RNA id: XM_022668848.1


Basic Information

Item Value
RNA id XM_022668848.1
length 3001
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC103038678
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 306356 ~ 337153 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCATCAGCAGTAGAATAGGCATCCacgacacacacatacactctcacacacagaatCAGGACCAGCGTGGCAGGCATCGCTATACAGGGAGCTTCCATCAGAGGAGGAAACAccccactctcacacacacacacacacaggcagcacAAGGGTTTCAGATGAGTCATTTCTGTGAGCGAGgctaaaagaagaaagagagacctGCTGTCCGATTTCCTGCCCATCTTGTGCTCTAATGAGAGAAGCCATGCCTGTCCTATCAGCCAGCACAGGCCTACACGAGATGCTAGCCCTGCTGACATCTCAGCTACACCCAGACGCCAACCACAAAGAGGATCTGGTCTTCCTTCGAGAGGTCTTCAGTGAGAGGAGCCTCAGTTATCTAATGAGAATTCATGAGCGCCTCAGGCAGTACGAGCACCAGAGCCCAACCCCAGTTCTCCACAGCGCCGCCTGCTTGGCAGAAGATGTGGCTGAAGAGCTGCAAACTGGACTACTGGAAGGAGATGAGAAAGAGTTGCTTATGCTTCTGACCACTCCACATGTAaagGCTGTGCTAACAGTCCATGACACGGTGGCACAGAAGAACTTTGACCCAGTGTTACCCCCGCTGCCAGACGACCTGGAAGACGAGCTGGAGGAGGAGTCAGTCAAGATTGTCCGTCTGGTGAAGAACAAGGAGCCACTGGGGGCAACAATACGCAGGGATGAGGTAACCGGGGCAGTGGTGGTTGCCAGGATTATGAGGGGTGGTGCTGCCGACCGCAGTGGTCTGGTGCACGTGGGGGACGAGCTCAGGGAAGTCAACGGAAATCTCATCATTCACAAGCGACCCGATGAGATCAGCCAGATTTTGTCTCAGTCTCAGGGCTCCATCACTCTGAAGATAATCCCCGCCATTAAGGAGGAGGACAAGCTCAAGGAGAATACGGTCTATTTAAGGGCTCTATTTGACTACACCCCTTTTGAGGACAAGGCCACACCCTGTCAGGAGGCAGGACTTCCCTTCCAGAAAGGTGACATCCTGCAGGTAGTCAGTCAGGATGACGCCACATGGTGGCAGGCTAAACGCGTGGGGGACAGTAACCTGAGGGCCGGACTTATACCCTCCAGACATTTCCAGGAGAGGCGGCTGGCACACAGGATGAAAATGGGCACCTATCAGAGTCCTAAATCTCCAAGATCACCACCCTATGATCAAGCCTGTGATAAAGAGGACTGTGACTGTGAGGGCAGTGGCAGTGGACAGCATGTAGCTGGTCTCAGGAGGAGTTTTCGGATGAGCCGTAAAGACAGGCAGAGCTCACCTGGAGAGTCTCGCTCTGCAGAGCACGGAGAACCTGAGTTTCTCACCTACAAGGAGGTGACACGCTATCAGCAGAAACCTTCAGAGAAACCCAGACTGGTGGTGCTAATCGGGTCTCTGGGGGCTCGGATCAATGAACTGAAGCAAAAGGTGATTGCAGAAAGTCCTCATCGCTATGGAGTAGCTGTTCCACACACCACCCGGCCCAGGAAGAGCCATGAAAAAGAGGGAGTGGAATATCATTTCATCTCCAAGCAAGCGTTCGAAGCAGACATTCAGAGCAACAAGTTCATTGAGTATGGGGAATATAAAGAGAACCAGTATGGGACCAGTCTGGAGTCTATTCGGAGTGTATTAAGCAGAAACAAAATGTGTCTGGTAGATGTACAGCCTGAGGCTCTGAAGGTCTTGCGTACAGCAGAGTTTAAGCCGTATGTTATATTTGTTAAGCCGTATTTGCCTGAGGGTCGCCGGCATCGCAGCAGGGCTGCATCGCCAGAAGGAGGTGATAATGGCCATTTAACGGATGAAGACCTGGCAGAGATGCGTCACTCAGCAGAGCAGATGGAGCAGCAGTACAGCCACCTGGTGGACTGGATCCTGGTGAAGGAGGACTCTGCCAGTGCCTGTGTGGAGCTCAGGCACATTCTGGAGCGACTGGAGAGGGAACCACAGTGGGTGCCGGTCAGCTGGGTCCGGCCCTGACTCTCTGCTCCATTCAGACCATCCTCATAAATCCATAAACTGCTGAATTTCTGAGTTCACCAAAAGAAACCCCAAGAAACCCAGGAATGTTCCATGGGTTTATGAGATGAACCTGGCAAACAGTGCACCAATGGCTATTCTACTGTATCAGTGACACTTTCATTTCTGTATCATCACGCTCATAAATGATTGTAACATTACGCCTACCTCTAGTGAATAGACAAGCCCTATCAGCATCAGCTATCTTCATGTAATGATCAGTGCGTGATGTCATTGGCCCACCCCAGCAAATATATGTCTATGTATGTGTTCATGTGAGAAATTAATGTGTTGCTGATGACttgacacaaaacacaaaaacacaaacacaaaaattaggTGTTGACAAAGGCTTTCTGAATTGAACTACACTGCACAAATTACATCTTGGCAAGTGAATCTATCTTAggtcatgcaaaaaaacatgtatctccaaaacagaaactttaccttcttaactttcaatagaatCAGTCTAACaagattttatttctgttcatcCATTTATCAAAACTTtgcataaaatgtaaagaacaactggcAGTTTTAGACTAGTGACTCATTTACATAATCACAGCCTTTTAACAAGCAGAATATTCTCCACAAGGGGGAGCTATCAGTACACCAAGCTATCAGTGCTTTTGGTGCTTCACATCACTGACAATGtgtctttgtttatttaatttaatagttaTATCCAGGAACCTGTCACGTTCTTAAGTAGATATTATTATATgacattatattttaattatgaaatgtataaatacgtttcaatatatttatatatattttttaattaagaaaattatgTATCAAtggaattcattcatttttttaaatcaggtttTCTTCACAAGATCTGTTTCTGAaatagtttctctgattttgctatttataggtacatgtttgagtaaaatgaacattgttgttttattctataaactaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44749 lncRNA downstream 29676 275050 ~ 276680 (-) False G33277
TU44750 lncRNA downstream 29676 275050 ~ 276680 (-) True G33277
TU44747 lncRNA downstream 30946 275050 ~ 275410 (-) False G33277
TU44742 lncRNA downstream 35965 240157 ~ 270391 (-) True G33272
TU44739 lncRNA downstream 74493 226997 ~ 231863 (-) True G33270
TU44761 lncRNA upstream 17047 354200 ~ 354841 (-) True G33286
TU44772 lncRNA upstream 32574 369727 ~ 372765 (-) False G33289
TU44774 lncRNA upstream 32574 369727 ~ 372765 (-) True G33289
TU44776 lncRNA upstream 33220 370373 ~ 373316 (-) False G33290
TU44777 lncRNA upstream 33220 370373 ~ 374146 (-) True G33290
XM_022668845.1 mRNA downstream 7356 287990 ~ 299000 (-) False ppp1r3c
XM_007251142.3 mRNA downstream 13779 287990 ~ 292577 (-) True ppp1r3c
XM_007251310.3 mRNA downstream 196616 101240 ~ 109740 (-) True LOC103039609
XM_022668843.1 mRNA downstream 210186 72134 ~ 96170 (-) False LOC103039921
XM_022668842.1 mRNA downstream 210186 72134 ~ 96170 (-) True LOC103039921
XM_022668851.1 mRNA upstream 18497 355650 ~ 365154 (-) False LOC103038367
XM_007251307.3 mRNA upstream 18497 355650 ~ 365154 (-) True LOC103038367
XM_022669426.1 mRNA upstream 52281 389434 ~ 400990 (-) False LOC111192416
XM_022668853.1 mRNA upstream 72261 409414 ~ 418452 (-) True LOC111192339
XM_007234065.2 mRNA upstream 103401 440554 ~ 448541 (-) False znf281
TU44781 other upstream 52316 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 52316 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 52316 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 788312 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 789242 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile