RNA id: XM_022668842.1


Basic Information

Item Value
RNA id XM_022668842.1
length 5487
RNA type mRNA
GC content 0.46
exon number 30
gene id LOC103039921
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 72134 ~ 96170 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGGACCGCGGCAGCCGTGAACACAACAGTACTAAACTAGGCGCTCGGTACATATTATGAACAGGGTTAGATTTAAACCGGTTTAAAACTAGCTAAATAGTCTTGCTAGGGATAGTTGCGTGTTAGTTTATCTGTAGTTACACAGCCAATATGCGTTTTAGTTCGTTTTAGCTTATTTGAGCTGCTTTTGAAGCGTGTAGGATAGACGCaggttaacgttagctaggctGGCTACGCTAGGTTACGTCCTTTCAACTGTGTTTTAAGCTAGCTTGGTTTGCTAGTTAAATAATAAGATGAATAACTAATTTATCATCACACTCCGCTTCTTTTACTATGGATACAGTCTATCAGCGGTAGCAACGATTAATCAGGGAAGTcttagcgttatttaagAGTCATGGAGTCCAGCTTGAATTATAAACCGGAGAGAGTGGGAGCTGTCACTGTGGAAGATCTGAGAAAAGATCTGTTTGTCGAATTCTCCAAAATACCCACAACCCAGGACTCTGTGTTATTGGAGAGGGAGCATTTGCAGGTCTACCTCAGGATACGCCCTTTTACCTCCACAGAGAGTGATTTCGGCGAATCACAGGACTGCATTTCAATCGAGTCTCCAGACACTGTGGTTTTAAAGGCTCCAAGATCATCTCTAACAGCCAGGCAAAGTGAGAAACTAGGACCTCAAATTGCACAGAGATTTCAGTTCTCAAAGGTGTATAGTCCAGAAACTACACAAAGGCAGATATTTGATGGAACAACAAAAGCTCTTGTGAAAGATGTTCTGGCAGGACAAAATTCCCTGATTTTCACCTATGGGGTTACTAATGCAGGGAAAACTTTCACATTTTtagGACCTGAAACCGATGTGGGAATTCTGCCAAGGTCACTGAAAGTGATCTTTAATAGTATTGAGGGAAGAATCTACACTCAGAATAACATCAAGCCCCACCGCTGCATAGACTTCACTCGACTGACTAAGGATCAGCAGGATGCAGAGGCTACAATTAAGAAAAACCTTCTGAGAAGATATAAAGAGAATGATCTGCAGAAAAGCAGCTCTAGTATGTCAAATTCTGCTTGTAGCACACTGCTTGAGGGTTCCAGCTGCAGTGATCTAAATGAAGACAGTCTTTGTTTGGAGGAAGACTCTCATGTGAAGTTCTCAGTTTGGGTCTCCTTCTGTGAGATTTACAATGAAAACATACATGATCTGCTTGACTTTGCCTCGAGTAGTTCTCAGAGAAGGAGCGTACTGCGGCTTTGCCAAGATGTCAAAGGCAACACGTTTGTCAAAGATCTGACATGGATTCAGGTTAACAGTGCAGATGAAGCCTACAGAGTTTTGAAGATTGGGAGGAAAAATCAGAGCTTTTCTTCTACAAAGCTCAACAGTGTTTCCAGCAGAAGTCATAGTATTTTCTCCATCCGAATTCTGCGAATCGAAGATATGTGCGTTCCTCGAGTCCAAACAATAAGCGAGTTGTCTTTGTGTGATCTGGCGGGATCAGAGCGCTGCGCCAAGACCCAGAACCGAGGAGAGCGCTTAAAAGAAGCAGGAAATATCAACACATCGCTTTTAACTCTGGGAAAATGCATAAATGCATTGAGACTGAATCAAACACAGTCCAAGTTCCAACAGCATATTCCATTTAGAGAGAGCAAGCTGACTCATTATTTGCAAGGCTTTTTCAGTGGCCGTGGGAAAGCGTGCATGATTGTCAACATTAACCAGTGTGCTTCAATGTTCGATGAAACTCTGAATGTCCTCAAATTCTCAGCAGTGGCTCAGAAGGTTGTAGTCGTGAACCCAAAACCCGTCTTTAGTGCTGTGCCCAGAAAATCAGCCAGAGACGTCTCAATAATGATCAACAATGTGGACAAGAAAGAGTGGACCAGGAGAAGCACTCTGATTGGGTGGGAGTCCAGTTTGGAGGATGTGCAGgaagatgaggatgatgaagacATGGAAGAGGGTGAGGAGGAcgaagaggaagaggagcaaGAAGCAAGTGATGATGAGAGTGTCATGGAGAACACTGTTTTAGAAGCTGAAGATGATCAAGAGTTAAATGAGCTTCAGCAGAAGATTTGTGAGCTTAAAGAAAAGCTCTCAAAGGCGGATTCTGAAAAACTGGTCATGGAATCTCGTATCAGGGAAGAGGTTACTGCTGAGTTCATGGAGCTGTTTTCCAACATGGAAAAGGACTACAAtgaACGTCttcagagagagaaggaaattGCTGAAGAAAGAGCAGAGAGGAGGCTGGAGATACTGAAGAATCTAGTCAACAAAAATGCCAGCGAGTTGGCAGACACAAGCATCGCTGGAGACGCAACAGAGGAGACTAAGAATGAGGGTTTGGATGGGATGATTGAATCTATGCAGAGTGACCTGGCTAAGATAAGGAAAGATGCGGTAGCTGCACAGACGTGTCTGGAGAAGGGGGCTCACTCCCCTGGAGCAGTCAGCAAGCTGAGGACGCAGCTGGAccaaacggcaaaagagcttcTCAAAAGCAAGCAGCTCCTCGAAGTGAAAACCATGGAAATTGAAGCGGTTCGTGTGCAGTTCCGAAATTCCAGCGACCAGCTACTGGAGGCTAACAAGAATTACGAAAGTCAGAAAATAAGGTGTGCAGAGCTCATAACGATCTGCCAAGAGAAGGATGATGATATCTCCAAGCTGCAGACCACTTTGGATCAAAATATTGAAACAGCTAATGAAGATaGGGCGTTCATTGAGACCATTAAAGAGGAAATATTACACTATAGAAACAACTGCAAGTGTATACTCAGCAGTGGCAATCAGGACGTGAAAGACCAAGAAATTCAGCAGCTTGAGAAAGCCTTACAAGAAAAGGACCTCTGCTTGGATGAGCTTAAACAGAAACAGCATTCACTCGAGCAGAATTTGAAGGATCTCACTGATGATCTGGCAAAGCAGACCTGTGCCCATGAAGCTGCCGTCTCGCTGCTCGAGGctgagaaagcagcagcagtgaaACTCGCAAATGAGAACCGAGATCTCGCCAGCAAACTCTGTGTGCTCCAGCAGGCGGCCAGCGACCTGAGCTCCGAGCTCAGAGCCAAACAGGCAGAGTTAAGCAGTCAAGCCAGTGTAGCAGCCAAGCTTTCTGAGGAGCTGCAAACAGCCAGAGCTCTTATCAGAGAACGTGAAGAAGAGTGCAGTGATCTGTTCGATACAGTCGAATCCTTGAAGTTGGAGGCCGAGAACTTGCGCCAGGAACTTAGCAACCAGGGACGCAAGAGCGGCTGCGAGTTCCAGGAAACTATCGAGGCTCTCCGCAAAGAGTGTGAGCTGGTGATGTCCAACACTCAGGAGAAGAGCAAGAGGATCAAGACACTGGAGCAAGAGCTCACACAGACCAAAGAGGAAATGTGTCACATGCAGAACCAGTGCACTCAGCTTAAACAAGAGCAAGACGCCCAAAAAGAGGAGAACCAGAACATTCTGGGCCACTACGAAGCTGAGAAGCTGGCAGTGGAGCAAATGAAGATAAGGCAGTCTGAGCTCCAGGCAGAGCTCGATGATGTAAAGCAACAGTTGGCGCAGCAGGAACAGCATGAGCAGGCCTACGCACGCAGCTCTTTGAGAGTCATGGAGCTGGAGACGGAGCTTTCTGAGAGAGAGGGCCACTGTGCCGCTCTGCAGGAGAGGCTGCTGCACACACAAGATGAGTTGGGCAAAGCAAAGAATGTTCTGAAGAAAGAGCGCAGCAGATCCTCCTCAGAAGAACAAGAGAAAACTAATGCAGAAAGCTCTAAAGCAAGGGATGAGGCAGaaaggagaagaagagagatggaggagcagCTTGTGCATAAGGATGCGGAATTGGAGGCCAAAACCCAGGAGCTTTTAAAGTCTAAAGAACAGGTGAATGATGGACTAGATCAGATTAAGAGCTTAACTCTTGACCTGCAGCACAAGGAGAAGCATATCTCTGATCTGCATATCCAGCATTCTGAGGGTGGAGCAGAAGCTGAACGTCTGCGGAACGAGATTACATCCCTCACTGAAGAGATCAGAAAGTTGCAGCAACAGCTGGGTGATTTAACGGAGGAGAGGGATCAAGCTTTGAGAAATCTGGCCAATAAGAAGCAAGATATTGAGGAGCTTAAGACTGAGCAAGCCATCACTGCCAGCACCCATGAAAATCTCCAGCAGTACCAGGAGACCTGTCAAGCACTTCTGGCCAAGGAGAAGCTGATTGCAGAAATGCGCCTCACGTTATCTGACAAAGAGCGAATGCAAACGGAGCAGGAGCAAGTTCTGGAGGCAAGACTGAACGAGATTGAATCCCTAAGTGAAGAACTCATGATGCTTAAGGAGAAGTGCCAGAAGGGGGGAGAAACTGACTCTACCTCTGGAAATCAACGCCAGGAGGAACAGAAAGGAGAAGGAACTGCAAGACGTCTGACAACAGATGAAGAGGAGTTGGAGAGGGGCTTAGGTGGAGAGCTTAAGCCAAACGATGCCCCCCAAAGGCCAGAAGAAAAAGCGAACCATGTTATGGACCAATCCCAGGATAAGATTACCTGCAAAGGGCAACTTGAAGAGACAGCAGCGCAGGACTCCTCAGTGCTCTCCactgatagtgagagagaggacaAACGCTTCCCCAAACCACAGCTGGAGATCAGCTTCACCCCGCTCAAGCCTGACCGCGTCAACGTCCGCAGGCCAGGAGCCGAGGAGTCGGTCACGGTCAAAATCAGACGCACTGCTAGGAAGAGGAAGAGTGCTGAGATGGAGAAATCTGTGGATTCTGAGAACAGGAAGAACCTGCGGCTAAGAGGAAACTCCAGGGTCAATATTCAGTCTGTGGAGTCTCCCACAGTGTTCAGTAAAAAGGCCAATCGATTAAAGCAACAGGATTCTCCTGCTAGCCTGAAAGGAAGAAAGGATGGAACTTTGCAGAAGATCGGTGACTTCATCCAGAGCTCACCAACCCTGCTTGGCAGCAAAGCCAAGAAAATCATGGCAATGGTTGCTGTGAAATCCCCAGAGTCACAGATTGCAGAAACCAACAACAACAAGCCCAAAAGATCCAAACGGAAGCTCTTCAAGACCCAGATTTCCTCTCCTTTTGACATACCTTCTCATCCGATCATTGGAATTGATCAAGAAGACAAAGAAAGTGATCATCTCATCATCAAGAGAAAACTGAGAACAAGAACAGCAAAGAAATGATGCCCATGAGGACATTTTCACTTGGATTTAATTCTCATTTACATTCCAGAACCTTCTGTATCTGAGCTGTGTGCACTGGAATCTGTTGTCTGTTGAGTGATGTAAATATTTGCTTTATAGCTGGTAGAATTTATATACTGCACTTGTACATAcagctgttttcttttattgacttgctctgcatgttttcctttttagtAAGAAAAAATATGATGGGAAAAATATGGAGAGATGAATAAACCTCCCAAAGAGAACTGGAGCGCTGAGATCA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10402 KIF20; kinesin family member 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44739 lncRNA upstream 130827 226997 ~ 231863 (-) True G33270
TU44742 lncRNA upstream 143987 240157 ~ 270391 (-) True G33272
TU44747 lncRNA upstream 178880 275050 ~ 275410 (-) False G33277
TU44749 lncRNA upstream 178880 275050 ~ 276680 (-) False G33277
TU44750 lncRNA upstream 178880 275050 ~ 276680 (-) True G33277
XM_007251147.3 mRNA downstream 34656 21446 ~ 37478 (-) True pank1
XM_022668840.1 mRNA downstream 52314 918 ~ 19820 (-) True slc16a12
XM_007251310.3 mRNA upstream 5070 101240 ~ 109740 (-) True LOC103039609
XM_022668845.1 mRNA upstream 191820 287990 ~ 299000 (-) False ppp1r3c
XM_007251142.3 mRNA upstream 191820 287990 ~ 292577 (-) True ppp1r3c
XM_022668849.1 mRNA upstream 210186 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA upstream 210186 306356 ~ 337153 (-) False LOC103038678
TU44781 other upstream 293299 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 293299 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 293299 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 1029295 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 1030225 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile