RNA id: XM_022668970.1


Basic Information

Item Value
RNA id XM_022668970.1
length 2096
RNA type mRNA
GC content 0.36
exon number 11
gene id LOC103043680
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5928561 ~ 5934694 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTCTTCCTGCTTGTGAAGCACTGTCTGTTCGTCAGGAAAAACCTGCTGTTTCACAATGCGGCAGTGTGGAGACAAGGTGCCTGATCTGTGGTGTTTTGAAGGGGGATTTTTTTGAACAATGAAGCGACTGAACCGTAAGAGCGCACTCAGTCTGGTGAAGGAGCTGGATGCGTTCCCCAAAGTACCTGAGACATATGTTGAAACATCAGCTCTTGGAGGAGCAGTGGTTGGAGCAGATGTTCTGGACAGGGCAAATACCATGGTCTCTTTAAAAGAACTCATATATGAGCCGgTTCATTATGAACTTAATCCTCAGCAAAGGCTTTGGCAAAAGACACTACAGCAGTTCCAGGGCCAACTCACACGAGAACGCTCTCTTAAAGATGTGCttttcaaaaacataaaaaaggaacTTAATTTAACCCCAAGGATGAgGAATGATTCTCTGTCCAGACCGCCCAGTGCCTGTAGGATATATGGAAACTTCTACGTGAACAAAGTAGAAGGAAACCTCCACTTCACGCTGGGCAAGGCCTTACAGCTACCCGATGGACACACCCATTTTGGATTATTATTCTTAAATAATGattttcagAACTTCTCTCATCGAATAGACCATCTTTCCTTTGGAGAAGTTGTACCAGGACGCATCAATCCTCTAGATGCTACTGAGAAAAATACGTTTAAAGGAAACCAGCAGTTTCAGTATTTCATCACTATTGTTCCAACCAGACTGCAGACATCTAAATTAACTCTGGATGCACACCAGTATTCGGTCACAGAGcagGAGCGGGTGATAAACCATACAGCAAGCGAACACGGTGCTTCTGGAATCTTTGTGAAGTACAAGCTGAACCCTCTGATGGTGAGGGTGAGTGAGGAGCACATGCCTCTAGGAAATTTCCTGGTGCGTCTATGTGGAATTATTGGTGGCATCTTTTCCACTTCCGATTTGCTCCACAGACTTGTAGGCTTTTGTGTTGACATTGTATATTGTCGGTTTAAACTTAGCAGCAGTAACCAAAACTAGGTGAGTTTTATTGGAGTTATGACGGACATTATGATCATAACCAGGATCTCTACTGTAAATATGCAGTACATGTTAATGctgtatatagtataacaggAACATTCAGTACACAAGAAGCTTTACAATTAGATTCAGCAGGGATTCAGATAATTACAGGTGTGTGCAGAGTGTGGACCACTCCTACAGGTGTCTACCACCTTTCAGAATTCAGTTCTAGACCTAATGTAGCACAATTAAAATCTATCAAAGCTAATTTAGGCATTCAGTAGTTTTTGAATAAAAACTCActtgtacattttaaataatcatacTTTTTTCATACTTTTGTTTATCTCACTGCTTTTCTTGCAGACTACAATTTTGAGTGCCTGTGTCTGCATAAATTATGGAGTACATGGAATGTGTAGATGTAATATAGTGAATAAAAACTTATTTGTAAACTTGTGtttagaatttaatttaatttattttttcattaaacatTTAAGTAAGTTGCAAATAAATCTTAAACCAAAGATTTGCTTGCAAAAAGTTATTGTTATATAAATGTGTCTCTACCTAATGGAATTTTATTTGTCTTCAGTGTTATGTGTTTATGATTAttgattaatgtttaataaatatcaaTGTCCAACTAATTAATGAAAATCTTTCAAAATATGGGTGTAGCAAAAATGAGACCAGTCACAGTCTTTTTCACCAAAAATGAGTTGATAATTAgtccttattaaaaaaaatgacaatgtaATGATAAATCATGGAACTTTTACTGTTAGTGCTTAAAAATGAAGGCagatactttttaattttttactcaaGTGAAGGTCAAGGATCTAGGATTTGTTTTCATACTTGTACTGCGCTGATAATACTTGTAAATTTTGCTTCTCTACtgtgaattttttatttatttttgatgttGTTTTGACATGTTCTGTTTGCCTTATTGGGTTAATTGAGCTGCATTTatgtcttttatttctaaatgatTTGATCATATTCTGTGGTGGtattgttcattaaaaacatttaaaccaaACTCTAATAAACAATTCAAATATCaaa

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46770 lncRNA downstream 36570 5887038 ~ 5891991 (-) True G34765
TU46759 lncRNA downstream 60629 5862457 ~ 5867932 (-) True G34760
TU46707 lncRNA downstream 246622 5677418 ~ 5681939 (-) True G34719
TU46700 lncRNA downstream 268657 5659024 ~ 5659904 (-) True G34713
TU46695 lncRNA downstream 283456 5644906 ~ 5645105 (-) True G34708
TU46809 lncRNA upstream 108231 6042925 ~ 6043439 (-) True G34791
TU46833 lncRNA upstream 114312 6049006 ~ 6052438 (-) False ablim1
TU46866 lncRNA upstream 214536 6149230 ~ 6152861 (-) True G34829
TU47029 lncRNA upstream 425217 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 432086 6366780 ~ 6368106 (-) False LOC103026268
XM_007259261.3 mRNA downstream 407 5903588 ~ 5928154 (-) True ccdc186
XM_007259256.3 mRNA downstream 75753 5842978 ~ 5852808 (-) True dclre1a
XM_007259251.3 mRNA downstream 106130 5818722 ~ 5822431 (-) True LOC103041412
XM_007259249.2 mRNA downstream 125439 5771619 ~ 5803122 (-) True nrap
XM_022668954.1 mRNA downstream 241402 5600368 ~ 5687159 (-) False tectb
XM_022668972.1 mRNA upstream 46295 5980989 ~ 6038592 (-) False afap1l2
XM_007259269.3 mRNA upstream 46295 5980989 ~ 6038592 (-) False afap1l2
XM_022668971.1 mRNA upstream 46295 5980989 ~ 6038592 (-) False afap1l2
XM_007259268.3 mRNA upstream 46295 5980989 ~ 6038592 (-) True afap1l2
XM_022668973.1 mRNA upstream 46295 5980989 ~ 6031321 (-) False afap1l2
XR_455628.3 other downstream 407 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 566076 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2045092 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2139369 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 2139455 3783408 ~ 3789106 (-) False prr15l
TU46775 other upstream 1141 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 530674 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 602327 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 684986 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2990134 8924828 ~ 8927717 (-) True G35429

Expression Profile