RNA id: XM_022669060.1


Basic Information

Item Value
RNA id XM_022669060.1
length 4509
RNA type mRNA
GC content 0.45
exon number 20
gene id pald1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 8599182 ~ 8703597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGCAGATCtactgaatgaCTGCTAGTGGATTATGGGTACAACTGCCAGTGCTGCCCCCCCGACCACGCCTGAGAGTTTCCACGGCAACGGGATGACGGACAGCAGGCATTCCCTGGGCCATGCCTCCTTTCAGACAGTCAGCATCCACAACAGCAAGGCCAAGTCCATTATCACCAATAAGGTGGCACCAGTCGTTATCACTTATAACTGCAGGCAGGAGTTCCAGATTCATGATGACATGCCAAGGGCTCATTATAAAGTGGGGCAGATCTCCGACACCATGCCTGAGCACTACTTGGTGCAGGGCTCCTACTTCATGGTGCAGGACGTGTTTAGCAAGGCAGACGTCCTCAACACGACAGGGTCCTGCGGCGCCCCCAACTTCCGTCAGAGTAAAGGCAGCTACCCACTGTTCGGCATGGGTCAGCCCAGCCTGGCTGGCTTTAAACAGGTCCTGCAGAAGCTGCAGAGCCAAGGCCATGAGGAGGTGATTTTCTTCTGTGTGCGTGAGGAGCCGTTACTGTTTCTTCGCTTGGAGGAGAACTTTGTTCCCTACACCCCACGGAGGAAGGAAAACCTGCACGAAAATCTGCATGACTTGAGCAAGGACGTTCCAGTGGAGAACCTGGAGCTCAATATCAGAAAAGAGctgcatgATTTTGCCAGGCTGAATGAGAACGTGTTCTACGTCTACAATGACATTGAACATTTTAAAGACCAGCCTCAAAAAATCTCCATCTCCTGTGAAGAGGACATCCATGTCACTGAGGAAGTCTACAAGAGACCCCTTTTCACCATGCCTGCATACAGGTATTACCGATTGCCGCTACCAATGGAGGGAGCGCCAATGGAAGAGCAGTTTGATGCCTTTGTGAATATATTAAGGGagaacccctctctctctctgaatcggGACGCCTCCAAACCCCTTCCCGCTCTGCTCTTCAGCTGTCAGGTCGGTGTCGGACGCACTAATCTGGGGATGATTCTGGGCACGCTGGTGATGGAGAGGGTGACAGGAGCTCCACCCCTTCCTCAGTCCCCACCACCACCTTCACCAACTGATACACAAACTGAGGAAGCAGTGAAATCCGAACCAAATCCACAGTTCCAGATCATCCAGACCCTCATCAGCAAACTGCCCAACGGTCAGCAGATCGTACAGGAGGTGGACCGTGCGATTGAGCTGTGCTCTGAAATGCACGACATCAAAGAAGCCATTTTTGAGAACAAGAAGAAGCTGGAAGCCATTGGAGAAGATTACCAGTCTCAGggAAGCAGCACTAAACTGTACTTCCTccagagggcgctgcagagtcTGGAGCATTACGTCTACCTGATACTATTCAACACATATCTACACcaacagTATCCACTGGCCTTTGCTTTGAACTTCAGCCAGTGGCTGTGCTCGAATGCCTGGGTGTACCGCCTCCTGTCCTGCATGAACCAATCAGAACTCAGTGCACCTGCTGACCTCATCACTAAAGGAGCCAGAGTACTGGTTGCAGATGAATACTTGGCTCCTGATGTTTTGAGCACTATGAAGGAGATGAAGGTGCCGAATTTCAGGCGGGTTCCAAAGATGCCAGTGTACGGGATGGCCCAGCCCACGTCTGAGGCCACTGGAGTGGTGTTGGCATATCTGATGGATGAGAAAAGGAAACACCAGCATGTTCTGTGGGTGAACGTGCAGGAGGAACTGGTTGTGGAGGCTAATGGTCAGATGTTCTCTCCCAGAGAGCCTTCATGTCTGGATCAGTACATCTCCCTTCATAACGCCCAGACGCAGGACATAGAGAGGCTGGAGACGGGTCTGAAGGAGGAGATCCTGAAGGCTCAGAAGTGGTTAGAGGTGACTCTGGAGCAGGAGAAGCAGATGAAGATGTTCAAGAGCTGCCAGACTCTGCAGGAGATCTTTAACCAGCACAAGAGCTCCCACCAGGGGCTGGAGTACCAGCGCGTTCCACTGCCTGAATGCGCTGCCCCTACTGAACAGgaCCCTGACCACATGCTGGAGGCAATGAAGAGTGTATTAGCTGAAGATTCTCGAGCTGCGTTCGTGTTTAACTGTTCGAATGGGAAAGGCAGAAGCACCACCGCCATGACCATAGCAGCTCTAACACTCTGGCATTTTAATGGATTTCCTGAGTTTGGAGAGGATGAGATCGTCAGTGTTCCTGATGCCAAGTTCACAAAGGGGGAGTTCGAGGTGGTGATGAAGCTGGTCAGGATCCTCCCAGATGGTCACAGGATGAAGAAAGAGGTGGACATGGCTCTGGACTCTGTCAGTGAAACCATGACGCCAATGCATTACCACCTCAGAGAGATCATCATCAGCACCTACAGACAGATGAAGAACAGTAAGACTGAGCAGGGCAGCAGATCTTTGCTGCTGAAGAGTCTGCAGTATCTGGAGCGCTACATGTACCTGATTCTCTTCAACACCTACCTGCACTTGGAGAAGAAGGACTCCTGGCAGCGCTCCTTCAGCACCTGGATGCAGCAGgtgGCTGCACGGGCCGGAGTTTATGACCTGCTGAACCAGCTGGGCTTCTCTGAGTTTGAGAACGTGAAAGACTCAACCCTCGCTCGCCTCCGCTTCCGCTGGCAAGAACAGAGCAACCAGAACCTTCCATTCAGAGGAGAAttcatgtgagagagagagagagagagagcagctgcACTGTGACCTGTAGAGGAAAAATAACGTAATCTGAAGATGCTGTGCATTGATCTGATCACTGTGCGTTCAGACCCTGTTTAGTTTCAGTTCTCAGTGTTTTTAACTCCTTACTGTCTTTATTAGATCGTTTTTGTTAATGTTTGTCTTTTATAGCATGTCCATAAAACACACGTCCGTAGGGTAGAGTTCTAAAACAATCTGCTGCAGAGGATTACCTTATTTAACTCCAGTTATCAGTGTTTAAAACGATCTTTCAGATCAGATTTTCATAATTAAAATCCCTTTTTTTATCCTAAATGAAGTTTATCTTTTAGAAGGCTATACTAGCTAAAAAGCAATGGAAGTTAATATCCAATCAGTAAACATTGTGCTAAGTGAACCCTACTTGCCACAATCGGTGTCCGGTTAGCTTCTCGTTAGCTTAGTAGCTCCATTgctaaaactgtaaataacctttaaaatgagaaaacacCAAACTTAGACTTTGACTTAGCTGAAATACTACAGTTGAGACGAAAGCAAGAAACTGTAAATCTGATTTATTGTGAAGGAATTTAGTGAAGGCATTATTTAGAGCTTGTTTTCAAGTTGCTCACTCAGTTAGTATTAGCATTTGTCACTCAAACTCATGGAGCATCATGAAAGTGCTAAACTGAGTCATGTTTCcataatttcttttaaaatgaaattctcCATATTTTTAAGGTGTTGATGACTTTatttatcctgctgaaaaacaaACTGCCAGCTCAAACTGGTTAAGCTGGGTTTAGTAGCTTACCTTATctctgaggttttttttttttttttttttttttttttttttttttttttaagcatttggtATTTTTGATGGCTTAGCTGGTCTACAAACATGATCAGCATGACCAAGTCTATGATTGGGATGTTTGTCATACTGGCGATAGGGTTGAGAACAGGACAAGTCATCTAACGATGtgattttatcacaatatgataaCATTAAATCATGATATTGGGATATATCACAAAGACGAtgttactaaagaggataaaatacacctaaaaattattggtgtcagttttacagagTTTAACAGctaatattcttcaccacaagtctgccctattcatttgattagcgccaccatgtggagcaATAAGGCAATAGCTGGAACTTGGTGTTCCAGTACCTAGGTTTCAatacaaatattgatatttgacgcATCCTATTAATAAATTGCAATACACCCCCCTTGTTTACCATCTTTGTGATGTTGGTCATTCTGGCCAATCAGCTTGTTCTTACTGGTCACCTTGTTCTTCCTGCATGGTCttgtttggtctgtttttttctaGATAACCAGCTACCACCTTGATCATCGAATGCCAGCATAAAcgaaaaaatctaaatcttaaAACCAGCACTGCCAGCACCAGCTGTTCCTGAgttgcatttttcagcaggaataTCCACAAGAATTGCAGtattatgttaatatttgtAAACCTCCACATTCATggtgtgttaaagtgttaaatgtgagtgtttttctctgtttccttCCCTGTTTCACAGATAGCATGTGCTGGATGTGTCTTTTAATGCACCTACACATGCGTTTTAGTccagtttttaacatttatgttttagcTTGTATAGTTTATTAATCCTGATTCTCACtcctgtgcttttttttaaatattagtgaTTGTTATTGTTAATATCGGAGAATAGATCCTGAAGAAAccactgtttttgttctgttttgtaaaGGAGCGTACAGTATTTTCCAGTGAGATTTTTTGCACTCTCCATTAAATAAGATTTGTAAACTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47614 