RNA id: XM_022668853.1


Basic Information

Item Value
RNA id XM_022668853.1
length 2278
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC111192339
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 409414 ~ 418452 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCTCTACTGACACAACTAATGCGCCTACTGGCTCAACTGATGACCCTACTGGCACTACAGAAGCCCCTACTACATCAACCGAAGACACAGCAATGACTTCAACCACTAGAAAACCAGGTTTCTGTACATTGAAGCCCTGCCCGCCAGAAAGCACCTGTGAGGAACGATTTGAAGGCCGCATGTGTTTGTGTCGCTCAGGATTAGTCTACAGTGAAGAGCTAAATACCTGTTCTCTTGCAAAGACTTTCCCCAgtgatttaaaatttaatatgGATTTTAAAGAGGATATGTTAAACCGCTCATCTAAAGAATTCAGAGAAACAGCCGATCTAATAATTAAAGGGaTCAATGAAAGTTTCAGTGAAAATTTCCAGTCAGGGTATATTGGATCTGTAGTTTTAAGTCTAAGGAGGGGCAGTGTGATCGCAGACGTGATGAACttttttgaagttttggcaGATGTTTCTGAAGACACAATAACAGAGGCATTGAAAAACGTGACTGTTAACAACATCCCAGCCAGTGTTGATTTAAAGAGTTTATGCGTTACTGGATACTGTGAGAACAGGACCACAACTTGCGACAAAAGAGATGGTCTTTACAGTTGCACTTGCCTCGAAGGACATATAAAATCAATATCAACAAATCGGTCATGCTTTgCCTGTCTCAGTGGTGAGAAAGCAGTGGACTCAGACTACTGTGAAGCATGTCCTTTTGGTTATACTGGTTTCAACTGTAATGAATCATATCTCTTGGCTGTGGTCATTGTCTCAACTGTTCTGGGCACGGTGTTACTTGTTGCCATTGTGGCTTTCATAGTTACGCAGAGTTTAAGATGGTCAGAGAAAGGAGGCTCATCGAAAGATGATAAGGATATGTTCAGTGATATGGAGTTCCATAAACCTCCCAGAATCCCACGGGCCAAATCTAGTCCTAGCTGGAGAGCAGCCAATCTGGAACCATCAAACAGTGGAAGCATGCATTCTCTGGTGACCAAAGATGCGCCAGTGACTATAGAGATGGGGAGATACAATTACTCCTATAGTGACGACTTGGGACGATATAGGACTCGAACTCCATCCAGGAATGGAAATGCCAGTGGGAATGGATATAGCAATGGAAATGCTTATGAGGATCGGAATGCTTATAGGAATGGGAATGCCTATGGGAATGGGAGTGCTTATGGGAGTGGGAATGCTTACGGGAGTGGAAATGCCTATGGGAATGGAAGTGCATATGGGAGTGGGAGAGCATATGGGAATGGGAATGCTTATGGAAATGGAAATGCTTATGGGAATGGGAAGACCTATGGGAGTGAAAATGCTTATGGAAATATCTATGGGGCCAGGGCAGTGAGTAACAGCTCCAGAGGAACAAGCAACCCAAACTATGATCCAGATGATGTCAGAATCCGCAGATATTAATgctatacaaaataaacacatgTAGGCCcaatgttaacatgttaaacATAACTGAAGGCCTTTACAGTCACTTGGATGTTCCCATGGAAAATTCTAACCAGAGGccactggtcacaatcatttccACTCAccacactgtccactgtgggagcTAATGCCTGGCTCCCAGTACATATGTGACACTGTAAATCAAGAGATGTTAAAAGACTGCATAACTctggaaatggaatgtcccattcaCACTTTGCCATGATCATCTTACTCAAAAAGGTAGCACCTCGCAGCTTATAGAGGAGTTTGCATTCCTAAGAAGTGCCCTGATATAAAGTATTAGCTTTAAATTCCAGTATTCCAATTCCAAAAAAACACCAGTGCTTGCAGAAACAGATTAACAATAACTAGAAGTACACTTGGTCTTAAAGGTATTTGCACATATGTAGAAcaaaaaagtgtgtgtatgcTTGTGCATTTCAGCATATGTATGATGTCAAGTATTGCAAGATCAATGTATGTGATTGTATGTCAAAAATGTGAACTTGataaaatgaatgttttgtTCAGGGATTTCAGTAGCTCTCATTTTTTATATGcggtttcttaaaaaaaaatcacaactgCTTAGATTAAGATGAACACTGTTTCTTTCcttatttatactatatatgtatttttttaagatttaatatTGCCTAGACTGGATCTTAGGTATAAAAACAAGACTTCAGTGGACTCGTCAATGACACCACAGCGGAGCTTGACTGTAACATTATGTAAACTttgtaaaatgtcttaaaaagctTGAATTTTGTGGAAGAGATGAGCTTTGAATAAATTATGAAACTAAAGAAATA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44783 lncRNA downstream 8102 396107 ~ 401312 (-) False LOC111192416
TU44794 lncRNA downstream 8102 397273 ~ 401312 (-) False LOC111192416
TU44777 lncRNA downstream 35268 370373 ~ 374146 (-) True G33290
TU44776 lncRNA downstream 36098 370373 ~ 373316 (-) False G33290
TU44772 lncRNA downstream 36649 369727 ~ 372765 (-) False G33289
TU44796 lncRNA upstream 61 418513 ~ 469639 (-) False G33296
TU44800 lncRNA upstream 61 418513 ~ 423388 (-) True G33296
TU44808 lncRNA upstream 61 418513 ~ 419626 (-) False G33296
TU44938 lncRNA upstream 187297 605749 ~ 609512 (-) False G33389
TU44943 lncRNA upstream 187297 605749 ~ 610141 (-) False G33389
XM_022669426.1 mRNA downstream 8424 389434 ~ 400990 (-) False LOC111192416
XM_022668851.1 mRNA downstream 44260 355650 ~ 365154 (-) False LOC103038367
XM_007251307.3 mRNA downstream 44260 355650 ~ 365154 (-) True LOC103038367
XM_022668848.1 mRNA downstream 72261 306356 ~ 337153 (-) False LOC103038678
XM_007234065.2 mRNA upstream 22102 440554 ~ 448541 (-) False znf281
XM_022668850.1 mRNA upstream 22102 440554 ~ 448317 (-) True znf281
XM_022668856.1 mRNA upstream 148434 566886 ~ 667790 (-) False LOC103046197
XM_022668854.1 mRNA upstream 148434 566886 ~ 667789 (-) True LOC103046197
XM_022668855.1 mRNA upstream 148434 566886 ~ 643689 (-) False LOC103046197
TU44781 other downstream 8102 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 707013 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 707943 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1392134 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1604289 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1616642 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile