RNA id: XM_022669017.1


Basic Information

Item Value
RNA id XM_022669017.1
length 2654
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC103027554
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6553333 ~ 6558835 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGGTATATAACGGGGGGAGATCGGGAGTGGGCGAGCTCTCCGTAAACCGGCTCTGATTCTCTGTCTCAGCTGAAACCACCTGAACGTCAcgtaaacagcagcagcagcagcagcagcagcagatccggctgGCTAACTAACTACTGACTGCTGTGGGGAAAATGAAGGCTGTCAGGAGCTGCCAGGCTGTCTGTGTCCGAGCCGATCTTTAACCATCTCCACCAGCGTTGCTCAGTTGGATCCTGTAGCTTTTTACTGAAGACGTGCAAGTGTGAGCACACAACCTCGCACCCTCTGCCTGACTGCCTACACAATGCACAGCTTTCCCATGTTTACAGAAAGCAGAAAACGGCGTCACAACAGCTGTGATGCAGATGACGCACAAAACCTGCCCCAGGCTAAGCGGTTGGCAAGCCAGCCTTTCTTCCCTGAACTGGGCCGTGATGTTTGGGATTCTGAGTCTTCCAGCAGTGATAGCAGTGGCATTAGCACTCCAGAGAGGCTGACAGGACCGAACTCTACCAACCAGTCTACAGACCAAAAGGAAAATTGCATCCTGAAGGATTCCTGCAGCTCTTCTGGTCATTTGTTTGAAGAGCATGCCATCTCCTTAAATGATAGTGATTCCTCTTACTGTCATATCAATCGCATCCTTAGAAATGCCCATTTCAGTAGCCTGCAATCTCGAGGACAGCCAGGGCCAACATGACCACCTCCGGCTCTGTTAACACCCAACACCCAGGGGCTAAAAGCTCAGTGCATTGGAAACCCCTCAGGAGGGGAATCTTTTGTCACTGTATGTCTTCAGCCCTGGAACCTCCAACATGAGGTTATGTCCTCACTAGCCATTCAGATTAATTCATTTGGTGTCCGCTAGCACTtttctattttcataaaatgtgtGAACGTTTGTTGTTTTCATGTTCATCATGATCTCTGCTTGGGTGCTACAGTACAAAAGGAAACCTCAAATGGCACTAAAGTGCATGTAATATTATGTAACCTTATCCCTTTTACTCAACCAGGCAAATATACTTGGTGCTACATGTTAAACAATACAGTAAAGAGGGGAATGCATTAAGCAGCCTTTGTAGGTGGTGCACCCAGAAATCAGTGAGCAAAGTGTGAAATGGAAGGATGGGGGAGGGGGAAATATGTAGGCAAATGATGTACCAAGGACCTCTGGGAGTGTGTAGTTAGTGTACCTAAGCACATGGGAGTATTCTTGCAGTCTTTCTGTACAACACAGGTTCTTAAACACTGGACCTGGAGTACATCCTGCTCTgtacatttagtgttttttgttttcctgctGAAACACACCCTCTTCAACTCAGGAAGGGCTTCTTAATTATCTGGTTATTTGCATCAGGTGGgctaaaaacagagaaaacactgaaaatacaAAGGGCAGGGAGGTATTACAGGATTATTGTTGGGAACCACTGATGTGAAAGATTGCAGAATAACTCCACAATATTATTTGCCTGCTCTAGTCTGTTCACAGAAGATctgaaaaagtattattaatatataattagcCATAGTTTAATTTCTTCAGAAAGCTTTTGGAGCTCaattatatcatatcatattaacATCTCAGGCATTGGAATTTCAGTCTTATGTGCCATGAAGCCAAGCTTGACGAGTTGTTAACTATAATACAGACCTGTGGGAAACAAGGTTTAGGTTTCCAGTCGCAAACTGTCAGTTGCAAAGTACAGACTACAGCACTGTATCTTAATATTAGGAAATGCAAGCTTGCACTACTCTATAAATGTAGTGGAGTTGGATTATTGCATCATGAACATCTTGAAATATATGTTCGACTCAGGTCTGCTGTGAAGTACTCTTTGTGTGGTGACTTTAGAAACTACCTTCAATACATATTTTGCACAGTGAAGGCTGagtaaagttttttattttattaaagtgcTCATTATTGAATTTTGACACAACACAACTTAAAGAGCCTAAATGAACTAAATGTACTTACAGTAGGTCATTGGGTTCCATGTAATAACATGATTCACAAATCTCCTAGGAACAGACGACGGAAATGCTTAGCCCTAAAATTAGCCTTCTTAACCTGGCACCCAGGGTCTCCAGTAACACCATCAGTCATGAGAAGCATGGGATGGTTTTAGTACCTATGGCTTTACTTGTGCAAGTATATGGGGTTTTAACTCACCTATACTTGGCTGTTGTGTGATGTGATATataaattttatgttttaccatgACATACAGTGACCAGGATTCTTCTTAAAATCATTTCATTTATGGGATATAATTTACAGATAACGCTCACAAATTCTGACCAGACCAGGCTTTAGCAAGATTACAGCGCAAGTAATATGTTTTTGGCCTGAGGCCACAATCTAGCATCCAGGTCAAATTATTAGTGTAAAGTTTTGTGCTTGTATATGAAGGGCACTGATCTGACCCTTTACTCGTCGTGCACTATTCTGAAACACTGTGGTTTTGTCCATGTGAACGACTATCAGCTTTTGATGATAATCATTACAATCACTTTCATGTTTTTATGTCGAATTGTACATAACACATAGCTAGCATATttacattttggatcattgttattttatgaAATTGTCCTAacaatattcaaaataaaagatttttttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47047 lncRNA downstream 6819 6543173 ~ 6546514 (-) False ndufaf8
TU47030 lncRNA downstream 185227 6366780 ~ 6368106 (-) False LOC103026268
TU47029 lncRNA downstream 192955 6359911 ~ 6360378 (-) True G34939
TU46866 lncRNA downstream 400472 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 500895 6049006 ~ 6052438 (-) False ablim1
TU47088 lncRNA upstream 117676 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 122448 6680351 ~ 6680909 (-) True G34988
TU47093 lncRNA upstream 130387 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA upstream 130438 6688341 ~ 6689610 (-) False LOC103030829
TU47099 lncRNA upstream 170958 6728861 ~ 6729154 (-) True G34997
XM_015608363.2 mRNA downstream 6751 6543144 ~ 6546582 (-) True ndufaf8
XM_022669016.1 mRNA downstream 6774 6543144 ~ 6546559 (-) False ndufaf8
XM_022669012.1 mRNA downstream 39749 6366684 ~ 6513584 (-) False LOC103026268
XM_007259297.3 mRNA downstream 76043 6366684 ~ 6477290 (-) True LOC103026268
XM_015608380.2 mRNA downstream 83350 6366684 ~ 6469983 (-) False LOC103026268
XM_007259305.3 mRNA upstream 9486 6567389 ~ 6578059 (-) True bicral
XM_007259306.3 mRNA upstream 9486 6567389 ~ 6577759 (-) False bicral
XM_007259313.3 mRNA upstream 130264 6688167 ~ 6696291 (-) True LOC103030829
XM_015608325.2 mRNA upstream 147165 6705068 ~ 6711220 (-) True LOC103045903
XM_007259315.3 mRNA upstream 153411 6711314 ~ 6715739 (-) True LOC103031455
TU47043 other downstream 11969 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 39632 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 613933 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 625179 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 1190848 5257882 ~ 5362485 (-) False tcf7l2
TU47076 other upstream 61777 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2366925 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2646667 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2868172 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2868933 9426836 ~ 9431164 (-) False rpl38

Expression Profile