lncRNA upstream 58921 8561903 ~ 8562959 (+) False G35362
TU47613 lncRNA upstream 59208 8560680 ~ 8562672 (+) True G35362
TU47615 lncRNA upstream 60228 8560361 ~ 8561652 (+) False G35362
TU47612 lncRNA upstream 61531 8557236 ~ 8560349 (+) True G35361
TU47610 lncRNA upstream 69046 8552410 ~ 8552834 (+) True G35359
TU47647 lncRNA downstream 87525 8791122 ~ 8851350 (+) False LOC103024481
TU47649 lncRNA downstream 87525 8791122 ~ 8851183 (+) False LOC103024481
TU47667 lncRNA downstream 197588 8901185 ~ 8901451 (+) True G35400
TU47751 lncRNA downstream 325871 9029468 ~ 9030561 (+) False G35454
TU47753 lncRNA downstream 325871 9029468 ~ 9033192 (+) True G35454
XM_007259650.3 mRNA upstream 134429 8482871 ~ 8487451 (+) True LOC103030936
XM_022669053.1 mRNA upstream 148918 8442132 ~ 8472962 (+) True LOC103037241
XM_022669052.1 mRNA upstream 183015 8404717 ~ 8438865 (+) True fasn
XM_022669047.1 mRNA upstream 220237 8379572 ~ 8401643 (+) True ccdc57
XM_022669062.1 mRNA downstream 15757 8719354 ~ 8851392 (+) True LOC103024481
XM_007235442.2 mRNA downstream 290846 8994443 ~ 9029155 (+) True LOC103023541
XM_022669065.1 mRNA downstream 473641 9177238 ~ 9207684 (+) True LOC103022911
XM_022669063.1 mRNA downstream 473676 9177273 ~ 9207684 (+) False LOC103022911
XM_022669064.1 mRNA downstream 481702 9185299 ~ 9207684 (+) False LOC103022911
TU47135 other upstream 1717883 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 1890456 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 1958293 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 1960629 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 4443797 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1769777 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1769777 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 2290764 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 2290764 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 3097861 11801458 ~ 11802204 (+) True G35903

Expression Profile