RNA id: XM_022668948.1


Basic Information

Item Value
RNA id XM_022668948.1
length 1810
RNA type mRNA
GC content 0.47
exon number 9
gene id vti1a
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5400928 ~ 5571634 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGTTCAGTAACACAGCCAGGAAGTGACGGTGACGTCAACAACAACATTGGCTACAGCAGCAGGAGAGTATCCACCGCTATCTGTCGGTAACACACCAGAACCCACCGTTTACAGACATGTCGTCCGATTTTGAAGCCTACGAGCAGGAGTTCGGCACCCTCACTGCGGAAATTACCAACAAAACCGGCAGAATACCCAAACTCAGCGGCGAGGAGAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGTTGGAGCAGATGGATCTGGAGGTGCGCGAGATTCCTGTCCAGAGCAGAGGAATGTACAACAGCCGCCTGAAGAGCTACAAGCAGGAGCTGGAGAAGCTGGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTCGGGGATGACGGCAGCTCCTCTGAGAATCAGTTGATAAAGTTGCGTGAAGAGAGAGCACATCTGTTGGACAACACAGAGATGCTGGAAAGGTCATCTCGGAGACTGGAGGCTGGCTACCAGATAGCTGTGGAAACTGAGCAAATAGGACAGGAGATCCTATCCAACCTGCACAGCGACCGTGAGAAGATCCAGAGATCCAGAGATCGGCTGAGAGAGACCGATGCTAACCTGGGCAAGAGCTCGCGGGTCCTGACGGGCATGCTGAGAAGGTAAGAGGAAGGATCATTCAGAATCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCCTGGCCATCTATTTCAATCTGCGAGGGCACTGATCTCCACTGACtggtcctgtgtgtgtgcgtgtgtgtgtgtgtgtgagcgtgtgattAATAGCGACAAAAGCGGGCTGGAGTAATTAGAACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGATGATCTCCtctgctctttctctcgctcttccAGAGCAGAGCTACAACTGGCTCTTCTATCTCTACATCCTATTTATGTTTTACGTTTATATTACTAGGACTGTACTCTTCCATCCTTTTAGCATGGCATCTCCATTTTGACTCCCTATAGACTGGCCATGTGTGGACATCTGGACCTAGGTGGACCAATAACAGCAGGAGATTGGAAATCTTGATTGGGACGGGTGGGGGAAGGGCTTTCTTTACTACGACctgctgtattattttattaatattatttttttactttttgtcccGATAATGTTTAAATTCCaactatatgtatgtatgtatgtatgtatgtgcacaagcatgtgtgtgtgtgtgtgtatttctgtatacatatacatagtCCCAGCATAGTGTCCTTACTCTCTCCCGGGTGTGTGGCGTGTGCAGAAAGGGCCTTACAGTCAGGCCCCCAGTGCAGCAGCACTTAGCACACAGTGCAGAATCACACACTACACACGGCCCAAAGGTCAATGCCTTTagcagcagacacacacacgcctcTCTCAGTGGAGCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCTTCTAAGGTCAATAAAAGGCCTTGCGTGTGTTCTGGCAAACCAGCAGGACCACTCCCGAATCCTATGGCCGCTCATAGCTTTACTAATGATGTTTGGCATAATCATTCGTTGGCGCACACACCGAGTACTAATGAGGACTcttatctgtatttatttcatgTTGATGGTTATTTGTTATCTGTATTGATGTGTTTTCCCCTCTTTCAGTGGATTTGAAACTGATTTTAGTGAAATGTAAAGGCTATTGTTTTTCTCTGACATAAAGATTCTAAACATTAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08493 VTI1; vesicle transport through interaction with t-SNAREs 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46666 lncRNA downstream 9608 5391095 ~ 5391320 (-) True G34682
TU46475 lncRNA downstream 207069 5191033 ~ 5193859 (-) True G34556
TU46458 lncRNA downstream 248515 5151372 ~ 5152413 (-) True G34543
TU46460 lncRNA downstream 249965 5150310 ~ 5150963 (-) True G34544
TU46457 lncRNA downstream 256872 5143724 ~ 5144056 (-) True G34542
TU46673 lncRNA upstream 1839 5573473 ~ 5574758 (-) True G34688
TU46695 lncRNA upstream 73272 5644906 ~ 5645105 (-) True G34708
TU46700 lncRNA upstream 87390 5659024 ~ 5659904 (-) True G34713
TU46707 lncRNA upstream 105784 5677418 ~ 5681939 (-) True G34719
TU46759 lncRNA upstream 290823 5862457 ~ 5867932 (-) True G34760
XM_007259226.3 mRNA downstream 38442 5260389 ~ 5362486 (-) False tcf7l2
XM_007259230.3 mRNA downstream 38443 5260389 ~ 5362485 (-) False tcf7l2
XM_022668940.1 mRNA downstream 38443 5261507 ~ 5362485 (-) False tcf7l2
XM_022668943.1 mRNA downstream 38445 5257878 ~ 5362483 (-) False tcf7l2
XM_022668952.1 mRNA upstream 7696 5579330 ~ 5596438 (-) False acsl5
XM_015608339.2 mRNA upstream 7696 5579330 ~ 5596438 (-) True acsl5
XM_022668954.1 mRNA upstream 28734 5600368 ~ 5687159 (-) False tectb
XM_022668953.1 mRNA upstream 34987 5606621 ~ 5687158 (-) True tectb
XM_007259249.2 mRNA upstream 199985 5771619 ~ 5803122 (-) True nrap
XR_002649848.1 other downstream 38443 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 1517459 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1611736 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1611822 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 1611864 3783408 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 336340 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 364201 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 893734 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 965387 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 1048046 6619680 ~ 6653585 (-) True G34981

Expression Profile