RNA id: XM_022669064.1


Basic Information

Item Value
RNA id XM_022669064.1
length 5869
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC103022911
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 9177238 ~ 9207684 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCGTTCATCCCAGctCTTCTGTCTTCCTGGAGTGAGGAGTTGGGTCAGCTGCTCCTGCTGAGGCACCAGAGGAACAGACAGAGTGACCCTACATCAGGAAAACCCCCCATACAgcccagcatgaccagcatgaaACCAGCACTTAACCACGGTGACGGCTCTTATCCATACGACCCTGTTCCGTGGCAGCCGAGCGCCAACCAGGCACCTGGAGCTGTCTCTGTGGTCACTACTGTCTGGGGAGTGACTAACACCTCACAGAGTCATgtgttgGGGAACCCCATGGGGAATCCCAGCCCCCATATGAACCCTGTCGGTAACCCAATGGCCAGTGGCATGGCTGGTCCTATGAACCCAGGGGCTTTTCCTGGGCCGCAGCAGCAGTTCTCCAAGGCTGGGGGCAGTGAGGGGTACATGCAGCAGGGCATTTATGGGAGAGCCAGTTACCCCGGTGCTGGAGGATACGGGGGCAGTTATGGTGGAGGTCCTAATGGTATGACTCCAAGCTCCCGCCCTCATTCTGATTTCAGCCAAccagctgctgctgccgccgctgctgctgttgctgctgcagctgccaCAGCAACAGCCACTGCCACAGCAACAGTCGCCGCTCTGCAGGAGACTCAGAATAAAGACATGAGTCAGTACGGACCGATGTGCTCTTCATTCCAAATGGGGACCCAGCCATACGGGGACCACTTCATGAGCCCTGCTGGCCCCCGAGGTCCCTCAGGCATGCAGGGAGGTATTGGTAGCCCTCCAATGGGTATGGGGCAACCCCGGGGACAGATGGGACAAATGGGACCTTATGGAGGACCTGGACAGAGGATGGGTTACAGTGGCAACCGTCCACCAAATGTACCCATGCAAGGCATGAAGAGGCCCTACCCTGGAGAGGTCAGTTATGCGGGGCAGCAATGTGGACCAAGTGGGCAGTTTCCTCCCCAGCAGGGGCCATACCCCACACTAAACTCCTCCAGACCCCTCCCGTCCCCTAATTACCCCAACCAGAGGCTTCCTCAGGGTCAAAACCCCGGGCAGTACCCTCCCAGCGGCCCCGGCATGGGGCACTTCTATAAGCAGGAGCCTTTAAACTCTCAAAGCACCGTTAATAACTTCAGCGGAAACTTCCAGTACAGCCAGGGTAATATGAGTGGGCCTCCGAGGCCTATGGGCAGCTACCCTCACTCGCCAGTGCCCGGTAACCCCACCCCCCCAATGACTCCTGGAAATAACATTCCTCCGTATCTGTCACCTGGTCACGATGTTAAACCTCACTTCCCACCGGACATCAAACCCAGCATGAGCTCTCTGCCGCCTCCTAgtagCTGCGGAGAGGAGCTGAGGTTGACCTTCCCAGTGCGTGACGGGGTGGTGCTGGAGCCATTCAGACTGGAACACAACCTCGCCGTCAGTAACCACATCTTCCACCTGCGGCCATCTGTTCACCAAACACTCATGTGGAGatctGACCTAGAGCTGCAGTTTAAGTGTTATCATCATGAGGACCGTCAGATGAACACTAACTGGCCGGCCTCGGTGCAGGTGAGCGTGAATGCCACGCCCCTCACCATCGAAAGAGGAGACAGCAAGACATGCCATAAACCCCTGCTCCTCAAACACGTGTGCCAGCCTGGACGAAATACCATCCAGATCACCGTCACAGCCTGCTGCTGCTCTCACCTGTTTGTGCTGCAGCTGGTGCACAGGCCGTCTGTGCGCTCGGTCCTGCAGGGCTTACTGAAGAAACGGCTGCTGCCCGCTGAACACTGCATCAATAAAGTGAAGAGGAATTTCAGCAGTGCAGCTGTCTCTGCTGGGATAAACTCAGAAGATGGTGTGGAGCAGACAGCCATCAGAGTCTCTCTGAAATGTCCAATCACATTCCGGAGGATTCAGCTACCAGCGCGAGGACACGACTGCAAACACGTACAGTGTTTCGATTTGGAATCATATCTACAGCTGAACTGCGAGAGAGGAACGTGGAAATGTCCTGTGTGCAATAAAACTGCTCTCTTAGAGGGGCTGGAAGTCGACCAGTATATGTGGGGTATTTTGAACGCCGTCCAGAATTTGGATTTCGAGGAGGTGACCATCGATGCATCCTGTAGCTGGCGGCCAGTGCCAATCAAAGCGGAGGGTCATATAAAAGAGGATCCGGACGGGCCGCTGGTTAAACGGCTTAAAATAATGAGTCCCAGTCAGATGGTTCTACCAAACGTCATGGACATGATTGCACAGCTTGGGCCCGGAGCAAACCCACACCCCATGCAGAACCCCAGCGCCCTCCCTCAGCACAGCAGCAACAGCCACGAGTACCACAGCCGAGTTAACAGTTACCAAGGCCCTGGCAACTTCGACTACCCCCATGGCAGCGCACCAGAGTTAATGCAGGGGTCTCAGCTGTCCCACCCACCCCCAGACCCTCCATGCAGTGGCCTTCTGCCAGCAGATAAACCACTCACGCACTGCCCCGGCGACATGGTGTCTCGTCCAATCAACTCAGATCATTCCCAGAATCCATTGCAGCACAGTTTACACGGGCCTCCAAACCCCAGCAGCCAATCAGGGCAGCATAGTAGTCCCTGCCAGCCTTCCAGGCCACCGCCAAACCAGCAAAACCCCGCCCCCAGTAGCCATATGCACCCACCGGACTTGACCTTTAACCCCACAAACAGCCTGGAGGGTCCACCAGGAATCTCTTCAGACATGCCGGAACCTTCTTTAGATCTTCTTCCAGATTTAACAAACCCAGATGACCTGCTGACCTTCTTGGACCCACCAGACCTGCCCAGCGGCAGCAGTGATGAACTGCTTTCACTCTTCGGGAATAactgagtgaaagagaaagagcgagaaagaaaaaacagtgaTGCACTCCCTGTGCCCTTATCCTCCTGTACAAACTCCAGGCCTCTGAGCGCCACCTTCAGTGCAGCTATGCCCAGCTTACTACGTTGCACAGAAGTCTGACTGATGAATTTTAGGaaaagcatttttcttttttttttaattctgggattcattttgtttttaataagaaacacacaaacacaaatccgCCTCTTCTGGCCAGTATAGGTCCTCCATTCCCAGTTATGCTGCTGAAACCAAGCCAACCCAAGCCAAGACCAGCACAGGGTTCGTTTCTTCATCTTTTTCAGACCAGTAGCACTGTTTGGGTCTCCAGGACGTTTCTCGACAAGTTCAAGAGAAGCTCCAGACTCCACCAAAACACTCCACAAGCAGCCTCTCCTCACGTGTCTTATTTCTGTAATGAAGAACCTCAGAATTTAGTGAACAACTACAGGGTTTTATACACTCATCATCTGAGGAATAGTTGAGTAGAGGTATCGGATTGCAGTGCTACAGCAGCTAgtcagaaggaagataaagattAGTAGGAACAAATAGATAATTGAACCTTTAGGCTAATATggacaatatttattgagctactcATACAGCATTGGGTTGTAGAGGttgttcatgattttttttttttgtgataaacaATCACAAATGCAATTCCTGTAAATTTTGCAGCAGAAATGGAGTGGCGGGATAGCACGTCCAATagtagcatcccacacatttccATTTGCGGATAGCTGGCCATGGAAtagcatctgtgtcttcaaggcaagttCTTAAGAAGATGTTCAGAAAAGGTAGAAAAGGCAGGGCCTCATGATGGTTTGTTGTATTGTCTGTAAAGAAGACCAAACGTGATCCTGCATCGTAGGAAATTGTACACCATGCCAAGACACCAGGCCTTTTGAACATGTGACGCATGACAGCAGACCGTCATTGATCCTGGGGATGTGCAAGGTGGTTTTCACAAGCTGATTTTCAATGAAGACATTCtgtttttgtcttggtggaggtGAAAAATGactttacacactgcttctgtatgtgtagcttaaTAAATATTGCCCTCACCAGACTAAATTGATTGTTTcaggtaacctttatcttccttccaaAAAGCACTCCAATCCCACACTGTTATTTGATGAAGAACATACGATTCCTGTAGACAGGACAGAAGGTCTAACAGCCAGATCCAGTCGGAgagcaaaaaaaacaggagtAAGAACGACAGTTTGTTTTAAGTAAACTGTATGtctaaatgtttttggacaACCCTACTAAACACATTTGAAGCACTATACTGGGGAACCTGCTACCATGCAATTTTACagtatcaattttttttttatcgttacATCGTTTTTAgcattaattttatataatatcgTATAGATCCATCGTTGGACAAAATCACTACGTTCAAATTGGTGTCCAAACATTCAACTGTTATAAATCATAAATGATAAGTTTTGTGTACTGTTTCATGTATCAATGTTTGAGTCAGTACCTAGCAGATTACTACAATTCCAAATACAGGGCATGGACAAAATAATTGAAACGCCACATCAAATACTTATTGATCATATTATTAGAAACAAAAGCCCTGTCTGAGTCATTGCAATGCCGATATAATATCTGGCCATGTGGTCAGTGGTCATGTGGTCTGAATTGACCAGTAATGAATAAGGTAGAGGGGATTGATAAACTGTGTAACAGATGGAgctttaagtaattttttttcagacgtaaaaaaaaacaaatacagttcTTAACGTAGCGGAACCTTCACACAAACTCTGATGCATTTTTGCCTTCAGTTCTCTGTAAATGGGACTAATCAAACCACATTTCTCATGAATCTCCATtcttttcaatttatttatctTCTTTCCACTCCTTTCCTGCTCTTTAATTTCTTCTTCCATGCGAGTGGTGCTCTTCAGCATGAGAAAAATTCATGTGGAACATGAACTGATGATAATGCTCCTGGACGAACTCTTTAAAACAGCTAGATACAGTGTCTGTAATGTTCATTATTCCCCAGGCTTTCAGCTCTGCTCtggaatatatttattaaaactaggGTTATCAATGCTTAAGCCCAGCCCCTGCCCAACATGAAGATTTTTTGTCTGGCTGAATGACTAAAACAAAAGCTCCAACATGGACAAAATTGTGACAGAGAAGACATCCCCCAGCGTGTGGTGTCCAGCTGTAACACACTGGATCCAGTCTCAGTTCAAACTTCCAGCTCCGACCCAGATAGTGAGTTTTGGGGCACTTACTCATGTATTAGTTCGTACATAAACTATTGCAGCACCAAAACACATTCATGGCATTActcacagaaataaaataaaggagcTCGGTCCAGGTGGTTTCCGTgatacagcacagcacaacacataCTGGTTCTCTACACTATACACTCCCCAgaccatttaaatggtcatcccccattgtgagcatgtgtgcaatACCAAGCACTTCCTGAGGTTTTTATAATCAGCTAATTAAGTTCTAAAGGCAAACAtttagtacataaaactccacatgttcattcatagttttgatgccttcagtgagaatctacaatgtaaataatcatgaaaataaagaaaacgcattgaatgagaaggtgtgtccaaacttttggcctgtactgtatatcaatgttataaatacaatttatattCAATTCTGAGATACAatttagatgtttctaataatcGTCCAGTTAGTAGAAATACAGAGTTTAATGTGgtgtttctcttattttgtccAGCGCTGTATGTCCCCAATGCTAAAAACTGATCAAAGGGCTTTTAAGTGTGAATAAAGTTGTTTAAATTGTTTGGATTTTAAACTCTAGAATCTGCTAAATGTGTTCAGCTCTGTCAGCGGCTGCAGTCCTGTTTCATGATGTATTTTATGAATTTTAAACCTGAACTCTCAAAATGTCAATATGTGAAGTTATAGAAGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47787 lncRNA upstream 37134 9146371 ~ 9148165 (+) True G35479
TU47753 lncRNA upstream 152107 9029468 ~ 9033192 (+) True G35454
TU47751 lncRNA upstream 154738 9029468 ~ 9030561 (+) False G35454
TU47667 lncRNA upstream 283848 8901185 ~ 8901451 (+) True G35400
TU47649 lncRNA upstream 334116 8791122 ~ 8851183 (+) False LOC103024481
TU47807 lncRNA downstream 2121 9209805 ~ 9210197 (+) True G35495
TU47847 lncRNA downstream 163886 9371570 ~ 9406210 (+) True G35533
TU47859 lncRNA downstream 217291 9424975 ~ 9429378 (+) True G35539
TU47880 lncRNA downstream 246185 9453869 ~ 9454168 (+) True G35552
TU47882 lncRNA downstream 246798 9454482 ~ 9454817 (+) True G35554
XM_007235442.2 mRNA upstream 156144 8994443 ~ 9029155 (+) True LOC103023541
XM_022669062.1 mRNA upstream 333907 8719354 ~ 8851392 (+) True LOC103024481
XM_022669058.1 mRNA upstream 481702 8599182 ~ 8703597 (+) True pald1
XM_022669066.1 mRNA downstream 13047 9220731 ~ 9267596 (+) True LOC103043335
XM_022669431.1 mRNA downstream 621801 9829485 ~ 10373341 (+) True LOC103040920
XM_022669074.1 mRNA downstream 1177328 10385012 ~ 10424245 (+) True cdc42ep4
XM_007240714.3 mRNA downstream 1229639 10437323 ~ 10441938 (+) True LOC103039374
XM_007240718.3 mRNA downstream 1268706 10476390 ~ 10485798 (+) True trim65
TU47135 other upstream 2281302 6902417 ~ 6903997 (+) True G35021
TU47021 other upstream 2453875 6730954 ~ 6731424 (+) True G34931
XR_002649861.1 other upstream 2521712 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other upstream 2524048 6619671 ~ 6661251 (+) False LOC103029551
TU46176 other upstream 5007216 4171051 ~ 4178083 (+) False G34309
TU48089 other downstream 1265690 10473374 ~ 10474792 (+) False G35744
TU48092 other downstream 1265690 10473374 ~ 10475783 (+) False G35744
TU48150 other downstream 1786677 10994361 ~ 11001539 (+) False dock1
TU48151 other downstream 1786677 10994361 ~ 11001805 (+) False dock1
TU48301 other downstream 2593774 11801458 ~ 11802204 (+) True G35903

Expression Profile