RNA id: XM_015608355.2


Basic Information

Item Value
RNA id XM_015608355.2
length 2080
RNA type mRNA
GC content 0.44
exon number 14
gene id sfxn2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4819922 ~ 4847408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTCTGATGATGATGGAGATGGCTAACAGCAAACTGCCAATTCTGATGAGACAAGAAAAAACACTAACAATGCCAGAGCATCACAAGcCGCCTAGTGTGAGGATCTGCCCCCGGCTGTGATTGGAGGACACGGTGCCACGTGTTCAGAGGGAAGTTCAGCACATCATCATCGGGTGCCAGCTAGAAACACGTTGTTGTGCTGCTGAAGCCGCTAAAGCTCGGGACCTGCACTGGTGTAAGGAGGGGTAACTCACTTTCTCTGCTGTGTTGATTTACTGTCGGGAGACTGAAGACACCATGGCGGATCTGACTGGCTTCAATATTGACGCCCCGCGCTGGGACCAGTCCACCTTCATGGGACGTCTCAAACATTTCTTCAACATTACAGACTGCCGCACTGCCCTCCTGCCTGACTCCAAACTGGATGAAGCCAAAGCCTTAGTAGAGAGCTGCAGAGCAGGGTCTACCCCTCCAGGTACCACTGTGGAACAGCTGCATTATGCCAAGAAGCTCTATGACTCAGCATTTCACCCTGACACTGGCGACAGGATGAATCTGATCGGCAGAATGTCTTTCCAAGTGCCTGGGGGCATGGCCATCACGGGCTTCATGCTGCAATTCTACAGGACAGTTCCTGCTGTGGTGTTTTGGCAGTGGGTTAATCAGTCCTTCAACGCTCTGGTCAACTACACCAACCGCAATGCGGCTTCTCCAATCACACCAAAGCAGATCGGTGTGGCTTATGCAACAGCGACAAGCACTGCACTGGCCACTGCTGTGGGTCTGAACCTCTACACAAAGAAAGCTCCGCCTCTGGTGGCTCGCTGGGTGCCTTTTGTAGCCGTGGCTGCAGCTAACTGTGTAAACATCCCCATGATGAGGCAACAGGAAATCCTGAATGGCATTGCTGTAACAGATGAAAATGGCAATAAGCTCGGCCACTCTAGGAAAGCTGCAGCAAAGGGCATCACACAGGTGGTGATTTCTCGAGTCACCATGGCAGCGCCAGGCATGATTATTCTTCCTATTATAATGCAAAGACtagaaaaatacagatttatGCAGaaaattacaTTTCTCCATGGACCATTGCAAGTTATGATGGTTGGAGTATTCCTGATCTTCATGGTGCCAGCGGCCTGTTCACTGTTTCCACAGCAATGCTCTATGGCTGTGTCCAAGCTGGAGCCAGAGCTCAGAGAGTCCATCCTTTCCCAGTATGGAGAGAAGGTCAAATATGTCTACTTCAACAAGGGCTTGTGATGCTGGTTACCCTAATGCTTCTAGGGTTTGAGGGACTGCATGAGGTGGACCATATGGATCATCATATTTTATGCTTGTATGCAGACATGTGGTAcatattgctgttttttcttaatgtttaaCAATTGATATTGACAAAAATCttgtaaggaaaaaaaaagaatggctTCAAGTTTGGGCCTTCAGCCCTCTCTCCAAAGACCTCTAGACTGTCTATCTTTATTACTAACTATGGCTGGGGAAAAAGCTGTAGAAAAATAACTACCTTTCTCTGGTAAGATGCAAGTTGTAACTGAATAAAGTGTAAAGTGTGACTTCTAGTGGAAGGGGCTGGAATTGTGGATTTAAAACATTGGTTTACATAAATTAATACACTGAAaattattttactctttttattattattattattattggaccAATCTGCTGAAATTGGTCAGTAAGCCTTTCATGATGCCTGTAGTCAGTGTTGAGTAATTCTATACATAGACTTATAGAAGTTTATAGATTTTAGAGCCATTCTTAATTGTGAGtaatgagagagtgtgtatgtgatgATTGTGCTCAGCATGCCAATCTCTCAGGAACTTTAATTTAAAGGTTTTAAGCTTTAAGGCTTAATTTAGCACAGGGAAATGTTTACTGTATGATTTAGTACTTTATGGCAACCGATCTGTGAGTAATTATACAACGCAAGATGTTACAATGTGTGTAAGGCCAAATGTATGAATATGGTAAAAGTGTTATGGGAGATTTGTTAATGACCAGTGTTCACATTGTGCcttatattaaaagaaaaaagaacttGAAATAGAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23501 SFXN2; sideroflexin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46302 lncRNA downstream 617 4816151 ~ 4819305 (-) False G34422
TU46315 lncRNA downstream 44930 4773813 ~ 4774992 (-) True G34429
TU46263 lncRNA downstream 191747 4627682 ~ 4628175 (-) True G34385
TU46259 lncRNA downstream 233064 4586445 ~ 4586858 (-) True G34381
TU46218 lncRNA downstream 310670 4461877 ~ 4509252 (-) True G34342
TU46349 lncRNA upstream 75840 4923248 ~ 4924233 (-) True G34458
TU46355 lncRNA upstream 79580 4926988 ~ 4927235 (-) True G34464
TU46361 lncRNA upstream 90683 4938091 ~ 4938394 (-) True G34470
TU46366 lncRNA upstream 91599 4939007 ~ 4941347 (-) True G34473
TU46370 lncRNA upstream 96492 4943900 ~ 4954001 (-) True G34475
XM_007259183.3 mRNA downstream 28188 4711100 ~ 4791734 (-) False LOC103022618
XM_007259181.3 mRNA downstream 47124 4711100 ~ 4772798 (-) False LOC103022618
XM_022668934.1 mRNA downstream 56853 4761586 ~ 4763069 (-) True LOC111192353
XM_007259182.3 mRNA downstream 76469 4711100 ~ 4743453 (-) False LOC103022618
XM_007259184.3 mRNA downstream 80744 4711100 ~ 4739178 (-) True LOC103022618
XM_007259190.3 mRNA upstream 5599 4853007 ~ 4868129 (-) True LOC103024913
XM_007259191.3 mRNA upstream 22641 4870049 ~ 4878759 (-) True mfsd13a
XM_007259194.3 mRNA upstream 80108 4927516 ~ 4930707 (-) True mrpl43
XM_022669430.1 mRNA upstream 124290 4971698 ~ 4995913 (-) True psme4
XM_022668935.1 mRNA upstream 252560 5099968 ~ 5112968 (-) False entpd1
TU46045 other downstream 936453 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1030730 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1030816 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 1030858 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 410474 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 1060566 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 1088427 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 1617960 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 1689613 6537021 ~ 6541364 (-) True G34953

Expression Profile