RNA id: XM_022668952.1


Basic Information

Item Value
RNA id XM_022668952.1
length 3494
RNA type mRNA
GC content 0.44
exon number 22
gene id acsl5
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5579330 ~ 5596438 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGCACACTGAATGGATATGATGCATTTCGAGGAGCCTGAAATCCTACCAGCACCTTGTTTGGGTTTGTCTGGCTGCAAGCAACACTGtcttccTGTAGGACTTACTGTGGAGGAGACTCTCTTTGTGGGCCTTTGCTTTCAGATACATTACCTGAGGAACAGCCGACTCCTGTACGACATACAGCTATTGGAAACGGTCTAAGACCATGTACTTCTTGATTGAGTTcctctgctctcctctgccCACCCCGGCGCTGGTGTTCTTTTTTGGACTTGCAGCAGTCGCCCTAATTTATCTCAACACCAGGCCGAAGCCTGTGCGACCACCTGTAGATCTGAACAGGCAGACTAAGGGCATTGCGGGTGGAGCCAGAAAGACAGCCCTTCTGAAAGATGACAACCTGATATCCTATTTACACGAAGATGCCAAAACTCTGTATGAGGTTTTCCAAAGGGGATTACACGTCTCAGGGAACGGACCATGCTTAGGGTACAGAAAAGCTGGGAAGCCGTACCAATGGCTGAAATACAAACAGGTTTCGGATAGGGCTGAGTATCTGGGCTCTGGGCTGCTGCACAGGGGCTTAAAACCTTCACCTGACTCATTCATTGGCATCTTTGCTCAGAATCGACCAGAGTGGATTATCTCTGAGCTGGCTTGTTACACCTATTCCATGGTGGCAGTTCCTCTATATGACACACTGGGTCCAGAGGCTCTGATATTCATCATTAACAGAGGAAGCATATCTACAGTCATTTGTGACAAGCAGAACAAAGCCGAGACACTCCTTGATAGTTGTGAGAAGAAACTCATACCTGTGCTAAACACAATCATCATCATGGATCCATTTGATGCTGCCGTAGGAGATAGAGCCTCCAAATGTGGAGTGGAAATCTTGAATCTAAAAGATGTGGAGgCTTTGGGGAAAGATAATATTAAGAAACCAGTGCCACCAAAACCAGAGGACTTGAGCATTGTGTGCTTTACCAGCGGAACAACTGGTGATCCGAAGGGAGCCATGTTAACCCATGAAAACGTGGTTGCAGATGCTGCCAGTTTTGTCAAAAGCTTTGAGAGTGCTTTTACTCCTCTCCCCACTGACGTGACTATCTCTTTCCTGCCGCTGGCTCACATGTTTGAGAGAGTTGTGCAGACAGTGCTGTATGGTGCAGGTGGAAGGGTAGGCTTCTTTCAGGGGGATATCAGACTGCTTCCTGATGACATGAAAACCCTAAAACCCACAGTTTTTCCAGTGGTTCCACGTCTTCTCAACCGTGTGTATGACAGGGTTCAGAGTGGGGCCCAGACTCCATTCAAGAAGTGGCTTCTGAACTTTGCAATTGAAAGAAAACACGCGGAGGTGAAGGAGGGCATCATCCGAAACGACAGCATATGGGACAAGTTCATCTTCCACAAAGTGCAGGAGTCTCTGGGGGGGCGTGTGCGGGTGATGGTGACAGGTGCCGCTCCAATCTCTCCCTCTGTGCTCAGCTTCCTCAGGGCGTGCCTCGGGTGCCAGATTTTTGAGGCATATGGCCAAACTGAGTGCACAGCTGGTTGCACCATCTCCCTGCCTGGGGACTGGACTGCAGGACATGTTGGTGTTCCTGTTCCATGTAATGTAGTCAAACTAGTAGACGTTGAGGAGATGAATTACTTTGCATCTAATGATGAAGGAGAGGTTTGTATAAAAGGGAAGAACGTGTTCCGTGGCTACCTGAATGACCCAGAGAGGACAGCAGAAGCGCTGGACCAAGACGGCTGGCTTCATACTGGTGATATCGGCAAATGGCTCTCGAGTGGGGTTTTGAAGATTATTGACAGGAAGAAGAATATCTTCAAACTGGCCCAAGGCGAGTACATTGCTCCTGAGAAGATTGAAAATGTCTATATTCGGAGTGCTCTAGTAGCACAGGTGTTTGTTCATGGGGACAGTTTGCAGTCCTCTTTAGTGGCTATAGTGGTGCCAGACCCTGAAGTGCTGCCTGGTTATGCTGAGAAGCTTAGCCTCAAAGGTTCAATGGAGGAACTGTGTAAAAACCAGCAAATTAAAAAAGCCATCATCACCGACCTCACCAAGCTGGGCCGAGAAGCAGGGCTGAAGTCATTTGAACAAGTAAAGGACTTGTATCTGCACGCTGATCAGTTCACTATAGAGAATGGTCTTCTCACTCCGACTCTGAAGGCTAAAAGACCAGAACTTTGCAAGTATTTCAAAACTCAGATTGACAGCCTCTACGCTAACATGCAGTGATGCTTCTAAGAAGACCTCAGGAGTTCCTGTGACCTGTTGAGCCCTAAGGAAGGGGGAACTGTACTCCATGAACTGTTTAGTTCCTAAGCAGATTCTACACATTTCCATACTTGCTGCTGAAGACAATGACAGAGTTTTAGTGAAGAACTTGGAGATAAACATTAATGAAGCTGTATGTGTATTTATACTTACTAAGCACTGAAAGTGGAGatcaatgactgtatataagcatggaCAGCACGGCAtctcttaaaagtgaaaaacaaaacaaatctgcTTGCAGTATAATTCAAGATtgaagatttttattgtcacgtcacagagtacaggtgtacatgtgagtgaaaaacttgggtgcagatgTGTAGCTCTAGGCATTCCTATAATTTCCCCCCTCTAATCCATATTGCCATCTCCAGAATCTAATTCCAACAGTTGATTTAGCCTGTTGTAATATCtccagaaatattttttttgtaatattttgttacTATATCATAAGAAGGTGGGGTTACACTTTGCAACAAAGTGATCGACAGCTTTGGTTGAAATGATCATCATCATTATGTGAAATAGCCTGTTGTAGTCAAGCTGTCAGGCAATTTGCTAGTTAATCACATTATATTGATCATGTAATGATGTGCTGTTGGTTACATGAACACACATTCTATATAcaaaattatttgtaatttttaactgCTAAGTCTGGTGCTCTGCCATTAAACTAGACCACGGAACCTTTGATTCATCTTGTTGGCAAATGTGGCTTCAACTCTGATACTTGATATTTGATGCAAATGTAAACTggtttatattaaaatacatgaaCTGCAGTTTTAGTGTTTAAACAGCAATGAAGGTGGCCTGAGGCAGGTGCGCTCTGGGAGATGGGGGTGGGTCTACCAAATGAGTTTGCATAGCTGGCCCCGCCTCCAGCTCGGATACTATTGCACAAACTTTGGTTGGACATTTGACAACATGGCAGATGTTTTAGCTTCTTTTCcacagaacagaagagaatgaAATCACCACTTCCATGCTTGTATACAGTCATTGGTGGAgactattaaattaatattatttcacttgttttatatgaaaacataaacagacaaacagatggTTATTGTTCAGAGAagatttgtttacttgtttttgaAATCTGTATTGTGAGGTTGACAtcagttttacaaaaataatcaaaaataaaattaaagtatttttctctACAAAGAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46673 lncRNA downstream 4572 5573473 ~ 5574758 (-) True G34688
TU46666 lncRNA downstream 188010 5391095 ~ 5391320 (-) True G34682
TU46475 lncRNA downstream 385471 5191033 ~ 5193859 (-) True G34556
TU46458 lncRNA downstream 426917 5151372 ~ 5152413 (-) True G34543
TU46460 lncRNA downstream 428367 5150310 ~ 5150963 (-) True G34544
TU46695 lncRNA upstream 48468 5644906 ~ 5645105 (-) True G34708
TU46700 lncRNA upstream 62586 5659024 ~ 5659904 (-) True G34713
TU46707 lncRNA upstream 80980 5677418 ~ 5681939 (-) True G34719
TU46759 lncRNA upstream 266019 5862457 ~ 5867932 (-) True G34760
TU46770 lncRNA upstream 290600 5887038 ~ 5891991 (-) True G34765
XM_022668946.1 mRNA downstream 7696 5400928 ~ 5571634 (-) False vti1a
XM_022668948.1 mRNA downstream 7696 5400928 ~ 5571634 (-) True vti1a
XM_022668947.1 mRNA downstream 7697 5400928 ~ 5571633 (-) False vti1a
XM_022668949.1 mRNA downstream 7697 5400928 ~ 5571633 (-) False vti1a
XM_007259226.3 mRNA downstream 216844 5260389 ~ 5362486 (-) False tcf7l2
XM_022668954.1 mRNA upstream 3930 5600368 ~ 5687159 (-) False tectb
XM_022668953.1 mRNA upstream 10183 5606621 ~ 5687158 (-) True tectb
XM_007259249.2 mRNA upstream 175181 5771619 ~ 5803122 (-) True nrap
XM_007259251.3 mRNA upstream 222284 5818722 ~ 5822431 (-) True LOC103041412
XM_007259256.3 mRNA upstream 246540 5842978 ~ 5852808 (-) True dclre1a
XR_002649848.1 other downstream 216845 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 1695861 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1790138 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1790224 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 1790266 3783408 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 311536 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 339397 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 868930 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 940583 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 1023242 6619680 ~ 6653585 (-) True G34981

Expression Profile