RNA id: XM_022668841.1


Basic Information

Item Value
RNA id XM_022668841.1
length 1815
RNA type mRNA
GC content 0.51
exon number 6
gene id slc16a12
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 918 ~ 19820 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacccacataaacacacactcacacataggCATGCTGGATGTTCCTGCAGCTGCCGGAGGCAAACTTGGGCGGACCGGCTGCTGGAAAGATGCAGGAGCTGCTGAATCGATATAAAGTGAGGAAAGGTCAGAGTTTCTGAACTGGAGCTGAGAGACTGGTGGAGCTTCATCCCAATgaagagctgctggagctctggAGCAGCACACTGCCTTCTTCCTTGATGCATCTCCATCTTTTTCGTTGAATTTCAAATGCACTTTGCACGCGATTACTCTGGAACAGCATGGATCCATTCACTTGTAGACTGCACCACCATGCTCTGTGCTCCACTCGGCAGCCTGATTGGGAATCATCTGTCGTGTCGAGTGGCAGTGATTCTGGGAGGATTTCTGGCCTCTATTGGTTTAGTGCTCAGCTCCTTCGCCACCAGTTTGGAatacctctacctctctctgggGGTCTTAACAGGGCTGGGCTTTGCCCTCTGTTACACACCGGCCATTGCTATGGTTGGAATTTATTTCTGTGAGCGGAAGTCGTTGGCGTATGGCATCGCCATGTCTGGCAGTGGCATTGGGACCTTCATCCTGGCACCTGTGGTGCAGATGCTCATCGAGCACTACTCATGGCGAGGGGCCCTGCTTATCTTAGGAGGCCTGGTGTccaacctgtgtgtgtgtggagctctGTTACGGCCCATCACTCTAAAGGAGGAGGAAGCCTGCCCCCTGCCTGTGGACTCTGAGTGTGGCTACAGCACCAAGCCTCTGGTGGCCATCAGCCCAGCGGAGGAGAAGCAGCTGGAGGCCGAGAGAAGCAAACAGCAGAGAGACAGTAAGCAGCGCTGCCTGCAGTCCATGCAGGAGTACCATTTCCTGCTCATGCCCGACTTCCTGGTGCTGGCCGGCTCCTTCTTGTTCCTGGCCAGTGGCTGCAGCCTGCCGTTTGTTTACCTCGTGCCCTACGCGCTGGACGTGGGGGTCAGTCACCACCACGCCGCCTTCCTGATGTCCATACTGGGAGTCATTGACATTGTTGGCAACATCACGTTTGGCTGGCTCACTGACAGGAGGTGCCTGAAGAAATACAGGGGCATTTGTTATATGGTTGCTGTGGGAATGGAGGGTCTCTGCTGCTTCCTCATCCCTCTTCTTCATACATTCGCCCTGCTGGTGCCTTTCTCTGTGCTCTACGGCTATTTTGATGGTGCTTACGTGGCCCTGATACCTGTGGTGACGTCAGATGTGGTGGGGACGACGTACCTCTCCTCAGCTCTCGGGGTGGTTTACTTCCTACATGCTATTCCATACCTGGTTAGCCCACCTATTGGAGGCTGGTTGGTGGACACCACGGGGACCTACACAGCTACGTTCTTCCTGAGCGGCTTCGCCCTCCTCTCCAGCGCTCTCCTGCTGTGCACCGCCAACATCATCCGCCACTACCAGAGAGTTCAGCGAAACAGGAGAAGTAAAAAGCCCACACTGGAACAATGTGAAGCCCAACAGGCAGACTTTTATACAACCAAAAATAAGGACTTATTGATCATTAACACGGCCACCTCATAGTGTCAGTCgtaatgtttgtgttttctatttctctacacttatttttgtaaaaaaaaaacttaagtaaataaataatcaggTATGTGAACTGCTGTAGTAAAAAACTGTAGCATCACCACCACACTTTAACTGTCTGTTCACTTAATGTGCCTTTTCTGTTTAGCTgtctatctgtttatctgtcacggctttcaaatgaaaagcTCAATACAAAAAAGGTGAGTTAAAGCTGGTGCATATTGCATCAAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44739 lncRNA upstream 207177 226997 ~ 231863 (-) True G33270
TU44742 lncRNA upstream 220337 240157 ~ 270391 (-) True G33272
TU44747 lncRNA upstream 255230 275050 ~ 275410 (-) False G33277
TU44749 lncRNA upstream 255230 275050 ~ 276680 (-) False G33277
TU44750 lncRNA upstream 255230 275050 ~ 276680 (-) True G33277
XM_007251147.3 mRNA upstream 1626 21446 ~ 37478 (-) True pank1
XM_022668843.1 mRNA upstream 52314 72134 ~ 96170 (-) False LOC103039921
XM_022668842.1 mRNA upstream 52314 72134 ~ 96170 (-) True LOC103039921
XM_007251310.3 mRNA upstream 81420 101240 ~ 109740 (-) True LOC103039609
XM_022668845.1 mRNA upstream 268170 287990 ~ 299000 (-) False ppp1r3c
TU44781 other upstream 369649 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 369649 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 369649 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 1105645 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 1106575 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile