RNA id: XM_022668974.1


Basic Information

Item Value
RNA id XM_022668974.1
length 2525
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC111192358
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6000006 ~ 6002530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAAGTTGAAAGCCCTTTTTAGTCTCGATCTGGTTTTGGAAAATTGACCCTTAGAACAACATTATgcactatttttatatttataagattAGACTCTTTCTGACTGCAGCCAACACACTCCCTTTCCTGACTGACTCTGGTGACCGGCCTCGTTGCTATCTTTAGGGTGGCTCTATTTTCAGAAACAGGAGAGGAGTGTGTCTGAAGCACCACAGTACCACGGACACGCTTATGTTTAGCGTCAAGCTCggacaaaaacaataattatctGGACCTCCTTTCAGGCCACATGGTCAGCGTGGATGAATTACTAGGTGGACAAAGACCAGCTGGAGGTGTTATGGAGCCTCCCAGCAACCTGGAGCTGGACAGGAGTCCTAAGGCCCAGTCTGAAGCGTCTGGGTTGGAAGAGGGACTGGGGGCTGCAGACTGCTTGAGGGTAAGGGTGGAAAGTAGTGTGTTTACTGTGGATAAAGCTTTGCTGAGCCAGAATTCAGAGTACTTCCGCGCTCTTTTCCGCTCTGGGATGAGGGAGAGCCATCAGAATGAGCTTCATTTGCAGGGGGGTCTGAAGGCGAGGGGGTTCCTAATCGCTTTGGCGATCTCCAGAGGCGAACAGCCAAGTATGAGCGATCCAGATGAGATTGTGGAGGCTGCAGAATGTGCTGCGTTTCTTCAAGTGGAGGCCTTGATCCAGCACCTTATAGACATCCTAGACACGGACAACTGTTTCCTTCTGTACCATACGGCGGCTGTGTTTGGCTTATGGAGGTTGTTCCATAGTGCAGCACTGTTCATCCGTGATGCCTTCCATGACCTGCAGGAAGCAGCAGACTTTCTTCCAGAGGAGATGCTTTGCTATGTGGAGTCACTTTCACCTGCTTCTTTTATTGCTCTAGGGACCCACACTCCTTCTATGAAGATTCTGCAGGATTCCTTCAGGACAGTGTGGTCCCTGAATGAAGAGGAAGGTGAGTGGAGGTTCCTGACTGACCTGCCCGTAGATGCCAGCACCTCCATGGCTGGGGTGGCTGTGGTGGACAACAGGCTGTATGTGGTGGGAGGCGTGCGAGGGGTTAGCATGGAGACAGTAGACTTCAGCTTCTGCTATGATGTCCTCAGCAACTCCTGGAGCATGTTTGATGGGCCTCAGCAGCCCAGGTACAACTTTACTCTTGTGGGTCACGAAGGACATTTGTATGCCTTTGGTGGTGAGTACGACAAGAGGATCATTTCTTCTTCAGAAGTTTGTGACGTGTCTACTCATGAGTGGACTTTTGTAAAGCATGCTCCTCGCCCGGTGGCAGGTGCGGCGAGCACAGTCGCACGCCGGAGGATCTTTGTGTGTTTCTGGAAGCCTCCCGACACTACGGATATCTACGAATACGTTCCTGTAAAGGATGAATGGATCTTGATCACCACTATGATACGGCCTCAGAGTTACGGACACTGCATGGTCGCACATGGAGACAAGTTATATGTAATGAGGAATGGTCCTTCTGATGACTTCTTGCGCTGCCTTATAGACTGCTACAACATCACCACTGGTCAGTGGATGTCCTTACCGGGACACTATGTTAACAGCAAGGGGGCGCTCTTCACAGCTATGGTGCGAGGGGACTCAGCATTCACAGTGAACCGCAGTCTAACTCTGGAATACCAAATCTGCAAAGATAAATGGAAACCTCAAAGGCAGATGACAGGATTCCCAAAAAATGGGTCACTTTGGACCTGCATACTCAGACTTCCTAGAATTACAGATTCAGATGTAGTAAACAGTGTCGATGGATTACTAGAAACTGCTACAGATGATGAGAATGAGGAGGAGAAGATAGAGGTTAACCCTTAGCATTTTGCtctacactgatatgccaagaGCTATGGGaatgcagtatgtaaattgatcatgaagtgctACCTCAGGTGGATGGTGTAGGAACATCCACACCTGTTAGTAAGAGTGATCAATTTCGAGGCAAATGGGTGCCAGGTGGAAGGGTCATTCCATTtacaggcatttaacattccccGATCCACAGTGTTTGGTGTATACCAGGAAAACAtaatagaaggcattactaaccacagtggacagtgcaatgGATATTAATCATTGTGATCATTGGCATCTGGCTTAATTTGTCCATGCAAACTGACCAGCGGCACCCACATAAGGCACTGAATTACTGCAAAAGTCATGTGATAATATACTATTTCCTGTCCCATGATATGTGGCATGtcactgtaattattataattttttttttgtttttttactgtaattcgATTTGGTTTGCATTCTGTTTTGACAAGTTCTAGTTCTACCTTTTCATCCATATGTTTTCTGTTTCTTAGTTTCAATTATAAGAAATTATGAAAATATGGTAATTGACTGtacaaacaattatttttatatgaaaCTTATTTCATAACTTATTTAAAGTGCATTGCTTGATCAAGCTTATATCGTTATAAACACTTAAATGCCTCTtactttacaaaatgaataaacatatttagttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46622 lncRNA upstream 32812 5966688 ~ 5967194 (+) True G34657
TU46601 lncRNA upstream 83604 5914241 ~ 5916402 (+) True G34644
TU46590 lncRNA upstream 152081 5844902 ~ 5847925 (+) True G34636
TU46539 lncRNA upstream 206188 5788758 ~ 5793818 (+) True G34602
TU46556 lncRNA upstream 257562 5739614 ~ 5742444 (+) True G34615
TU46808 lncRNA downstream 40316 6042846 ~ 6043340 (+) True G34790
TU46881 lncRNA downstream 253076 6255606 ~ 6258050 (+) True LOC103045604
TU46883 lncRNA downstream 256023 6258553 ~ 6258814 (+) True G34841
TU46884 lncRNA downstream 263779 6266309 ~ 6266668 (+) True G34842
TU46879 lncRNA downstream 265898 6268428 ~ 6270954 (+) True G34837
XM_007259270.3 mRNA upstream 18789 5949544 ~ 5981217 (+) True vwa2
XM_022668965.1 mRNA upstream 51377 5904106 ~ 5948629 (+) False tdrd1
XM_007259262.3 mRNA upstream 51377 5935995 ~ 5948629 (+) True tdrd1
XM_022668966.1 mRNA upstream 51377 5935995 ~ 5948629 (+) False tdrd1
XM_022668967.1 mRNA upstream 51378 5935994 ~ 5948628 (+) False tdrd1
XM_007259273.3 mRNA downstream 146757 6149287 ~ 6152869 (+) True trub1
XM_007259292.3 mRNA downstream 178294 6180824 ~ 6185239 (+) True LOC103024806
XM_022669011.1 mRNA downstream 244116 6246646 ~ 6255637 (+) False LOC103045604
XM_007259300.3 mRNA downstream 511973 6514503 ~ 6541364 (+) True slc38a10
XM_022669014.1 mRNA downstream 511973 6514503 ~ 6541364 (+) False slc38a10
TU46176 other upstream 1821923 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3943132 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4162430 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4611987 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4878134 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 617140 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 617141 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 728424 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 899887 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4470844 10473374 ~ 10474792 (+) False G35744

Expression Profile