RNA id: XM_022669120.1


Basic Information

Item Value
RNA id XM_022669120.1
length 3728
RNA type mRNA
GC content 0.52
exon number 24
gene id jakmip3
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12603957 ~ 12664928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctgtgtcagcCTCCCTCCCTCGCCCTCTAAAACTGCTGCTCCTCTAGCAGCAGAGCTCTTATCCATCCTTCCCATCCTCCTGtttttccctctgctgctgtttctgatgAATCATCCCCGGTTGCTTCTCCACTGAAGCCGGATTCTAGTTTTTTTCTTCCCGTCCTCCATCGTTCCAGGGATGACATGAGATGAGAGGAGTACTGGAGGGGAGATGCTCAGTCGTCTACATGAAACTCTGGGCATGACAGCACATCCGTTCTCGTTTCAGAGCGTGTGCCGCGACTCACACAGCATGACGGAGGATCCGGCGGCCGCCTGGCCGCAACACGCAGAAAACTGAAGGAGCAGCAGCAACataaagcagaagaagaagaagaagaagaagaagaggaggaggaggaagaagaagcacAGCACAATCCTGGATCATGCACTTATGGTTAATTGGGAAGATGTAGCTGGACACTGAGCGAAAGAAAACCGTGATCGTTCACAAGCTCAGGTCATTCCTGGCAAGGGCGTGGTCCACAGAGCTCCACCCACCATGTCTAAGAAGACACCCAGTGGGCGGACAAAAGGGGCTGATGCCATGGCAGCCCTGCAGGCAGCCAATGAGGAGCTGAGGGCCAAACTCACGGACATCCAAATTGAACTGCAGCAGGAGAAGAACAAGGTCAGTAAGCTGGAGAGGGAGAAGTCGCAGGAGGTCCGGCACGAGCAGCACAAGTCTGCGGTGGTGGTGACCGAGCTGAAGGCCAAGCTGCACGAGGAGAAAGTGCGTGAGCTCCACGGCGTCCGGGAGACTCTGCTGCGGCAGCATGAGTCCGAACTGCTGCGGGTCATCAAGATCAAAGACGGAGAGATCCAGAGGCTGCAGGCCCTCGTCAACGCGCTCCGAGACGGATCAGCAGACAAGGTAAAAACGGCGCTGATGGCGGAGGCTCGTGAGGAGGCGCGGCGGGGTTTTGATTTGGAGCGGACGCGGCTGCAGCAGGAGATATCTGAGCTGAAGGGGGTGAAGCGGCAGATGGAGGAGGCGCTGAACGTGGCCGTTCAGGCGGATAAGACCAAAGCGGCGGAGATCCGGAGCGTTTACCACCTCCACCAGGAGGAGATCGGACGCATCAAGAAGGAGTGTGAGAGGGAGATCCGCAGACTGATGGATGAGATAAAGGTTAAAGAGCGCGCTGTGATTGGTCTGGAGAGAGAGTTGGGGGTGCAGGCGGGACATGCGCAgcggctgcagcagcagaagcaggccGTAACCGAACAGCTGAATCTGCTCAGCCCCAAGAGAGAGAATCCCAATTCAGCCGGTGCAGGAGACACAGCAGAGAGCGCAGCTAACACTCAGTTGGACGAGAAGGACGCTCGCCGTTTCCAGCTGAAAATCGCTGAGCTGAGCTCCATCATTCGCAAGCTGGAGGACCGCAACGCTCTGCTCTCGGAGGAACGCAACGAGCTGTTAAAGCGGCTCCGCGAGGCCGAGAGTCAGTATAAGCCTCTCCTGGATAAGAACAGACGTCTGAGTCGAAAGAATGAAGAACTCGCTCACGCTTTCAGACGCATGGAGAACAAACTACGCTTCGTCACGCAGGAGAACATCGAGATGaGGGAGAAGGTGGGGACGCTGCGCAGGCCGAGCTCTCTGAATGATCTGGATCAGAgccaggaggagagagagatcgaGTTCCTGAGGCTGCAGGTCCTCGAACAGCAGAACATCATCGACGATCTGTCCAAGGCGTTTGAAACAGCTGGATACGTGAAGAGTGTGATAGAGAGGGACATGCTGCTGAGGTACAGGAGGCAAGACCCCATCCGCAGGAGGAGAAGCTTCAAGGCTTGTAAGCCGGTGGTTGAGACGTTTTATGGTTATGATGAAGAAGGCTCTATAGACTCAGATGGCTCATCCATATCCTACCACACAGACCGAACGCCCTGCACACCAGACGATGATCTAGAGGAGggaatGCTGAAAGAAGAGACGGAGCTGAGGTTTCGTCAGCTGACGATGGAGTACCAGGCTCTGCAGCGTGCCTACGCTCTGCTTCAGGAACAGGTCGGAGGAACCTTCGATGCTGAAAAAGAAGTCAAgACCCGAGAGCAGTTACAGTTGGAACTGAATCGTTACCAGACCAGAATAGCGGATCTGGAGCGTGTGCTGAGTCAGCAAGGACAGGATGTGAAGTGGATAGAAGACAAGCAGGCCTTATACCAGCGGAATCAGGAACTAGTGGAGAAACTAAAACACATGGAGACGGAGGAGGTTCGCTTAAAACTGGAGATTCAGGACGCAAAAGACCAAAACGAGCTGCTGGAGTTTCGCATTTTGGAGCTGGAAGAAAGAGAACGAAGATCTCCAGGCATGAACTTCCAGAATATCCACTTTATAGAGGGCATGAGCCCCCTGCAGGTGTACTGTGAAGCAGAGGGTGTCACCGACATCATCATCACAGACCTGATGAAAAAGCTGGACATTCTGGGGGATAACGCCAATCTCAGCAATGAGGAGCAGGTGGCCATCATTCACGCCAGGACAGTGCTGACTCTGTCAGAAAAGTGGCTGGAGCAAGTTGAGGTGACCAAATCGGCCATACAGCAGAAAATGATGGACATTGAGAGCGAGAAGGAGCTCTTCAGTAAACAGAAGGGATATCTGGATGAAGAGCTGGACTACAGGAAACAGTCGATGGATCAGGCCAATAAGcgtaTCCTGGAGCTGGAGGCGATGTTGTTTGATGCACTGCAGCAGGAGGAGGCGGGTGCTAAGGTGTCCAATCTGCTCTCTGAGGAGGATCGTGATTCGCTGAGGCGAGCCGTGGACCAGTGGAAGAGGCAGGTCCTCAGCGAATTGCGGGAGAGAGATTCTCAGATACtcagagagaggatggagatgCTACAGCACTCACAACAGAGAGTAAAAGAGCTGGAAGAATGGATCGAAGCACAGAAACGACAGATAAAGGAGTTAGAAGAaaagcCTTCATTCTTTGGTCCTAACTCTTCCAACACACCGGAGATTtCGACAGGTTTCCAGACTGTTTTCTGCCTTCTGTAAGAGAGGAGAACAGAGGAGAGGACAGGTCTGAGATCAGCTCGGAGGGATTTCAGAAGAAGGCCAGTGATCTTCTGCTGTTCTCACAGCCTCAACTCTCAACTCTAGCTTCTCCTCGGGACCTAAAGCTACGGGAttatggtgctctctctctctctctctctctctctctctctctgtctgtctctctgtctctctgactgtctctctctctctccagtggACTAAACTGTTTTTATCCTGCTGATCTGAACTTTGCTCCATGTGACCTCTTCTTGCGTGTGGATTTTAAGGAGTCTTAAATTGAGGCGCTGTCTCTCTTTTCCCTGCTAAGCAGGTGGTGCTGGACGCTGCTTCCCTTTGGAAGCCTTGTTGAACGAGAGATGTTACGACGTTACGGTGAAACACACCCCCCTCAGTCCCCTCACTGTTTACACTCACTCTGCTCTGGTGATCCATCAGTGCACCCCCTGCCTGGTGAAGCCAGAAACCCTCTTCCGGTACTctcttagacacacacacacacatgaagcaTAACTAATGGAACAGAAAGCCAAAACCCTCGGGTTATGATATATTTGATTTttgtaatgtaaaaagaaaaacatatttcaaattatttcaaataaatTTCTCAACAGAGAACTGCAAACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48456 lncRNA upstream 3443 12586898 ~ 12602796 (+) True G35984
TU48427 lncRNA upstream 30791 12573915 ~ 12575448 (+) True G35974
TU48426 lncRNA upstream 33894 12570113 ~ 12572345 (+) True G35973
TU48430 lncRNA upstream 36659 12569178 ~ 12569580 (+) True G35977
TU48397 lncRNA upstream 39298 12548751 ~ 12566941 (+) False bnip3
TU48463 lncRNA downstream 4994 12669922 ~ 12670148 (+) True G35990
TU48464 lncRNA downstream 13319 12678247 ~ 12678497 (+) True G35991
TU48425 lncRNA downstream 29902 12694830 ~ 12695616 (+) True G35972
TU48465 lncRNA downstream 32021 12696949 ~ 12697208 (+) True G35992
TU48480 lncRNA downstream 108060 12772988 ~ 12794204 (+) True G36004
XM_022669106.1 mRNA upstream 41744 12551759 ~ 12564495 (+) False bnip3
XM_022669102.1 mRNA upstream 511508 12073363 ~ 12094731 (+) False glrx3
XM_022669103.1 mRNA upstream 511508 12073363 ~ 12094731 (+) True glrx3
XM_022669082.1 mRNA upstream 1388867 11184890 ~ 11217372 (+) True ptpre
XM_015608531.2 mRNA upstream 1563346 11040698 ~ 11042893 (+) True foxi2
XM_022669122.1 mRNA downstream 6617 12671545 ~ 12692068 (+) True dpysl4
XM_022669121.1 mRNA downstream 9055 12673983 ~ 12692068 (+) False dpysl4
XM_007248749.3 mRNA downstream 39410 12704338 ~ 12710368 (+) True LOC103039392
XM_022669128.1 mRNA downstream 52725 12717653 ~ 12831319 (+) False LOC103024023
XM_022669124.1 mRNA downstream 52725 12717653 ~ 12831319 (+) False LOC103024023
TU48402 other upstream 40268 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 235277 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 804035 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 1604434 10994361 ~ 11001805 (+) False dock1
TU48150 other upstream 1604700 10994361 ~ 11001539 (+) False dock1
TU48468 other downstream 37377 12702305 ~ 12703056 (+) True G35995
TU48945 other downstream 1798209 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 2124452 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2767903 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 4335454 17000382 ~ 17018884 (+) False sun1

Expression Profile