RNA id: XM_022669030.1


Basic Information

Item Value
RNA id XM_022669030.1
length 5611
RNA type mRNA
GC content 0.43
exon number 23
gene id LOC103032713
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6886709 ~ 6993101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagctgAGCTAGTTAGCTCAGAGCGCTTAGCAACCGCGTTAGCGACCGTTAGCTTGTGCTTGAGTTTGTTTAGAGAAGCTCGACGAGCTTGGTGTCGCTGTGCTTTAGGAGAGCTGTTTTATTGGTCGGAGTGACTGGAACTCATCAGCCCGTGTGTAGCTGGAGCTGCGGCTAGCGGCGCGAGAGAGTGGGATACCCGACTCCAGAGCTCCGTCAGCCAGAGCTGCAGCCTGTGGGAGAGAGAGCCGACTTTGAGAAGGAGCCAGAAAAGACTCAAGCATCTCATTTATCAGAGGACCACACATGGTGTCTTCCACATAACTGGGACCGTTTCAAGGCTGCAGATTAAAGATGTGCTGGAAGATTCCACCCAGTTGCTCAGCACACTTCAGTACTCTGGGCTCTGTGCCATTCGGCCCTGCAGCTCCTTCACCTGGTCAGCTGTGAGTGTCAGTCTGGAGATGTGTCAAGGAGTCTGTGTTGAGAGGGCTGAGGGGCTGccttTCTCTCTGGAACACATGAAATTCGGAGGCTCTCCTCCCCGAACACGAGCACAGCAGTCATCGCAGCAGCGGTTGGAGAAACCCCCTCCCCACACAGCAACATGGCCACAATCGTAACCTCGACCAGGTTTACGGATGAGTACCAGCTTTACGAAGAGCTCGGGAAGGGTGCCTTCTCCGTGGTGCGCAGATGCGTGAAGAAGTCCACAGGCCAGGAATATGCTGCTAAAATTATCAACACAAAGAAACTATCAGCGAGAGATCATCAGAAACTGGAACGAGAGGCCCGAATCTGTCGCCTGCTCAAACACCCCAATATTGTCCGACTCCACGACAGTATTGCAGAGGAAGGTTTTCATTATCTGGTCTTTGACCTTGTGACTGGGGGGGAGCTGTTTGAAGACATCGTTGCCAGAGAGTATTACAGTGAGGCTGACGCGAGcCAGTGCATCAATCAGATCCTGGAGAGTGTCAATCATATTCACCAGCATGACATTGTGCACAGAGACCTCAAGCCTGAGAACCTGCTTTTGGCCAGTAAGATGAAAGGAGCAGCAGTGAAGCTAGCTGACTTTGGACTGGCCATTGAGGTTCAGGGAGACCAGCAGGCATGGTTTGGATTTGCTGGTACCCCTGGCTACCTATCTCCAGAGGTCCTGAGAAAGGACCCCTATGGCAAACCTGTGGATATTTGGGCCTGCGGTGTGATTCTATATATTCTGCTAGTGGGCTATCCTCCCTTCTGGGATGAAGATCAGCACAAGCTGTACCAGCAGATCAAGGCTGGAGCATATGATTTTCCTTCGCCTGAGTGGGACACAGTCACCCCTGAGGCCAAGAACCTCATCAACCAGATGCTGACCATCAACCCAGCCAAGAGGATCACTGCTGAGCAGGCCCTCAAGCACCCATGGGTCTGCCAACGGTCAACAGTGGCATCCATGATGCATCGCCAGGAGACTGTGGAGTGCCTGCGCAAGTTCAATGCCCGAAGAAAACTCAAGGGAGCTATCCTCACCACTATGCTGGTCTCCAGAAACTTTTCAGTGGGCCGGCAGCATACCAGCCCTGCTGCTCCCACCACCAGCACTGCCGCGCTTGCACAGGAAGCATGTAAAAGTTTACTCAACAAAAAGGCAGATGGAGTTAAGCCTCAGACAAACAACACTAAAAACAGTGTAGTGAGTGCCGTAGTGAGTGCCCTGAAGGAGAGCAACTCAGCCTCCTCTACACCAATGGAGCCACAGACCACAGTAGTGCACAACCCAGCAGATGGCACCAAGGGCTCCACAGAGAGCTGTAACACCAATGAGGAAGAGGATATGAAAGGTAGGAAAGTTCGTAAGCAGGAGATCATCAAGATAACGGAGCAGTTGATTGAGGCTGTGAACAATGGAGACTTTGAAGCCTACACGAGAATCTGCGACCCTGGCCTGACTTCGTTTGAGCCTGAAGCTCTGGGTAATCTGGTGGAGGGGATGGATTTCCACAAGTTTTACTTTGAAAACTTATTAAGTAAGAACAACAAGCCAGTGCACACCACCATCCTGAACCCCCATGTGCACCTGATTGGAGAGGATGCAGCCTGCATTGCATATATCCGACTGACGCAGTACATCGATAGCCAGGGCCGTCCGCGTAGCTGCCAGTCTGAGGAGACTCGCGTGTGGCACCGCCGAGACTCCAAGTGGCTCAATGTGCATTTCCACTGCTCAGGAGCGCCAGCTGCACCCTTACAGTGAACCCTCCAGGACAAAGGTTGCTTGGATTCTTGAGTGATGGGAACGTTTCTTCTTTGTGGTCAGATTGGACACATAGAGGCCGGCTGGACGACAGCAAGCTACAGAACATGCCATTGAAGAAATTCGGTAACATCGAGTCCTACTGTCAACATCACCTATCCTGTTTAACCTTTGACCAATAGGAACCGGCCGCGGCCCCACCCACGGGACGGTGCATGCATCTGACGCCCACATGCGGGCGCTGTCTAGTCCTTTCCCATGGAATCATCTTTTTGCCCGTTAAAGATGTCTAGAAGGTGTTGTAAGTACTGATCTATGAATTCATAAATATGCTGTACattgtaaacaaacaaacaaaaaaaaaagactagagAAAAACACCAGAAGCTACAATCAATTTTGAAAAGCATTTATGTAAGTAAAGTGGGACGGGGAGGGAAGGGGCAgtacaaaatgaaaaaagagggggaaaaaaaaaacttaaacctaaactgGTAAAGTTTAAAAGGGAACGATCTTAAATCCACCATCTTGTACACTTTGTAGATTTTTGAATACGACCTGTTTAAAGAATTAAGGGAATGTCAACTAATCAGAAAACGAGcgtcattaaaaaaatctgcagaGTTTAAAAGTTCTTCATATCAAAAAGCACCAAAGTGTAGTCTTTAGGCTTTTAAAGGAGTGTTTCTGTGTgcgttgtattttattttttttattgttttaaaccaAGGTCTGTGGGAAAGTTTGAGTGGTTCTGGGTTTTAGTATTCTGTGTAATGtggaactcttttttttttttttttttttccttttggctGAGGCTGTATTGGACAGATAGTATCTTGTGTTAAACGATTTGAagttttaaaactaattttcaagcttttttttaatgttaaacttACTATACGTGTAAagttctataaatatatatttaaaagaaatgaaGTGAAATAAGGAACACCTCCAGGGGTGTGGGAAACGACTTTTTCATGTGGATCtgttgtgtgtgcgtgcgtgcgtttGTATGAACTTGTTATAAACCTTACACACCACACTATTACCTTAGGCTTACCGTAGACTGCTCCACCTCTAGCTGAATGAGTACAACAGTGTTTGATAGCCCACAGAAGTGCACAGACTGCACTCTGTCTAAAATagcactactactactgctagtcATAGAAAGGCCCTGTTCATTAATAGGAACACGTGTGCCTCCTATTAATGCCACACCACCTGCCTCTCAAATCCCATTTCCAGCTCGTTCACAATTCATGGTtgttgtagtagtaataatgCCAACCATCAGGAGCTGTGGTAGAAACGTCATCTAGATGGTACCATCGTAAGGAAAGGGAGGTTAGAGGGGTGTCAGTTTGAGGATGGGCGTCCAGAATGCTCAGAATAGAGACTAAAATACATTCctgggtttaaaaaaagaaaaaaatgtatggatGCATGTTAGGGCTGGCTAGATATTTGcaatagaaaatgtattatgatacaggggttacaattcaGTATATTCCAAACGACACTACATTTAAATCTAAGTCAAACAAAAGTTAACTTTTTATTCAATCAGTAATAACAATGTGATCTAAGGAGAGTTTAAAGCTGCCCTCTAGCATTTAGGGTTTAATCACAATACAAATCTAATAtgtgaaacaaaaataatttaaaatcagtTCTAGGTTTTTGAAAAGCAATACACTATTGCAAACTCAAATATTGGGATACTTTAATATCTATTTTCTTACACTCCTAACATATGTTTGGTCAGAGTGAATAGAGGCTGGAGCATTGGCCAAGGATATGAAGCATTCTTCTTGtgtgacagacacacacactttctattTAGATTAATAGTGGACAACAAACACCCACACTCAGATCCACACATGCCTATGTTACACATGCTCTTACTGGAACTGTTAAAGTCTGTGACTGTTCTGCTCATGGTGGTCTCGTCTGAATCACTCTGTTCTAAATGTGTTGTACTTGTGGTTCACGTTGGTGATGGATTAATTTGCTCACTTGTTAATAATGCTGTGTAGTACACACATGAAAGCCATCATTAACAtacagaaagaggaaaaaagagcaaTGGCAAGTCTCCTCACCCTCACTTTACATGAAATATTGACATTTTCTCTTTTAGGATCACTTACGGTTTTTCACGTCTTGTTTTTTTGCGGGTCTTAttttaagaagaagaaataCAGGGTTCAAAGCACTGGTGAATTAAGGTGAACTATGTAATTGAAGCTTATGGTTCTTATTACAGCACAATTAGCCTGTTCAATTTCCAGTTTAGGTGACCAATAGAGTAAACatctacaaaataaaacaactttggATATAAAACATAAGCTAAATAAAAGTACTGTAAGTAAAGTACTGTAAAGTGTTCTGTACCCCCTGAATATAGGATTTGttccccttaaaaaaaaaaaataaataaaaaaaaaatcctttatagGAGTGTAGGGCTTTGGTACATATCAGCACTGTAACTCTGCACGTGTGAGCGTgaatgcgtgtgtgtatgtgtgtgagctcATCACATCACAAAGCCCTCTTTAGTGTAGTTGTCAGACTCTGTGATGCTGttttaagcttattttttttctttacaactttattcttttTGCGCTTTGGGGAAATCACTGCCTTGCCTGGCTGAGTCAGAGTTACATATTTGTAAattaattcttcttcttctttttttttttttatccattcaaGAGCTCTATAGGAACTGAAAGGAAACGGAAAGATGAACAACACAAAAGCAGACAATAAACTGATAGGCTGTTTAGACTTACAAAGCAAAATCCCCCCTTTTCCCAAAGCTAGGAATGAACCTTTGTCCAGGATCTGCCCATTACGAGGGAAATCCTAATatgcagcttaaataaaaggacGAATATGCATGTCTACTTTTCTtggtaaatcttttttttttcttttaactgtCTGTGCTTACTTGATTAAAATGGGGTGGAAATCTGTTCTAGTTGCATCACTGAAATGAAAACCACTCCACTGGGGGATTATAATGTaccacatttaaaaagaaaaaaggacaaaaaataaatatatataataaaatgaatcgAGTCTCAGCTTGGAATGCTCCCCTCATTCAGAGTAAAACTATTGCATTGTAATGGTATACTATTGGGCTACGTATATACTCGGAGTTTAAACATGGATGCTGGATTTTGCATGatcatacatttaataaaaccatgAATTGACAACTATCAAGTGTTTGTCTGAATGTTAGTTCATCATAGCTTTGTTATTATTGGAACTTGGATCTTggacatatttaataaaaagacCATTTCAGCA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0003146 heart jogging biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47100 lncRNA downstream 155210 6730942 ~ 6731499 (-) True G34998
TU47099 lncRNA downstream 157555 6728861 ~ 6729154 (-) True G34997
TU47093 lncRNA downstream 197099 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA downstream 197099 6688341 ~ 6689610 (-) False LOC103030829
TU47089 lncRNA downstream 205800 6680351 ~ 6680909 (-) True G34988
TU47229 lncRNA upstream 41834 7034730 ~ 7035818 (-) True G35077
TU47231 lncRNA upstream 43365 7036261 ~ 7040642 (-) True G35078
TU47266 lncRNA upstream 71629 7064525 ~ 7066706 (-) True G35094
TU47273 lncRNA upstream 84329 7077225 ~ 7077629 (-) True G35099
TU47316 lncRNA upstream 129587 7122483 ~ 7123019 (-) True G35135
XM_007259315.3 mRNA downstream 170970 6711314 ~ 6715739 (-) True LOC103031455
XM_015608325.2 mRNA downstream 175489 6705068 ~ 6711220 (-) True LOC103045903
XM_007259313.3 mRNA downstream 190418 6688167 ~ 6696291 (-) True LOC103030829
XM_007259305.3 mRNA downstream 308650 6567389 ~ 6578059 (-) True bicral
XM_007259330.3 mRNA upstream 9244 7002140 ~ 7020769 (-) False sec24c
XM_007259327.3 mRNA upstream 9244 7002140 ~ 7020769 (-) True sec24c
XM_007259331.3 mRNA upstream 9244 7002140 ~ 7020768 (-) False sec24c
XM_007259329.3 mRNA upstream 9244 7002140 ~ 7020768 (-) False sec24c
XM_022669034.1 mRNA upstream 76313 7069209 ~ 7075841 (-) False faap100
TU47076 other downstream 233124 6619680 ~ 6653585 (-) True G34981
TU47043 other downstream 345345 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 373008 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 947309 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 958555 5907974 ~ 5928154 (-) False ccdc186
TU47717 other upstream 1931932 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2211674 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2433179 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2433940 9426836 ~ 9431164 (-) False rpl38
TU47869 other upstream 2433940 9426836 ~ 9431228 (-) True rpl38

Expression Profile