RNA id: XM_022668932.1


Basic Information

Item Value
RNA id XM_022668932.1
length 4085
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC103044368
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4219467 ~ 4440792 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCATCAGTTTTCAGAGCAGggctccctcctcctcctcccatcgttcccctctctctccccctctctctcccttactcTATCACTGTATTACCGCCAGTGTGTGTCTCTCAGTGTGGGAATGTAGCATATAGACTTGATGGCTGCACTTCTTTTTCCTTTCCAGCACTAATGCACTGAAGGACCTTGCACTGACAGTTGGACACGCGTTGTGGTTAGAAGGGGGGCGTTTAAGGGCACAGATAGGAGGGGGAAAAACAGGATCAAACGGATTTAACCCTGCTGATTCCCGCGCATCTTTGTGCTGTCCGCTGCTCGGGCTGCTTTCTCTCGGGGTGGGAGATTACGGCtgactgtgtctgtgtgtgtgcgcatgtgtgtatGCTGGAGCGCCgctggaaagagagagagagaggaagcgaAAAGAGACCGCAGCTACGGCTGTGTCTAGGGAAAGCAAGGGGCAAGCTgcaagctgctgctgctacctGAGCTGCTTTTGCCCactgcacatacacacagacacgcacacacacacactcgcgcagaGGCAGGGGCTGCGCCAGCCACCACGGTTACTGCGTTAGTGCAGTTGCGAGAGGAGAGGAGCTGCAGCAGGGAGTGTTCTCTGCGCACACATGGATTTTACGGCACGATTCTTCTAACGGCTCCGACTGCCAGCCTTGTGTTTCAtggattgttatttttttccattcccGGCGTTTTCTTCTTCTTGGAGCATCTTGGGAATTATCTTCATCTCTCCGGACGCTGAACTAGATAGAGGCACGTCCCTTGATTTCCCCCACCCTCTCCTCCACTTCCCTTCCTTTCCTTTACTTACCTCTGCTGTCTGAGTGTGGGTTTGTGCAAGAGTGCGTGTTTGTGCACATGATTATTCTTATCTTGTGCTTGCTATTGCattgtattgtgattattgCATAGGGTCTGTATTAATCAGTTCACATATGGGCTAATGCTGAGTGTTATAATGGTTTTTCAGAGTTTGCATGTTTCTTCGTGGTTGTGAACGactgtgcgtatgtgtgtgtgtgtgagcaagtgtatgtgtgtgcgtgaatGTTAATGAGATGCCCAGCCCTGCTTCCCTCCCCGGCCCCCTCCCCTGCCCGCtctgccgccgctgctgctcCTTAGCCGGGCCCTGAACTCCGATAGCATGAGCGAGAGAACGGCACTAGGGGCCACCATGGAGACCATGACCCTGGAGGAGCCTGGGGGTGAACAAGCCTCTCCCCGGGTCCCGGGGCCCCTCCGCTGTGGCCCCTGTGCAGTGTGGCCCCGCCAGCAACAGACGTGGCTGTGTGTGGTGCCCTTGCTGATGGGCTTTGTGGGCCTGGGTCTCAGCCTGATGCTACTCAAGTGGATTGTGGTGGGCTCAGTCCAGGACTACGTCCCCACCGACCTGGTGGACGCCAAAGGCATTGGGCAGGACCCCATCTTCCTCTCAAAACCCAGCGCCTTGCCAAAGGGCCCAGATGTCCCCTCGGCATCCACAGCAGCTCCAGCCAATACAATGGGCCCTGGCTCTGCTGCAGATGGGACCGGTGCAGTGCAGAGGACTCAAGCTGGACCTCCTTCTAACCACTCAATCGtcgtcagcagcagcagcagcagcagcagtggaggGAGGGCAGCCGGGGCAGTTGGAGGAGGATCAGGGAACAGAGTCCCTCACCTCCATAACAGGGTAGGCACAAGAGCCAATGGCACTGCCTCCACTCGCCCTGCAGCACCTGGAGGCAAGGAAGTGACCCCACGCAGCACAACGGTCAGAAAGCCTGGCGGCGCAGCCGGAGGCCGAAATGCTCAGCCGTCCTCCAGAGCAGGCCCACCAAGCCCGACCTCAGTCAACACAACTACAGCTACTTCTGCCACTAGTACTACTGCAAAAAGCACAACTTCTACTCGAATGGCCCTACCCACCACCTCTACCCCTACCGCTCCAGCCAGGCCCACTCAGCGCTTGAACCATGGACGCTCTTCTAAGGGCCCATCCACCAAGCCCACACGTCCTCACCACCGCTTCAGAACCCTTGCACCTACAACCCCGACGGTCCGTTCCGAGTTCTTCAAGCCCTGCCAAGACAGCCAAGAGCTCGCCTTCTGTCTGAACGAGGGAGAGTGCTTCATTATCGAGACAGTGGCAGGAGTGCATAGACACTGCAGGTGTAAAGAGGGTTACCGCGGGCTTCGCTGTGACCAGTTTGTGCCGAAGACGGACTCCATCCTATCTGATCCAACAGCAGACGAGCTGGGTATCGAGTTTATGGAGAGTGGAGAGACGTACCAGAGGCAGATCCTGTCAATCTTCACCATCGCCATGGGAATCAGCTTGCTGGGAGTGGCCTGCATGGCTCTTTACTGCAGAAACAAGAGACAAAGGGAAAAACACAGAGTCCACCTGACAGAGATGCGCAATCTGAGGGACTGCAGTGTCAATGCCTTGCGGCTCATGTCCAAATCCAGCTCCGGTGCTGAATGTGGCCTCCAGCCTCAAAAGtgctgTAAAGCCCACGGGTCCTCCCCTGCACCCGGCAGAGGTACAGTGCACAGCAGCTCCaaacccagcagcagcagcctgtctaCAGGGAAACGCCGCAGCTGTTCCTTCTCCACTAGTCCTGCTATAAAACAGAAGATACCCAGTCACAGATCTGCTGCACGATGGACTCCGCCCATCTCCAGAGCAGGACATCATCTGATTGGAGGATCAAAGGATTCTATTCACAGCTACAAACACCTCCAAGAGGTGGAGGCCACAGACATGACATCAGAATCCTTGAGAAGGTGCCAGTCCCACACTGATGGCAATCAGCAGCACAGCCACTTGTATTTGAATATGCAAACTGTGTCCTCTGTGCCTACCAGAGGAAGACTGGCCTGCACTGACGTTCCCTGCACTCGACTGGATCAGGGAACGGCTTTTCCTCGCCCTTCTCACCGCACCTGCTCTGTTCCCATCATCCCCTCTGTCCAGGCGTCTAATGTGGGGGACAGGTCCGGCGACGAAGGCGGTGCCACGCTGCTTTACAGAAGTGGAGTTTCGGCCAGCTACACACTAATCAATCCCGAGACTGAGGCGGAGTCACTGGCCAATTCCAGCCAATCACTGGCCACCCCCTCCACCGGGTCGCACGGACTGACATGCTCAGAGTCCGTGCTGGCGGTGGGCCCAACTAAACACAAAAGCCTTGTCACTTACACAACAGCCTTGGGAGCAGGTACAGACTCCAGTAGAGCAAAGACTGTCATCTCCATGACCGTATTAGCGTCGTCCAGCCTGTCCAAATCCACTGGAAAACTGGAACGCCGGCCCACGCGGTCAGCTCGCAGAGGGAGTCTAAGGGAAGATTCCGCTGTTGGTTTACAAACATCATTTTCCAAGGGAGAGAAAGACTTCTATCTGTCCAGTGAGCTTAGAGGTGTGCCCTGTCTCACACCTCCTAAAAGCTGATTGGATAAATCAATAGATCTTATGAATTGCATACACAAATGTTTATTGGGGGAGAGACAGGGTGGGACACGGCCTCCCCAAATCTCCACACCCTGGTGTTGACCAATCACAGGACTCTCTGAACTACATACACGGATTACAGAGAGAACCCTGCTAAAGTGACAGAATTTCAAACCACTGGATAACTAAGAACACAATGTGAATAAATTATGAAGAGGTTAAAGACTATCGTTGGGATGTTGATTTAAAGAGGTATGAAAGAAGATAAAAGATTTATATGCcactatttaacaaaaaaaagcttctacTTAGAAACCAAATAGTGTCATCTCTATGTTGTTTctctattgtaaaaaaataaaaaaataaaatataatagatGTCATAACTACGTGTATGTCATATATATgtcattatataaatatatatatgacatacaaagagatttaaaaaaataaagacgcAGAATATGGTAAAGAAGAagcttttcattttaaacagctcTGCCATCCTATGATAACCCAGTCCAACTCTGTCTTTTGTCTGTTATGCTTGAGGACGTGAGGAGAGTTTGGTGGTTCATGAATAAAATCTGTATGTCACCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46182 lncRNA downstream 41814 4171053 ~ 4177653 (-) True G34311
TU46162 lncRNA downstream 84180 4133286 ~ 4135287 (-) True G34300
TU46159 lncRNA downstream 94646 4112381 ~ 4124821 (-) True G34298
TU46160 lncRNA downstream 94646 4114892 ~ 4124821 (-) False G34298
TU46158 lncRNA downstream 94646 4117354 ~ 4124821 (-) False G34298
TU46218 lncRNA upstream 21085 4461877 ~ 4509252 (-) True G34342
TU46259 lncRNA upstream 145653 4586445 ~ 4586858 (-) True G34381
TU46263 lncRNA upstream 186890 4627682 ~ 4628175 (-) True G34385
TU46315 lncRNA upstream 333021 4773813 ~ 4774992 (-) True G34429
TU46305 lncRNA upstream 358319 4799111 ~ 4883208 (-) True G34422
XM_007259178.3 mRNA downstream 57611 4148188 ~ 4161856 (-) True LOC103021465
XM_007259143.3 mRNA downstream 121512 4088103 ~ 4097955 (-) True LOC103036928
XM_022668927.1 mRNA downstream 326102 3885324 ~ 3893365 (-) False LOC103038619
XM_022668926.1 mRNA downstream 326105 3885324 ~ 3893362 (-) False LOC103038619
XM_022668928.1 mRNA downstream 326106 3884272 ~ 3893361 (-) True LOC103038619
XM_007259180.3 mRNA upstream 151242 4592034 ~ 4703993 (-) True atrnl1
XM_015608360.2 mRNA upstream 189450 4630242 ~ 4703993 (-) False atrnl1
XM_007259183.3 mRNA upstream 270308 4711100 ~ 4791734 (-) False LOC103022618
XM_007259181.3 mRNA upstream 270308 4711100 ~ 4772798 (-) False LOC103022618
XM_007259182.3 mRNA upstream 270308 4711100 ~ 4743453 (-) False LOC103022618
TU46045 other downstream 335998 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 430275 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 430361 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 430403 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 817090 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 1467182 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 1495043 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2024576 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2096229 6537021 ~ 6541364 (-) True G34953

Expression Profile