RNA id: XM_022669075.1


Basic Information

Item Value
RNA id XM_022669075.1
length 1368
RNA type mRNA
GC content 0.51
exon number 9
gene id mrpl38
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10467821 ~ 10475877 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCACACGCATGCGCAGTACGTACGAGTTTATGCATGCTCCAACATGGCGCTGCAGAGGACAGCGGGGCAGCTGTGGAGGATCGGGGCGGATTCGGGACTCAAAAGCTGCGCCAGACTGTTCAGAACAGCAGCCGTATCCTGTCGCCGGACTGCCCCGCTGGGACCGATGCCAAATGAAGATATAGACTGGCAGAACCTGGAGGCTCTGGAGAAATACCGCAGCTACACGCGCTACATCACTGCGGCGGAGAAGGCCAGAAATAAAGAGGTGTGGTGGAAAACCTACAGACAGTATGTGGACCAGCAGCCAGACCCAGaGTTTGGGCTGGTGGACATCGGGCTTCCTTACTGTCGGCCCTCGAGGGTAAAGGAAGCTCGGGAAAGGAGGAAGGTGATGAGAGAAAACCGGAAGAACCCTGAGCTGGAGAGAGCCACTCGTCTTCGCTCCTttcgCATTTCGTTGGACAAAGTAAAGACAGAGTGGGAGAAAACTAACGGACCTTATCACATCCAGAGGCTGGCGGAGCATTACGGAATCTACCGGGACCTCTTTCCTATGGCCTACTTTGTTCCGAGGGTCATGCTGAGAGTGGGATATGAAGGTGATGGTAGTGCTCTGGTGCATTACGGCAATCATTTATCTCCCACTCAAGCATCAGTAGCACCTCACATTAGCTTTGAGGCAGAAGAAGATTCTCTCTGGACTTTGCTTCTAACAAGCCCAGATGAGCATTTACACGATGGGGAGCAGGAGTACGTTCACTGGCTGGTTGGGAATATCCCTGGTGGTGCCGTTCTCTCCGGGCAGGAAATTTGCCCGTACATCGCTCCGTTCCCTGCTAAAGGCACCGGCTTCCAAAGATATGTCTTCATCCTTTTCAAACAGGATGTTCATGTGGACTTTAGTAGTGATGTCAGACCATCTCCCTGccacAGTCTGAAGCAGCGAAGTTTTAAGACGGTGGATTTCTACAGGAAATATGAGGATCTGATCACTCCTGCTGGACTGGCGTTCTTTCAGAGTCAGTGGGACGAATCGGTCACTAGCACCTTTCATACTCTGCTCAATATGAGAGAGCCAGTGTTTGAATATGAGAGACCCCCAGTGTACCACCCTCCCCAGCAGAAATACCCTCACGGACAACCTCTCCGATACATGGACCGCTACAGAGACGGAAAGGAGCACACCTATGGGATCTACTAATCCAGAAACACTCTCGCACTGTCTATTCACAACTGTGTAACcttttgtaataaaaacaaacatgctTCAGTTCTGTTCTCTGCGTAATAGTTTTATTCTGCCAGCATCCACCAGGTCCTGTGAATGACTGAAGTCAATAAAAGCCATTTATCTTtccattta

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17419 MRPL38; large subunit ribosomal protein L38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48130 lncRNA downstream 1599 10465055 ~ 10466222 (-) True LOC111192368
XR_002649870.1 lncRNA downstream 1599 10465101 ~ 10466222 (-) False LOC111192368
TU48127 lncRNA downstream 4821 10461604 ~ 10463000 (-) False G35769
TU48126 lncRNA downstream 5382 10461604 ~ 10462439 (-) True G35769
TU48122 lncRNA downstream 26248 10439531 ~ 10441573 (-) True G35767
TU48136 lncRNA upstream 10110 10485987 ~ 10486376 (-) True G35777
TU48237 lncRNA upstream 466631 10942508 ~ 10967368 (-) True G35855
TU48233 lncRNA upstream 469786 10945663 ~ 11004322 (-) True LOC111192403
TU48243 lncRNA upstream 508650 10984527 ~ 11069095 (-) True G35857
TU48232 lncRNA upstream 517876 10993753 ~ 11001082 (-) True G35850
XM_015603490.2 mRNA downstream 17536 10443259 ~ 10450285 (-) True LOC103039991
XM_022669073.1 mRNA downstream 1036623 9426902 ~ 9431198 (-) False rpl38
XM_022669069.1 mRNA downstream 1045110 9314584 ~ 9422711 (-) True LOC103043647
XM_022669076.1 mRNA upstream 11190 10487067 ~ 10494186 (-) True wbp2
XM_022669080.1 mRNA upstream 351533 10827410 ~ 10880834 (-) True fam196a
XM_022669077.1 mRNA upstream 351533 10827410 ~ 10859113 (-) False fam196a
XM_022669081.1 mRNA upstream 599584 11075461 ~ 11083182 (-) False clrn3
XM_022669098.1 mRNA upstream 1421176 11897053 ~ 12038582 (-) False ebf3
trnap-cgg_1 other downstream 1014264 9453486 ~ 9453557 (-) True trnap-cgg_1
TU47869 other downstream 1036593 9426836 ~ 9431228 (-) True rpl38
TU47866 other downstream 1036657 9426075 ~ 9431164 (-) False rpl38
TU47867 other downstream 1036657 9426836 ~ 9431164 (-) False rpl38
TU47824 other downstream 1261910 9204570 ~ 9205911 (-) True G35512
TU48252 other upstream 577782 11053659 ~ 11077913 (-) False clrn3
TU48251 other upstream 597061 11072938 ~ 11077913 (-) True clrn3
TU48268 other upstream 605792 11081669 ~ 11083146 (-) False clrn3
TU48386 other upstream 1591669 12067546 ~ 12072403 (-) False LOC103036331
trnaq-cug_2 other upstream 2191959 12667836 ~ 12667907 (-) True trnaq-cug_2

Expression Profile