RNA id: XM_022668883.1


Basic Information

Item Value
RNA id XM_022668883.1
length 2985
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC103040308
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1825489 ~ 1837284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTTCAGCCCTCAGCCCGTGATCCGCAAAGAAGCGGGAGAGGCGCTGGGAGGAGCGGTGTGGGGCTGCGGGGTCTGTTTTGGGCTGAAACACGTTGTTTATGCAATGTTTGGTATGTTTTTATGTCGTGTTCTCTGCTAGGATCCATACTTTATATCCCAATGGAGGAGAGAGTCTGAGAGGACCTGCTGTGTTGTGAGCTGTACTCTTCACAGAATAGTTCTTCTTCATCTAACTACCAGTTATACCAGTTAAGGGGGGAAAATGCCCAACTGCTGCGCAGCATATGGCTGTGGAAAGACCCATAAAGACAATGTCACGATGTTCAGGTTTCCAAAGGACCCTGTGAGCTTCCGCAAATGGGAAAAGCAGGTACAGAAGACACGGAGCAAATGGTATGCGAAGGGCTTCTCTTTCCTGTGCTCTGAACATTTTAGCAAGGACTGTTTTGAGCCGAGATCCAACGCAGTGGCCAAAGCCATGGGGTTCAGGGGGCTGAAGCTAAATGAGGGAGCTGTTCCTACAATTTTCATCCGCCGGCCTTGCAGTAACTGTCACGGCAAGGGCTGTGTGTCCTGCAGtccaaagaaaaagaaacacgaCATGGGAATGGAGCCCCTGGACTCTGAAGCAGAAGAGTACACAGGGGCTCCTGTGGATCTAGACTCTGATGCTTTGGAGGAAGAGAATGGAGAAGAGGAGAATGAACACATAGAGCAGGACCATTCTGATGGAGTGGTTACTAGTCCCACATTTCGTTCACGTGGTTCTTTTGTGCGCAATGATGTAACAGtTGTCTGTGAGAAGTGTGGTGTTTCTGGCACCAGAGGAAGCTTCTACTCCAGGAGTAAACGCTTCTGCAGCGCATCCTGCTCACGCTCCTTTTCCTCCAGCTCTAAGAAATCTTCCATACTGGCACAGCTAcagGGAAAGCCACCTCTGCGGAAGGGTCATGCATCACAAGCAAGGAGTTCTGCTCACACACAAGGAACAGGAACAGGACATCAGGGCAGCACAGCTTCTGCACATGATGTATCCTCTGGTTTTGACTGGGGTGGTTATCTAAAGAAACATGGCTACCTCGCTGCTCCAGTCTCCTGCTTCAGACATGTGCCGCTGTGCGCTCAGTGGGAGGACATTGAGGTGGGGTTGCAAGTGGAGGTGCTGAATATTCACACTACTGTGATGTCGAAGGTTTACTGGATAGCCACCATCATTCGGCTCGCAGGCTACAAAGCCCTGCTACGCTATGAGGGATTTGGGGATGACGCTAGTTATGATTTTTGGTGTAACCTTGGCAGCGCTGAAGTCCATCCTGTTGGCTGGTGCGCAGTAAACAGCAAGCTACTCGTTCCCCCTCAGGCACTCCAAAACCATGTAACTAATTGGAAATCATATTTGATGAAGAAGCTTGTTGGAGCATGTACACTTCCTGTGGATTTCCATTCCAAGttgGCAGAAAGCATGAAATACCCTTTCAGACAAGGGGTCAGAGTAGAAGTGGTGGATCGCTCTCTAGTTAGCCGTACGCGTAGAGCAGTGGTGGACACTGTGATTGGGGGCCGCCTGAGACTTATCTATGAAGATGCAGGACTTGGAGCCAGTGGTGAGGTGCTCTCAGACTTCTGGTGTCACATGTGGAGCCCCCTGTTGCACCCCATAAACTGGTCGGTTAGAGTTGGCCATGACATTAAGAGAACAGATAAATCTGTTGACATGAGCAGCCATCCAACATTTCGGAAGGGATTCTCTGATAGTGTGCCAAAGCAGTTCAAGACGTTAAGAACTGTTTATATGGATGGAGGATTTTTTGAGGAGGGAATGAAGCTTGAAGCCATTGATCCTTTGAACCTGGGGAACATCTGTGTAGCATCAATTCGAAAGGTGCTCTTAGATGGCTACCTCATGGTTGGTATTGATGGTGTGGAGATTGGTGATGGCTCAGACTGGTTTTGTTACCATGCCAGCTCACATGCTATTTTACCCACAGAATACTGCCAAAACAATGAAATacccctcactctgcctccagGCCATGATCAGGCAACTTTTACATGGTCTAAATATCTGGAAGAATCTGGATCCATAGCTGCTCCACGCAGATTATTTAACAcgGATCCTACAGGCCATGGCTTTACCGTGGGCATGAAGCTGGAGGCAGTGGACCTGATGGAGCCTCGGCTGGTGTGTGTAGCCACTGTGCAGCGGTGTGTAGGCCGGCTGCTCTTGCTGCACTTCGATGGCTGGGAATCAGAGTTTGACCAGTGGGTCGACTGTGAGTCTCCTGATATCTACCCTGTGGGGTGGTGTGAACTCACTGGCTATCAGCTTCAGCCCCCCATTGGCCcagAACCAAAGGAGCGACCAAACCCAAGCAAAAAATGGCTGGGTAAAAAaaGGAGACGACCTGGGAGGAAAAAGACAGTTGATGACTCTTCAAAAAAGCAGCTTCCTCAGCAAGATGTTCAGGTACAGCCAGACGAAGCTCCTGCTTCTACTCAGTTCCCCTCAGACCTGCCATCTCTGCCCACAGACACACCTACCAAGATCACAAGCGTACCAATCATCACACAGCTGAAGACTGAGACGGAGGAACAGGTTATTTCAGTTCAAGTGAAGGTAGAGGAGATTGAGATGGAAACCCCCATCACTCATAACCTACCAGCCGCTGACACTTCCAACACTCTCACCCCGCTCACCTCTCCCAAAAAAGAAGAGGGCCCTCTGTGAAATCCTGGAGTGCAGCTTGTATAAAATCAGAGCGGTACAGCTTCTTCAACTGATAGACATGATGAGTAGGGGAAGAAAAATAATCACTGGACTTTGACTATGGATTCTAAACTACAAGAAGAAAATCACTTGGTGcttcatattattttttatatatatattatgttttatttcttccTTGTTTGTACTCTTTCTTCAACAAGCTACTGAGCTGCTTAGATCATGTACAGTATTAAAATTAGGTATATTCattaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K24387 L3MBTL; lethal(3)malignant brain tumor-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649840.1 lncRNA downstream 98232 1720811 ~ 1727257 (-) True LOC111192345
XR_002649839.1 lncRNA downstream 105043 1718648 ~ 1720446 (-) True LOC111192344
TU45161 lncRNA downstream 650834 1174440 ~ 1174655 (-) True G33545
TU45154 lncRNA downstream 669312 1153432 ~ 1156177 (-) True G33539
TU45016 lncRNA downstream 903843 912388 ~ 921646 (-) True G33441
TU45350 lncRNA upstream 19684 1856968 ~ 1857715 (-) True G33690
TU45353 lncRNA upstream 25502 1862786 ~ 1863512 (-) True G33693
TU45402 lncRNA upstream 138545 1975829 ~ 1976108 (-) True G33731
TU45403 lncRNA upstream 139045 1976329 ~ 1976585 (-) True G33732
TU45446 lncRNA upstream 237051 2074335 ~ 2074606 (-) True G33759
XM_022668878.1 mRNA downstream 71946 1745216 ~ 1753543 (-) False LOC103044468
XM_007257214.3 mRNA downstream 71975 1749204 ~ 1753514 (-) True LOC103043761
XM_015607839.2 mRNA downstream 77446 1745216 ~ 1748043 (-) False LOC103044468
XM_007257217.2 mRNA downstream 77448 1745216 ~ 1748041 (-) True LOC103044468
XM_007257213.3 mRNA downstream 84014 1729023 ~ 1741475 (-) False LOC103042940
XM_007259081.3 mRNA upstream 33326 1870610 ~ 1878209 (-) False cbx7
XM_007259080.3 mRNA upstream 33326 1870610 ~ 1878208 (-) True cbx7
XM_022668889.1 mRNA upstream 41974 1879258 ~ 1889279 (-) True josd1
XM_007259083.3 mRNA upstream 52987 1890271 ~ 1895993 (-) True LOC103046112
XM_007259084.3 mRNA upstream 60901 1898185 ~ 1904629 (-) True xrcc6
TU45334 other downstream 12867 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 699022 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 699953 1125465 ~ 1125536 (-) True trnaq-cug
TU44781 other downstream 1424177 389469 ~ 401312 (-) True LOC111192416
XR_002649841.1 other upstream 185457 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 197810 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other upstream 198841 2036125 ~ 2042274 (-) False LOC103022010
TU45542 other upstream 331739 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 357473 2194757 ~ 2196095 (-) True G33836

Expression Profile