RNA id: XM_022668954.1


Basic Information

Item Value
RNA id XM_022668954.1
length 2123
RNA type mRNA
GC content 0.45
exon number 14
gene id tectb
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5600368 ~ 5687159 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATATTATATGTAGCCTCATGGAGAGGATATTTTTAGCTAGATCATTTTAAGGATTTCTTGAAATATGCAACACTCAGATGAAGTCTATGAGCAACAATAGAAGGAAGTTTGCTAGGAAAGCCATGGTATAAGGTGACAGGGGCCAACAGAAGCTGAATAAGAGCGACCTTGATGACACTGTAGCCCTTAAATTCCATGGCACGACACCAGAGAGGGTGGGATGCATTAGATAACTGCTAAAAGCACGCTAGTGCACCTGTTCCTCTGCCTGACTGAAGGTCATTATGTAACAAAGCACGAGTTTGAAAGGAACCCAACCCTGCTCTCCCTTACCTGGGAAACCCCACGTCATTCCTCAGGGCTTATAGATGTGAATTAAGCAAGGACTTCTGTAGATGATGTTTAATGAATGGCTTAGATTAATGAAGCACCTATGTGTTGACTTAATACTATATCTTTATGTTAGCTATGTAGAACAGATATGTTGCCGTTGTTTAAAAATGCTAAGAAAATGGTCTTCCCCTGAGACACTGTTAATTTAAAAGTCAATGTCTGGCAAGCACAGAAAGCTTTTGTGCTTTGGTTCACAATGCTATCACCAAATGGCCTCGCCAGACTGgcagacagaggaagagagggggGTTACTGACTGTCTGCAGAAATATAAAACGGCCCCCCTGCCGGAATCGATGAACTCTACCTGAAACCTGTGCTTAGTTACCACTAATCGGCCAACCGCACCTAGACCATGACCATCTGGTAGATAACCAAGCAAAACTTCACGAGCCAGCGCTGGACATGGCAGCTGTTGGCgctcttttctttttgcttCCAGTTTCTTGGGCCTGCGCTCCTCAGAAAGCTGATTATGTTATGGTTTCCTGTTTTCCAAATGCAATCATTGCGAATGTTCCTGAGTGCCCGTACGGATGGGAGATAGGGCAGTTGTCTCTGGGTGGTGTGTGCTATTCAGGGATCAACACTCCTGGCTTCTACCGCTTTACAATCCCTGACCTCACACCCAAAAACCACTCGTACTGTGGCACCCTGTCTGAGTATGTTGGAGGCAAAGACCCGAAGTACATTTTCTACAACTCCATCGTGTCGAACGATTCCTCGCTCACAGTGCGGAACCAGCCAGTCAACTACACCTTCAGCTGCACATACAAAGCGGCTTACCTGGTCAACAACGCGGTCTTCAGCCAAAGAGTGGCAACAGTTTATGTCAACAACGGGAGTTTAGGTTCTTTTAAGTCTCAGTTGTCTATGAACGTTTTCACAAATTCAAAGTTCCTGTATGCTAAGGATGCTCCATATGTTATTGATACATCAGAAATTGGCTCAGAGGTTTTTATTGGTATTGAAGCAAAAGGACTGAGTAACAGGTTTAAGGTGGTTATAACAAACTGCTGGGCAACACCTACTCCATATTCAACAGACAGGAAGAGGTGGAGCTTGATTGTCAATAGCTGCTCCTCAGATAATACAGTCACCATATTTGAGAATGCCAAAGACAGTCGCTCCATGTTCAAGTTTAATTCGTTCCGCTTTCAGCGCTTAGAGAAGGTGTCCACGGTCTGGCTTCACTGTGAAGTTCAAGTGTGTGATGGAGAAAAGCTCTTCTGTCAGCCGACTCCATGCACTTCGAGGAGCACCAAACTGCAATCTGACCCCAGCGGAGGAATTTTGACAATGGAGTTTCAAATCAGAGCTGAGCATTCCTCCAGTTATACACATCTTGCAGCATACTGGATAGAAGCTTATCTGCTCTGGCCTTTTCTATAGTGAGCTGGGTGGTCCTCTCCTCTACTACTTCTTCAAGGAAAGGGGGCCTGCTTCCTATGACACGCTGAAGCTGTCCGAAATCCAGTTTTCTTCCCTCTCATCTTTCTCTTCCTGAAAAGCCATAAGCTGATGCCAGATGAAGAAGCTGAAAATGAGCCACTTTGACAAGGGCCACATCGTGATGGCTAGAACATCTacaaaacatcaggcaggtctttcATGGGGTTTCTGGAAGTTTTCTGAAGTGGTCCAAGAAAGGACAATCAGgaaaaccctaaccctaattgcTGCAATCTATGGGGACTTGATGGACCTGGCACTACTTGATTTATATCTA

Function

GO:

id name namespace
GO:0048840 otolith development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46673 lncRNA downstream 25610 5573473 ~ 5574758 (-) True G34688
TU46666 lncRNA downstream 209048 5391095 ~ 5391320 (-) True G34682
TU46475 lncRNA downstream 406509 5191033 ~ 5193859 (-) True G34556
TU46458 lncRNA downstream 447955 5151372 ~ 5152413 (-) True G34543
TU46460 lncRNA downstream 449405 5150310 ~ 5150963 (-) True G34544
TU46759 lncRNA upstream 175298 5862457 ~ 5867932 (-) True G34760
TU46770 lncRNA upstream 199879 5887038 ~ 5891991 (-) True G34765
TU46774 lncRNA upstream 240530 5927689 ~ 6012669 (-) True G34769
TU46809 lncRNA upstream 355766 6042925 ~ 6043439 (-) True G34791
TU46833 lncRNA upstream 361847 6049006 ~ 6052438 (-) False ablim1
XM_022668952.1 mRNA downstream 3930 5579330 ~ 5596438 (-) False acsl5
XM_015608339.2 mRNA downstream 3930 5579330 ~ 5596438 (-) True acsl5
XM_022668946.1 mRNA downstream 28734 5400928 ~ 5571634 (-) False vti1a
XM_022668948.1 mRNA downstream 28734 5400928 ~ 5571634 (-) True vti1a
XM_022668947.1 mRNA downstream 28735 5400928 ~ 5571633 (-) False vti1a
XM_007259249.2 mRNA upstream 84460 5771619 ~ 5803122 (-) True nrap
XM_007259251.3 mRNA upstream 131563 5818722 ~ 5822431 (-) True LOC103041412
XM_007259256.3 mRNA upstream 155819 5842978 ~ 5852808 (-) True dclre1a
XM_007259261.3 mRNA upstream 216429 5903588 ~ 5928154 (-) True ccdc186
XM_022668970.1 mRNA upstream 241402 5928561 ~ 5934694 (-) False LOC103043680
XR_002649848.1 other downstream 237883 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 1716899 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1811176 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1811262 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 1811304 3783408 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 220815 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 248676 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 778209 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 849862 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 932521 6619680 ~ 6653585 (-) True G34981

Expression Profile