAGGTTTTTGGACAAAAATCACTGAACAAGAGAGCTGTTGGAGGGACAGAAGGGAGATCCTTGCAGCCATGAGTACTGATGCTGAAATGGCTGTGTTTGGCGAGGCAGCGCCATATCTGCGAAAGCCTGAGAGGGAACGGATTGAGGCTCAGAACAAGCCTTTTGATGCTAAAACAGCAGTGtttgttactgattccaaagAGCTGTATGTCAAAGGCATCATCCAGAGCAGAGAGGGGGGCAAAGCTACTGTAAAAACAGAGGCAGGCCAGagTGTCACTGTAAAGGATGACCAGGTATTCCCAATGAATCCACCAAAGTTCGATAAAATTGAGGACATGGCCATGATGACCCACCTCAACGAAGCTTCTGTGCTGTATAACCTCAAAGAGCGCTATGCAGCCTGGATGATTTATACCTACTCTGGCCTGTTCTGCGTCACTGTGAACCCCTACAAGTGGCTTCCAGTGTATAATCAGGAGGTGGTAGTTGCCTACAGAGGCAAGAAGCGTCAGGAGGCACCACCCCACATTTTCTCCATCTCTGACAACGCCTACCAGTTCATGCTCACTGatAGAGAAAACCAGTCTATCCTGATCACTGGAGAATCTGGTGCAGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTCGCAACAATTGCAGTTTCAGGAGATAAGAAGAAAGAACTTGCAGCCTCAGGCAAAATGCAGGTGAAAGCTTTCAGATCCAGTCCCTTAGCACACGTTATTCTCAGGCTGGAGTTTTTATTTATCAGAGCTGATTATCTGGACTGCTCTCTACTGCAGGGCACACTGGAGGATCAAATCATCTCCGCTAACCCTCTACTGGAGGCCTTCGGTAATGCCAAGACTGTCAGGAATGACAACTCCTCTCGCTTTGGGAAATTCATCCGAATTCACTTTGGAACCTCAGGGAAACTGTCTTCTGCAGATATTGAGACTTACTTGCTGGAAAAGTCAAGAGTCACATTTCAGCTGTCTGCAGAAAGAAGCTACCACATCTTCTATCAGATCATGTCCAATAAGAAACCTGAGCTGATAGaGACACTGCTAATCACAACCAACCCTTTTGACTTTCCGTTTGTAAGTCAAGGAGAGATCAGTGTTGCCAGCATTAACGACAGTGAAGAACTTCTGGCCACAGATAGTGCAGTGGACATCTTGGGTTTCACGGTAGAGGAGAAGATCGGTATATATAAGCTGACCGGTGCGGTGCTGCACTACGGCAACATGAAGTTTAAGCAGAAGCAGAGAGAGGAGCAGGCCGAGCCTGATGGAACTGAGGATGCTGATAAAGCAGCTTACCTCATGGGCCTGAACTCTGCTGACCTGCTGAAAGCACTGTGTTACCCCAGAGTGAAGGTGGGAAATGAGTATGTCACCAAGGGACAAACAGTCCAACAGGTTTACAACTCTATTGGAGCACTGAGTAAGTCAGTGTACGAGAAGATGTTTCTATGGATGGTCATCCGCATCAATCAGATGTTGGACACAAAGCAGCCGAGGCAGTTCTTCATTGGTGTGCTTGATATTGCTGGGTTTGAAATATTTGATTTCAACAGTCTGGAGCAGCTCTGCATCAACTTCACCAACGAAAAACTGCAACAGTTTTTCAACCACCACATGTTTGTGCTTGAGCAGGAGGAGTATAAGAAGGAGGGAATAGAGTGGGAGTTCATTGACTTTGGAATGGATTTGGCTGCTTGCATTGAGCTTATAGAAAAGCCAATGGGCATCTTCTCCATTCTCGAGGAGGAGTGCATGTTCCCTAAGGCATCTGACACTACTTTCAAGAACAAGCTCTATGATCAACATCTTGGTAAAACAATCATTTTTCAGAAGCCCAAGCTTGTCAAAGGCAAGGCAGAGGCTCACTTCTCTCTGGTGCACTATGCTGGAACTGTAGACTACAACATCTCCGGCTGGCTGGACAAGAACAAAGACCCTCTGAATGAAACTGTGGTGCAGCTCTATCAGAAATCAGCTTTGAAGTTGCTGGCTTTCCTTTATTCCAGTTATGCCTCTACAGAAGagactggtggtggaggaggtggtggagcTGGTGGAAAGAAAGCAACAAAGAAGAAAGGCTCTTCTTTCCAGACAGTGTCAGCTCTTTTCAGGGAAAACCTTGGGAAGCTGATGACCAATTTGAGAAGCACTCATCCACATTTTGTGAGATGCCTTATCCCCAATGAGACAAAAACTCCAGGTGTTATGCAGAACCATCTGGTAATCCATCAACTGAGATGTAACGGTGTATTAGAAGGAATCAGGATCTGCAGGAAAGGTTTCCCAAGCAGGATTCTGTATGGAGACTTCAAGCAGAGGTATAAAGTACTGAATGCGAGTGTCATCCCTGAAGGTCAGTTCATTGACAACAAGAAAGCTGCGGAGAAGCTCCTGGGCTCGATTGATGTGGATCATACCCAGtataaatttggacacactaAAGTGTTTTTCAAGGCTGGCCTTCTGGGAGCTCTGGAGGAGATGAGAGATGACAAATTAGCAGCTCTTGTCACCATCACTCAGGCCCTGTGCCGAGGCTTCCTCATAAAAACAGAGTTCTCCAAGATGATGGAGAGAAGAGAGTCTATTTATATAGTTCAATACAACATTCGAGCATTCATGAACGTGAAACACTGGCCATGGATGAAGCTCTACTTTAAGATCAAGCCTCTCCTGAAGACTGCAGAGACTGAGAAGGAGATGGCCACCATGAAGGTGGAGTTTGCTAAGTGCAAAGATGACCTGGCAAAAGCTGAGGTTAAGAAGAAGGAGCTGGAATCCAAAATGGTAACACTGCTCCAAGAGAAGAATGACCTGCAACTTCAAGTTCAATCTGTAGCAGAGAACCTGTCTGATGCTGAGGAGAGGTGTGAAGGCCTCATCAAAAGTAAGATTCAGATGGAGGCCAAAGCCAAAGAGCTGAATGAGAGGCtggaagatgaggaggagatgAATGCAGAACTCACTGCTAAAAAAAGGAAACTAGAGGATGAGTGCTCTGAATTGAAGAAAGATATCGATGACCTGGAGCTCACTCTAGCCAAAGTGGAAAAAGAGAAACATGCTACTGAAAACAAGGTAAAGAATCTAACTGAGGAAATGGCCAACATGGATGAAAGCATCGCAAAATTATCCAAGGAAAAGAAAGCTCTCCAGGAGGCCCATCAGCAGACACTCGATGATCTACAGGCAGAAGAAGACAAAGTCAACACGCTGACGAAAGCTAAGAGCAAACTTGAACAACAAGTGGATGAACTGGAAGGTTCTCTGGAACAAGAGAAGAAGGTCCGTATGGATCTGGAGAGAGCGAAGAGAAAGCTTGAGGGTGATCTGAAACTGACCCAGGAGTCAATAATGGATCTGGAAAACGACAAGCAACAAatggaggagaagctgaaaaaGAAAGATTTTGAACTAAATCAGCTGCTCAGTAAAATTGAGGATGAGCAAAGTTTGGGAGCGCAGCTTCAGAAGAAGATAAAGGAGCTTCAGGCACGTATTGAGGAATTAGAAGAGGAGATTGAAACTGAACGTGCTGCACGGGCCAAGATAGAGAAGCAGAGGTCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTTGAAGAGGCCGGCGGTGCCACCGCTGCCCAAATCGAAATGAACAAGAAACGCGAGGCAGATTTCCAGAAGCTGCGGCGTGACCTCGAAGAGTCCACCCTGCAGCATGAAGCCACCGCTGCAGGCCTCCGGAAGAAGCATGCAGACACTGTGGCGGAGCTCGGAGAACAGATTGACAATCTTCAGCGTGTTAAACAGAAactggagaaagagaagagtgaATATAAAATGGAGATTGATGACCTAGTCAGCAGTATGGAGGCCGTGGCAAAGTCAAAGGCTAACTATGAGAAAATGTGCCGTGCACTAGAAGATCAGCTCAGTGAATACAAAACCAAGCATGAGGAGAACACTCGTCACCTACATGATATCAGTGCTCAACAAGCAAGACTGCAAACAGAGAATGGAGAATTTTCTCGGCAGCTGGAAGAGCGAGATGCAGTGATTGCTCAGATGGCCAGGGCCAAACTGGCCTTCACTCAACAGGTTGAGGACCTTAAAAGACAAGTGGAAGAAGAAACAAAGgctaaaaatgcTCTGGCACATGCCCTGCAATCTGCTCGCCACGATGCAGAGCTGCTCAGAGAGCAGTTTGACGAGGAGCAGGAGGCCAAGTCTGAACTCCACAGAGGAATGTCAAAGGCCAACAGTGAAGTGGCTCAATGGAGAACCAAATACGAGACTGATGCCATTCAGCGCACCGAGGAGCTTGAGGAGGCCAAGAAAAAACTTGCCCAACGCTTGCAAGACACAGAGCAATCGATAGAGGCTGTGAACGCCAAGTGCTCCTCCCTCGAGAAGACCAAGCAGAGActgcaaagtgaggtagaggacTTAATGGTGGATGTGGAGAGAGCAAACGCACAGGCAGCCACCCTTGATAAAAAGCAGAGGAACTTTGACaagGTTTTATCTGAATGGAAGCAAAAGTATGAAGAGAGTCAGGCAGAGTTAGAAGGAGCTCTGAAAGAGTCTCGTTCACTTAATACCGAGCTTTTCAAAATGAAAAACTCTTACGAGGAGGCCTTGGATCATTTGGAGACTCTCAAACGAGAGAACAAGAACCTGCAGCAGGAAATAACCGATCTCACTGAGCACATTGGTGAAAACGGGAAACTGATCCATGAGCttgagaaagcaaaaaaacaagtggACATGGAAAAGACGGAAATTCATACTGCTTTAGAGGAAGCAGAGGCCTCGCTGGAGCACGAGGAATCAAAGATTCTTCGCATTCAGCTTGAGCTAACACAAGTGAAGTCCGAGGTGGACAGAAAGCTTGCCGAGAAAGATGAGGAGACGGAACAGATCAAACGCAACAACCAGCGCACGATTGAATCCATGCAGTCCACGCTGGATGCTGAGATCAGAAGCAGAAACGATGCTCTGAGAATTAAAAAGAAGATGGAGGGAGACCTCAACGAAATGGAGGTTCAGCTGAGTCACGCAAACCGACAGGCAGCTGAGGCCCAGAAACAACTGAGAAATGTTCAAGGCCATTTGAAGGACACAACTGTTCTCCTGGATGACGCCATCAGAAATCAGGAAAACCTGAAGGAGCAGGAGGCTATGATGGAACGGAAGAACGCTCTGATGCAGGCTGAGATAGAGGAGCTGAGAGCCGCTCTGGAGCAGACAGAGAGAAGCCGGAAAATGGCTGAGCAGGAGCTGGTGGACGCTAACGAACGTGTCGGCCTCCTGCACTCTCAGAACACCAGTCTGCTCAATGCCAAGAAGAAGCTCGAGTCTGATGTAAATCAACTCCAAGGAGAGGTAGAGGAAGCTGTCCAAGAGGCGAGGAACGCTGAGGAAAAAGCAAAGAAGGCCATCACTGATGCTGCCATGATGGCAGAAGAACTGAAGAAAGAGCAAGACACCTGCGGTCACCTGGAGAGAATGAAGAAGAACCTGGAGGCATCGGTAAAGGATCTGCAGCATCGGCTGGATGAGGCTGAAAACCTGGCCAtgaaggggggaaaaaaacagctcCAGAAACTGGAGGCCAGGGTCCGTGAACTGGAAAACGAGCTTGATGCTGAGCAGAAGCACGGGACAgatgctgttaaaaatgttcGTAAATACGAGAGAAGAGTTAAGGAGCTCACCTACCAGACTGAGGAGGACAGAAAGAATGTCCTGAGACTCCAAGATCTGGTGGATAAGCTTCAGCTGAAGGTGAAAGCCTACAAGCGACAGGCAGAAGAAGCTGAAGAGCAGGCCAACACTCATCTCTCCAAACTAAGAAAGGTGCAGCATGAGCTGGAGGAGGCTGAGGAGCGGGCCGACATCTCTGAGACGCAGGTCAATAAGCTGAGAGCCAAGAGCCGCGATGCTGGAAAGgctGCTGAATCGGAGTAGAAATCTCTGAAGTGGATGATCACTTCCTTCTTATGCATGAATAGTAGAGTGATGTAGATCTTTTAATCAGAAATATATTAAAGCACAAGCTGTACAATGCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45246 lncRNA upstream 23631 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA upstream 23631 1735040 ~ 1735977 (+) False G33611
TU45243 lncRNA upstream 27650 1728121 ~ 1731958 (+) True G33609
XR_002649838.1 lncRNA upstream 202318 1547675 ~ 1557290 (+) False LOC111192343
XR_002649837.1 lncRNA upstream 202318 1547675 ~ 1557290 (+) False LOC111192343
TU45265 lncRNA downstream 86178 1868930 ~ 1871903 (+) True G33623
TU45408 lncRNA downstream 245581 2028333 ~ 2030101 (+) True G33737
TU45430 lncRNA downstream 302891 2085643 ~ 2087531 (+) True G33747
TU45432 lncRNA downstream 305207 2087959 ~ 2088160 (+) True G33748
TU45440 lncRNA downstream 334815 2117567 ~ 2119530 (+) True G33754
XM_022668869.1 mRNA upstream 37706 1598940 ~ 1721902 (+) True myocd
XM_022668873.1 mRNA upstream 37706 1598940 ~ 1721902 (+) False myocd
XM_022668874.1 mRNA upstream 37706 1598940 ~ 1721902 (+) False myocd
XM_022668876.1 mRNA upstream 37706 1598940 ~ 1721902 (+) False myocd
XM_022668871.1 mRNA upstream 37706 1598940 ~ 1721902 (+) False myocd
XM_022668880.1 mRNA downstream 1686 1784438 ~ 1799673 (+) True LOC111192346
XM_022668881.1 mRNA downstream 24259 1807011 ~ 1814034 (+) False LOC103043879
XM_007259075.3 mRNA downstream 24278 1807030 ~ 1814314 (+) True LOC103043879
XM_022668885.1 mRNA downstream 33486 1816238 ~ 1825383 (+) False LOC103042228
XM_022668886.1 mRNA downstream 33489 1816241 ~ 1827981 (+) True LOC103042228
TU45181 other upstream 371589 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 637736 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 638140 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 767215 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 774236 983191 ~ 985372 (+) False LOC103023950
trnaq-cug_1 other downstream 54753 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 268046 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2388299 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4836918 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4836919 6619671 ~ 6661251 (+) False LOC103029551

Expression Profile