RNA id: XM_022668928.1


Basic Information

Item Value
RNA id XM_022668928.1
length 1918
RNA type mRNA
GC content 0.39
exon number 10
gene id LOC103038619
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3884014 ~ 3893365 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGCTGTTATGTCTAAGTCTAAGATGCAGCATTTTATGCAAagattcttccacatgctctccTACGAGGTGGCCATACTTCACTCAGATAGTGTAATATTGTTTTGACTTGGAATTGCGAGACCTAAGataTGGCATCTGAGTTCTGCCTTAGTCTGACCAAATACTTCCTGTTCGTCTTCAacctggtcttttttcttttaggcTCAGCCCTGCTGTCTCTGGGATTATGGATCATGTTTTCTGAGACAGGTATTCCCAtcCCTGGTCTGGACTTCATTCCCCTGTCTCTGCTGTCCTATCTTCTGATCATCAGTGGAGCTGTCACTATATTACTGGGCTTCTTTGGTTGCCTTGGTGCTCTGAAGGAGGTCAAATGCATGCTGGCCATTTATTTCATCCTGCTCACTGTGCTTCTTGCGGCTCAAACTGTGGGAGGAGTTCTGCTCATTACTCAGAAGAGCACATTTCAGAGTTCTTTAGATGACCACATGACCAACATTATTAAGGAGTTTGGGAAGAATGACTCAAGTCTGGAAGATATAAAGCTGACTCTAGAGATCCTTCAGCATGAGGCTCAGTGCTGTGGCTGGACTGGGTCAGAAGACTGGAATCCTGTCCCCTGTTCCTGTTTCTATCTTGTCAATGTCACAGCTAATGCTACCAATCATAACTTTCTCTCTAAGACCTGCCCCTGTGATTCCTCATCAAATCTCACATGTCGAAAGCATGAACAGGCGTGCAAAGGCGTTGTTGATCAGTggctgaacacacacattcTGACCATTCTCATAGTGGTGTTTGCACTAGCTCTGGTGGAGtGTCTCCAGTGGGTGTGTCTGGTCATATTCTGTTGCCTTAGTTGCTCCTGTCGATGTTGTCCTGTAAGAAAGAGCCGTGGCAGCCATGTTCAGCTCTCCAGAGATTTCAATGTGGAGTATTGGCAAGGTATATTGCTTATTCTGGATGTGTGGTGAATAGGTTGGctgtgtgtgaatctgtgtgtttattaaatgcatgtgtgtgagtgtgtctctgCCTTTCTTGCCTGCTTCTCTTTTGCCTAAATGgtaattaatgtgaatattttttttttctgggacaCTGtaagattaatttaattatattattattttatttagtttgtgtCTGCATGCATACATGTTAGTggtggatgtaaaaaaaaaaaatctgctctcCTGATTTTGATTCATCTTTCccatatttaaagtaaaacattACCAAAATGTATTAACCAATAACAGCTCAGATAACTAAATAAGGTAATGTTTACCTGTCTAGTCCCggcatcatttatttgtatGATGGGTTtagctcaccatcagtgtgtagtcttgctaCCTTCCATTAAATcctcattttttatataaagactGATAAGCAAAagcataagagcaagttaccattttctttaTGGTAGAGTACAGCTGCAACAAAGTAATGCTGTACTTGATTAATTTTCCCATGTAATGGAAAATAAAGTATCAAAAGGAAaccaatgctattttattatgttttcagaattaaaaaaaaaacactaacgtTCTCTGAATAAGCAAGGTTTAGTCATATTGAGTGACTAATTAAACTATGATGTAGATACCTATTGATATAATgttaattagtatttttttaaataattaacttaaTATCAAAGTGAAGGTAGCCCTGATCTGCagtactacacactgatggtgtttTGCTTGTGCCCATTACACACTTTAATGATGCCAGGAGCCAGTAGGAAAGATGTACTTCTTGTGTGATGTGGTAAGAAAGTAAaggtacattttacatttacttctgAAAAGAGTTAAAAGATTTGCTTCCATAAAGGCAGAATTATTCCAAAAGgcagaatttgctgtgtacaCATCCCTAATATATGTACATGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_455620.2 lncRNA downstream 860 3880582 ~ 3883412 (-) True LOC103038927
TU46051 lncRNA downstream 41545 3840003 ~ 3842727 (-) True G34218
TU45973 lncRNA downstream 102531 3777900 ~ 3781741 (-) True G34166
TU45962 lncRNA downstream 155312 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 485159 3391629 ~ 3399113 (-) True G34101
TU46069 lncRNA upstream 9973 3903334 ~ 3903569 (-) True G34230
TU46071 lncRNA upstream 16928 3910289 ~ 3910512 (-) True G34232
TU46077 lncRNA upstream 31081 3924442 ~ 3924669 (-) True G34238
TU46079 lncRNA upstream 32120 3925481 ~ 3925690 (-) True G34240
TU46115 lncRNA upstream 109563 4002924 ~ 4003802 (-) True G34265
XM_007259151.3 mRNA downstream 14096 3861574 ~ 3870176 (-) True LOC103039858
XM_015608398.2 mRNA downstream 44715 3836623 ~ 3839557 (-) True ccdc189
XM_022668923.1 mRNA downstream 54909 3823918 ~ 3829363 (-) False cbx1
XM_007259156.3 mRNA downstream 54943 3823918 ~ 3829329 (-) True cbx1
XM_007259160.3 mRNA downstream 77296 3802912 ~ 3806976 (-) False LOC103042441
XM_007259143.3 mRNA upstream 194742 4088103 ~ 4097955 (-) True LOC103036928
XM_007259178.3 mRNA upstream 254827 4148188 ~ 4161856 (-) True LOC103021465
XM_022668932.1 mRNA upstream 326106 4219467 ~ 4440792 (-) True LOC103044368
XM_022668933.1 mRNA upstream 326106 4219467 ~ 4440791 (-) False LOC103044368
XM_007259180.3 mRNA upstream 698673 4592034 ~ 4703993 (-) True atrnl1
TU46045 other downstream 803 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 95080 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 95166 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 95208 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 1364521 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 2014613 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 2042474 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2572007 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2643660 6537021 ~ 6541364 (-) True G34953

Expression Profile