RNA id: XM_022668861.1


Basic Information

Item Value
RNA id XM_022668861.1
length 3594
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC103026030
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 714271 ~ 735751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGCCACTGCCATACACCCCCCTAACTACTAACTGCACCTCTCAGATCACACAGTGAATATATTACCACTACTGCTAGAAGTTAGATGGAAAAGAGCACGCCGTGGGCGGGGCTGTATTAGCCTGAACTCGGCTCTGATTGGAGAATTTCAAAGCGCGAAGTCTCCCTCTGCATTCGAAGGCGTTTACCTGGCTAACTAAATTAGTTAGCTGAAACGCCACCACTGTGACGTGAAATGTGTGCGGTAAATACTCACATTATTAACCTTTACTGTCTGtatatcatatatttatgtattatgtattactGTCTGACACAGTACCCACTAATATCTCAgtgaaatgttttgtttatttttactgttgagGTCAGTGTGAGTGACTGATGACGAATTTAACACTGGGCGGAAGACCGGCTCAGGAGGAGCCGGACTGAGGAGAAGCTGCTTCAGGGGTTCAGTTCTACTTTAAAAGATgtggatgatgatgaagatgtgCAGGCAATGATGCAGGGCTCTACAATGCTGAAGATTGGTTCTCCAAACTGGAAGTGGAGGCGCTTTCTGAAGCTGGAGGATGATAAAATCACTATATGTCATCATTCCAAAAAGAGCTTAAAGAAGTCCAAAACCTtcAAGGTGGAGGATGTGGAATCTGTGCAAGAGGGTTGTCACTCAGAGAGGCAAAGATCATACGAGGGTTTTCTGCCAGAGGAATACTGTCTGACTGTTGTgtttaagaaaaacctgaagAGTTTGGACTTGCAGTGCAAAAGCAGAGAGGAGGCACAGCACTGGGCCCGTGGCATCCGCACCTTACAGCAAAGAATGAACAACATGAGCCATGCCCAGAAACTCCACTGTTGGATCCACGAAAACCTAAAGAAAGCAGATTTGAACAATGATGGGGTGTTGACATTTGAGGAAATGAAAACTCTCCTCCAGATGGTCAATATAGATCTCGATGAGCAGCACGCCTCACAACTGTTCAAGGAGTGTGATCAATCAGGAGACATGCTTCTTGAGAATGAGGAGATTGAGACGTTTTGTTGCAGGCTGTTGCAGCGCCCTGAGCTGGAGAATGTGTTCGATCAGTACTCCTCCAAAAGCcatgtgctgtccactgtgaagCTAAGGAAGTTTCTGAAGGAGCAGGGAGAGGACAGTACACTTGTGCATGCAGAGAACCTCATCCTTACATATGAGCTTGATGAGTCGGCTAAGCAGGCCCAGAAGATGACGCTCGGGGGCTTCACCATGTACATGCTGTCGAAGAATAATGACATATTTGATCCAGAGCATGACAAAATCTATCAGGACATGAGCCGACCTCTCAGCCACTACTTCATCTCCTCTTCACACAACACCTACCTTACTAAAGACCAGCTTGTGGGCGAGAGCAGCACAGAACCATACATCTGGGCATTAACCCAAGGCTGTCGCTGTGTTGAGCTGGATTGCTGGGATGGAGATAAGGAGCCGGTGATTTTCCATGGTCACACCCTCACCACTAAAGTGCCTTTCAAAGAGGTAGTGAAGACAATCGCTGACTATGCCTTTAAGACCTCTCCATTTCCTCTCATTCTGTCCTTGGAGAACCACTGTTCAGTGGAGCAGCAGACCATCATGGCCCAGCAGCTGCGCTCCATCCTGGGAGACAAACTGCTCACAGAGCCCCTCAGCGATCAGCCCTGCGAAAGCCTTCCTTCACCAGAGGAGCTGAAGGAGAAGATTCTGGTGAAGGTGAAGAAGGAACAAGTGGACCAGCCTAAGGATAAGTCTAAAGCAAAGGGCAAAACCAATGCTTTTGTCCTGgtGTGTACCATGAGTCAAGAGCTTTCTGATCTGGTGGTGTACACTCGCAGTGTTCCCTTCAAGGGCTTCAGTGAAGCAGCCAAGAAACCCCCAAATGAGATGTCATCATTTACTGAGAAGGTGgccctcaaacacattaaaacttcAGGGAAACTGTTTGTACAGCATAACAGCCAGCATTTGAGCAGAATTTACCCATCTGGTTTTCGTCTGCAGTCATCCAACTACGACCCTCAGGACATGTGGAACGTCGGCTGCCAGCTGGTGGCTCTGAACTTCCAGACTGACGGGGAGCAGATGGATCTAAACAGGGGACGTTTCTTACCGAACGGTCGCTGTGGATATGTCCTGAAGCCCAGCTTCCTGTGCCAAACTGACACTGAGTTTAACCCGGATAACAAGGGAGGAGGACCAGGACATAACCACACTCTCCTCACCATTCAGATCATCTCAGCCCAGCAGCTGCCTAAACCAGAGAATGGAAAACTCAAGTCCATCGTGGACCCTATGGTTTGGATAGAGATCCATGGGGTTCCCATAGACAACAGCAAGGAAAAGACAAAACGCATTGACAACAACGGCTTCAACCCTACATGGAACGAAACTTTCACATTTAAATTGCACGTGCCTGAGCTGGTCCTGGTGCGGTTCGTGGTGGAGGACCATGACCATCATTCCAAAAATGACTTCTTGGGACAATTCACATTGCCTTTCACCAGCATGCAAGCAgGTTACAGACATGTGCGGCTACTGGGGGCCGACGGTTCCAGCCTATCTCCTGCCAGCCTCTTTGTTCATGTGAAGGTTACATCTAATTACGGTAGCCCTAAGCATGCTGCATCACCCAAAGCCTAGAAGAAGTGCAGTCATGGTGCTTCTGGCTTACAGTGGCTGTTACTGATTTACTGTGTTGTTTATAgctgtctctttgctgtgaagatgccGCAGACACTGCCTTAGGAAGAATTATTTATAACAAAGACTAAGACAATATCTCTACGGCGGTCCTAGATTTAGGCGGTCCTAAATCTTAGTCTTGGAGAGAGATTCAATTGAATTCAATgttcctgctctctctcctcacagGAATGATGGGCCTGCTTATATAAGGTGTAATGGTATACATTCGTAAACACTAAATCATGCTCTAGACACAGAGTTATCCATAGGAGGAGTCTTTCTAGAAGAATGGTTACATACATTAGTGAAGAAAAATACTGAGGAAAAATATAAGCTGAAAAGTTACGTTAACTGTAGCTTCTGTCATAAACTGTGTAACGTGCAGGAGATTTGTTCATTCTTTAAATGATCACttagttagttaattactttgtgagagagaatgtaaacaaatcaaaaaaaaaaatcaggtacAAACATATTTCAGGGGTGTTGAAtgcattaaatacataaaatctaagtcttaaatatttatactgCCAAATATAATTTTGCATAACTAACTGTGATCtcatgttttgtcattttttttctgaacttttgcactatattattgtatattattgttattagtaATTATGCTTTGGTAACTAAGCTCAGATGGTGAAGTACAAACACACTCAAAGTCATAACTATTTTCATAACTCTAAAGTCATTGCCAGTCTTTGTTGTAGACATTACccttttaagtattttttttatttcagttactTCTTTTGCTGCATTCTGTTTATAATTAATCtatttataatacaatattctAAACAGTCTATAGCATTACTTTTTGTAACTTTGGCAGCAATAAAATGATAGATTTTAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44937 lncRNA downstream 102203 608407 ~ 612068 (-) False G33389
TU44934 lncRNA downstream 103608 608407 ~ 610663 (-) False G33389
TU44943 lncRNA downstream 104130 605749 ~ 610141 (-) False G33389
TU44944 lncRNA downstream 104130 605749 ~ 610141 (-) True G33389
TU44939 lncRNA downstream 104130 609053 ~ 610141 (-) False G33389
TU45016 lncRNA upstream 176637 912388 ~ 921646 (-) True G33441
TU45154 lncRNA upstream 417681 1153432 ~ 1156177 (-) True G33539
TU45161 lncRNA upstream 438689 1174440 ~ 1174655 (-) True G33545
XR_002649839.1 lncRNA upstream 982897 1718648 ~ 1720446 (-) True LOC111192344
XR_002649840.1 lncRNA upstream 985060 1720811 ~ 1727257 (-) True LOC111192345
XM_007234071.3 mRNA downstream 1234 687091 ~ 713037 (-) False LOC103046699
XM_007234070.2 mRNA downstream 1332 687091 ~ 712939 (-) True LOC103046699
XM_007234072.2 mRNA downstream 1333 687091 ~ 712938 (-) False LOC103046699
XM_007234067.3 mRNA downstream 32922 673185 ~ 681349 (-) True LOC103045678
XM_022668856.1 mRNA downstream 46481 566886 ~ 667790 (-) False LOC103046197
XM_007234077.3 mRNA upstream 25170 760921 ~ 831108 (-) True LOC103021879
XM_007234081.2 mRNA upstream 117204 852955 ~ 880303 (-) True LOC103022903
XM_007234083.3 mRNA upstream 147236 882987 ~ 942741 (-) False LOC103023211
XM_007234084.3 mRNA upstream 147236 882987 ~ 942741 (-) False LOC103023211
XM_007234082.3 mRNA upstream 147236 882987 ~ 942741 (-) True LOC103023211
TU44781 other downstream 312959 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 389714 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 390644 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1074835 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1286990 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1299343 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile