RNA id: XM_022668857.1


Basic Information

Item Value
RNA id XM_022668857.1
length 5992
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC103046197
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 566886 ~ 667790 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCGAGCGTCCATAAGactTCTGCCGAGCGCGGAGGAAGTCAAGACGCCAAAGGctgatGGAAAAACAGATGCCTGCGTCAAGATGAGCGTGTCTGCCAGGATGTCTCACTGTAAAGGGCCGGAGGTGGCTGAAGTCTTGTCCAACTCAAAGACCCTCTCAGAGGACTGCGCACAAGAGGGCCTCGGTAAACATACCAACCAAAACAGAGAGCCAATCAACAGCCTGGACGAGCCGGCCATGGCCAGcagaacatcatcatcatcagatgAAGCTGAGGAGGCAGACAAAGAGAAGAAGAGTAAATTACTAACCCACacagaagagaagaggtccTGGATGAcgagaaaggaggaggaggaatgtgGAGAAAAGGAAACCTCCTCAAAACCAGTAGCCGTAAAGATGGAGGAAGAGCCAAAGTCTCCCACTGTGACTCTCCAAAGACAGGACTCGGGCCAGCGCAGCCTTAGAGGCATTCTGAAAAAGAGCCGCTCCACCAGCCTGGAGGCCGAGCTTTTTGAAGCGACTCCAGACAGAAATGGGACACCTGCCATGGAGACTACCAGTATGAACGAACAGGAGGAGATGCTTGAGGAGACAGGAGAGCAGATGGAGGACCAAGACGAAGACATGGTGGATGAAGGAAGAAGAAAGAGGattgagagagaggagagcagcTCCAGTGACCTTCCACCTTCGCCATCCTCAGATGATGTGGAGAAAACCCCGTCTCTGTGTGCATCggaggagtgtgaggagctGGAGAGCAGCCTGGATGGCAGCATGAGCTCCTCACTTAAAGAGAGGTTTGTTGATCTCACAGCCACTGAAGAGGACTGGAGGAATAAGCTGAAAAAGTCCAAGGCTGGCGACACGGTCCAAACATCTCTGGCTGATCGTTTCAGCCAGCTGCAGGACTCTGAGAATGCCTGGAAGAAGAAGaAGTCCTCTGCCGATGTGGAGACAAAGATGTCCTTGTCTGAACGGATGAAGGTATTACAGGAGAAGGAAGAGCAGTGGAAGGCCAAAGGAAAGGGAGCTGCCAATGACTCCACACAGTTCTCCGTGGCTGGACGCATGGCCAAGAGAGGACTCGTCTCCTCCAACAAAGAAGACTCGCCTGTTATCCTCAGCAAGAAATCAAGCCACAGTACACCAGTCAAGCCTTTAGAAGAGATTTCCACTCGACCTGATGCAGAGGGCGACAAAAGGCTGGACAAGCTGGAGTCCTTTTTAGACAGACTTCAAAATAAAGGATCGACGAGCAGTAAGTCCTCCACCATCGAGGTGACtgaggagaaggagaaggaggtgATGTCCCTGGATGACGAGGAGACGTTTGGACGCTTTTATAAGTGTGTTTCTCCTACAGCCCTGAGCTCCAGCCTGCTGCTGGATGAGGAGGAGGACTTCAGTGCCATCCAGTCTGACACCCCAAAGTTGACCTCATCAGTAGCGGATCATAGACGGGCTGTGAGGCCATCCCGCAACACTAAGGGTTCCAGAAATCCTCTGCGTGCTCTGGCAACGCGAGATGATCTCCGGCAGGCTTACACAGAGCAGAGGCTCAACATAGCCACTGTGGAGGCCAAGAGGATGCAAGTGGAGCGAATGGCCAAGCACTCCAGACTGGCGGATTGTGCCTTGGCTGGCTTGGCCAGTAAAGAGAACTTCAGGAAAGTGAGCCTGCGTAGCATTAAATCCACTGAAGTGGTGACCAACAACAGTGCTGTGCCCTTCCACAAGCTCATGCTCATCCAAATCAAAGgACGTAGGCATGTTCAAGTGCGACTGGTGGAGCCGACAGCCTCCTCTCTGAACAGTGGAGACTGCTTTCTGCTGATCACCCCTAAACACTGCTTCCTCTGGTGTGGAGAATTTGCCAACGTTATTGAGAAAGCCAAGggCTCCGAGATGGCACAGTATGTTCAGGCCAAGAGAGATCTTGGCTGTAAGGCCCCACAGGTCACCGTGCTGGAGGAGGGCATCAACACAGACAACCGCTTCGCCAAGGAGTTCTGGAATCTTCTCGGGGGACAAACTGAATACAGAGCTGCTGGGGAACCAGAAGAAGACGAGCTGTATGAAAGTGCCATAGTGGAGTCTAATGGTGTTTACAGGCTGGTGGAGGATAAGCTTGTGCCTTATGAGGAGGTGTGGGCCTCCATTCCCAGTGTGACCATGCTCAACTCCAAAGAGGCGCTGGTGTTGGATTTTGGCAGCGAGGTGTACGTGTGGACGGGGAAGGATGTGGCGCTGAGTGACAGGAAGGTGGTCATGCAGCTGGGCAAACTGCTCTGGAGTGGAGCCTACGATTACACCACCTGCAGGGTCAACCCCCTCGACCCCTTCTCATCCAATAAGGACATCCCTATGCAGGGTGAGGGCAGACCAGGCTGGGCTCTGTTTGGCAGGCTGTCGGAACACAATGAAACAGCTCTGTTTAGAGAGAAGTTCCTGGACTGGGCTGAACGCAAGCCACTGAAGGAAGAGCAAGTAAACGAGGAGATGAAGAGTCCAGTGCATCAGCCCTGCTCCCCTACCCATGACTCTGAGCTGAAGCCATGTGATGTGAGAGCCCTGCTGGATGGAGGAGAAACCCCCCTGAAGATGAACTTGGGGGGCGTGGATGTGCAGAGAGGTTACGGATTGGTTCGTTCTGAAGATGGACGGCAGGCTGAGTTAGCCACGGTGGCGGTGGATGCCTGGCACATCCGAGAGTTTGACGACTTTGAGATTCCGAGAGAGAGTGTGGGTCAGCTGCACGAGGGCGACACCTACGTCATCCGCTGGAAGTACTCAATCACTAGTGTCGtgggTAAAAGACAAAAGCCGGGTGAGGTGAGTGCATCAGGGCCGGGCAGAGAGCGCATTGCATGCTTCTTCTGGCAAGGTCGTCACTCCAGCGTGAGTGGGCGGGGCACGTCCGCTCTGATGACAGTGGAGCTGGGGAACCATGAAGGAGCTCAGGTTCTGGTCACTCAAGGTAAAGAACCACCCTGCTTCCTGCAGCTCTTCCAGGGAGGACTTGTGATTCACAGTGGCTGCAGAGAGGATGCAGCTACCAACACAGGTGGCTGGCGGCTGTTCTGCGTGCGCGGAGAGGCAGCAGTAGAAGGCTCTCTGTTGGAAGTGGAGTGCTGCAGTGCCAGTCTGCGCTCTCGTGCCTGTCTGATCCtgctgggtgtgtgtgagagacagctgtACCTGTGGCACGGCTGCAAGTCGCACCCTGCAGCGCGAGAGGTGGCCAAGAAGACTGTGGAGCGGCTCACTCAGACCTGTCCCCCTGAGCTGGGTCTGAACAACAACAGCAGTCTAAAGGTACAGGAGATTGAGGAAGGCTCAGAGCCCCAGGCATTTTGGGATGCACTTGGCCAGCAAGACAGGAAAACTTATGACTGCATGCTACAAGATCCAGGCAAATACAACTTCACACCTCGTCTTTATCGCCTGAGTGCCAGTGCTGGAACCTTCAAGGGTGAAGAACAGCTTAGTCCTTGCAGAGTGGCAAATGCAGTCATGGCCATGCCTTTCCTACAGGAGAATCTGTACGCTGCTCCTCAACCAGCGCTGTTTCTGCTGGATAACAGGATGGAGGTGTATCTGTGGCAGGGCCAGCAGCCGGAAGATGCAGAGTGCACAGGCTCAGCTAAGATCCGCTGGGACAACGAGAGGAAGTGTGCCATGGAGACTGCACTGCAATACTGCAAAGCAAAGAACTCCAGACGGCCTCCTCAGGCGTATCTGATCTTGGCGGGAGCTGAGCCCCTCACCTTTACCAATATTTTTCCCTACTGGGAAAAAGACCCCAGCATCAGAGTGCAGgGCATGAGGAATAAGGTGATCTTAGTAGAAGATGCTCTTTCCAAGCTCAGTAAGAACCAGTACTCCATAGAGGAGCTGACCAGCAAGCCGCTGCCCGAGGGGGTGGACCCTCTGCACCTAGAGCTCTACTTATCTGACAAGGACTTCCAGGACCTTCTGCAGATGACACGTGAGGAGTTTTGCACCCTTCCCAACTGGAAACAGCTAAACCTGAAGAAGAGCAAAGGCCTGTTTTAAACAAAGACACaatctttcacatctctgcagcaaactgaaagaaaacaaggatggatggatttctGCCGTGTGTTTATATGGAATCTCGGCTCGTGTATAGCATCAAGTGTacagtttaaaactttttaaaagacaGATCTACCTATTTTCCCTTAACAACGACAATGACCTAGAGGACTCTTCTGAATGCCAATTATTGTAGCTCTTCAGCTCTTTTTACGCTCTTTTAAAAGGACATCCTTTGTATCCTAAATATGCAACAGTACATGAGTTTGGGACATCATGTGACTTGTCAACTAGGATTGACTAATTATGAACAGTAAGCTTGAATTCTGAATGTGTAATATGTTTGCAGGTCTTTTAACCATTTTATCAAACTGTGATGTTTTAAAGGCAACTTTCTAGAACACTAactttatacactttatataaataaaggtgctacaaatggttctttgagcaaTGGAAAAGAAAAGGATGGCTCATGATCCATGCATAAAACAtaatctgtcaaacatggtggaggcagtgcTATGGCATGGGCATGTATTGTCACTTTAAAAGTAGTAGTATGAATTCTGTACAGAGCTACACTATCTGCTCAGATGCAACCAAATTCTGTAATGATGCCTCACTGTACAGACGGACAATGGCCTCAAACACATTgtaaaacatttgtttaaaagTTATTCCTGAAAATGGTTAAAGAACCTTTtctagcacctttatttttaagactgtGGTGTAAATCATGAATGCTCTTCTGTCAGTCATGGTCCATACATGCTACTGCACAATGAATTGCTTTTAAagccatgtgtgtgtatgtacatgtGTGCAGAACAGCACATAGCAGTGCAAACTACAGCCCCAACAAGGGAATCCTCCTGCagttttcaattttatttctatctgACATATCTGTAGCATTTGTaagaaacacatacagtacatttaatgtACTCAAATACAGCCGCCTCCATCTGATAAGTACCTAAGTGCTGGGTATAGTTGATACTATTGATTGTCGTATTATATCGACATGAATTTTCCAATTCATGAAATGCGCCgttaatgaacatcagtcagtgataaatgctgtaaataatgtaatggAAATGCTTTAGAAAATAATATCACTGTTACTGTTAGTTAAACACTTTCTATACAAGGCAATTATACATATATCACTAGATATACAGTGATATTGAATTATAGTCCAACCCTGGTctgaacaatatattgtgctaATATAAACCCCAAATCTGCAAAATGGCAACCaactttttttacagcatttttatgCTTCTTAAGGAAATTTAAACAGGTAAACAACATGAAAGATACACAttgccaaaaagaaaaaaatacaatggagagattttttttttctaaatgtttttataataaattaaaattaacatgACCGATTTACAGTGTGCTAAGTATCTTAAACTCTAAGTAAAAATGGTTCTctacagtaattaaaaaaatagcaatttatttaacatttaatacaaaTTGTTTCCACCATTTTTACAACACAAAATATCATTGGTgcatctaaatgttttttttttaattgttatggTTCCGTTTAACACCACTGTTGTTAAGTTAAAGATGTGATTGTTGTGCTTTAGTGCAATTCTGctaaaataacaatacaaaaacaaaaaaaaataatactattcAAATAATAATGGTAAATATTCCCAATTTGTTACAATTACCAGTATGCTAGAGGTAGAAATCAAACTGAAAACCAGTGGAGTATTCCTACAGTATATCTTACAGTGTTATATGAGTCCCTATACTGTGGCTTTCCAGTATGTACTGCCTATATCATTACACATATCAGTAACTATcatctgtatttgtttttgggttttttttcaacTGAATACATGCAGTTTATGAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44796 lncRNA downstream 97247 418513 ~ 469639 (-) False G33296
TU44800 lncRNA downstream 143498 418513 ~ 423388 (-) True G33296
TU44808 lncRNA downstream 147260 418513 ~ 419626 (-) False G33296
TU44783 lncRNA downstream 165574 396107 ~ 401312 (-) False LOC111192416
TU44794 lncRNA downstream 165574 397273 ~ 401312 (-) False LOC111192416
TU45016 lncRNA upstream 287765 912388 ~ 921646 (-) True G33441
TU45154 lncRNA upstream 528809 1153432 ~ 1156177 (-) True G33539
TU45161 lncRNA upstream 549817 1174440 ~ 1174655 (-) True G33545
XR_002649839.1 lncRNA upstream 1094025 1718648 ~ 1720446 (-) True LOC111192344
XR_002649840.1 lncRNA upstream 1096188 1720811 ~ 1727257 (-) True LOC111192345
XM_007234065.2 mRNA downstream 118345 440554 ~ 448541 (-) False znf281
XM_022668850.1 mRNA downstream 118569 440554 ~ 448317 (-) True znf281
XM_022668853.1 mRNA downstream 148434 409414 ~ 418452 (-) True LOC111192339
XM_022669426.1 mRNA downstream 165896 389434 ~ 400990 (-) False LOC111192416
XM_022668851.1 mRNA downstream 201732 355650 ~ 365154 (-) False LOC103038367
XM_007234067.3 mRNA upstream 48562 673185 ~ 681349 (-) True LOC103045678
XM_007234071.3 mRNA upstream 62468 687091 ~ 713037 (-) False LOC103046699
XM_007234070.2 mRNA upstream 62468 687091 ~ 712939 (-) True LOC103046699
XM_007234072.2 mRNA upstream 62468 687091 ~ 712938 (-) False LOC103046699
XM_022668861.1 mRNA upstream 89648 714271 ~ 735751 (-) False LOC103026030
TU44781 other downstream 165574 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 500842 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 501772 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1185963 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1398118 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1410471 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile