RNA id: XM_022669124.1


Basic Information

Item Value
RNA id XM_022669124.1
length 2862
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC103024023
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12717653 ~ 12831319 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGGTGGCAGTGCGTGGGCCCGCGTGGCTGCGGTGTGCGGTGAGTGTGCGCGTgcatgtgtgagtgagagatcCCCGTGTATAAAAGGCGCAGCGCTGCCTCCGCTCGCGCTCACTGTCCGCCGCCGTGCAGCAacagcatcatcagcatcatctcTCAGTCTGAGCCTCTCTACccatccctctatctctctatctgtctctcagcGCGCGCCTGGGATCCTCCTGTCTCTGAAACTCCTGTCCATGGTTCTGACCGAAGCTACCAACATGTCTCGAGCCGACGAGGTGCATCGTATAACGGAGAACGTCTACAAGTCCATCATGGAGCAGTTCAACCCCTGCTTGAGGAACTTCGTGGCCATGGGAAAGACCTATGAGAAGGCCCTGTCCAGTGTGACATTTGCAGCAAAAGGCTACTTCGACGCTCTGGTGAGGATGGGCGAACTGGCCAGCGAGAGTCACGGCTCTAAAGACCTTGggGACGTACTCTTCCAGATGGCCGAGGTCCACAGACAGATCCAGATGCAGCTGGAGGACATGCTGAAATCCTTTCATAATGAGCTGCTGACAGAACTGGAGAAGAAGGTGGAGCTGGACGCTCGATATCTAAATGCGGCTCTGAAGAAGTACCAAATGGAGCACCGGAGTAAAGGTGAGAGTCTGGAGAAGTGCCAGGCCGAGCTGAAGAAGCTGCGGAGGAAGAGCCAGGGCAGCAAGAACCCGTCCAAATACGGAGACAAGGAGATGCAGTACGTGGAGGCCATCAGCAGCCGGCAGAATGAGCTGGACAGCCACATCGCCGAGGGCTACAAAAACGCCCTGTccgaggagaggaggaggtACTGCTTCCTGGTGGACAGACAGTGCGCTGTGGCCAAGAGCAGCAACGTCTACCACAGCAAGGGTAAAGACCTGCTGGCCCAGAAGATCCCAGTATGGCAGCAGGCATGTGCTGACCCCCATAAGCTCCCTGACCGGGCGGTCCTCCTGACCCAGCAAATGGGTTCTGGGATCAGAGGGCCACACCACATTTCAGAGCCCATTCCTGGAGCCAAACCTCTGCCGATGTCCCCTGAACTAGCCGCTCTAATGAGCAGCCAGCAGagGATGATGGGAGTGGAGGGTGTCCCCATGTTGAACGGCACAGCTGGAGTTCACGGGGTTGAAGACTATCAGCACTGGATGGACGGTAAAGCCGCTCACGCCAAAACCCCGTCCCCACAGGTCCACCGGCACGGTGGAGACACCTACTCCAACACCCTGCCCGTCCGCAAAGTCGCTCCCATCAAGGGCAAGAGCACTCTGGCCGAGACCCAGACGCTGCCCCGGTCCAGCTCGGTGGCTGCGGGGCTGGAGAGGAACGGACGGACCCGGGTCCAGGCCATCTTCTCACACGCCGCGGGGGATAACAACACCCTGCTCAGCTTCGTCGAGGGAGACACCATCACACTGCTGGTGCCCGAGGCCAGGGACGGCTGGCACTATGGAGAGAACGAGAAAACTAGGATGCGAGGATGGTTCCCCTTCTCCTACACCAGAGTGATCCCTGAACCCGACACCAACAGACTCCATGTTAGtttgcaGCATGGAAGAAGCTGCAGCACAGGGAATCTTCTGGAAAGAGAACAGGTCACTATCCCGTCTCCTGATTACGGGACGTCCTCTCGGCTCATGGCGCACACCGCCTCCCTGAGCAGACAGAGACCGTACAGCGTCGCAGTGCCGGGGTTTCCAcagCAGGGGCTCGATGACTACGAGGCTCGCTTCCCCACGAGACTCGTGGATCCTTCACGTTTCACCACCTTCGTGACCCGACAGCGCGCCGGCGGCTCTGTTCACGAGCACAAGCAGAAGCTGCTGATCAGTGAGGATCTCTGCTCTCCAATCCTGTATTAGGAGCCTCAGTCTGCACACTCGTTTACCACCTTCACAGAGGAACCAGGGCTACCACAGGACTGATGAACCTGATAACAGCAGGACATGTCCTGGTGCCAATGTGCATACAGCATTAACCCTGTATTAACCCTCGTTAAGCTTTCCAAGACCTGTTCTTCACTGCTTTAGCTCACTCTGTATTATTTAGTCAGCAAATCGACATATTCAACATCGGACATGATGTCCTCAAAATGATGTGTTCTGTTGAAAAACTTTTGCACGGTTGGACAAACTCTACAGgactaaaatgattaaatatacctttttaaaatgcaataaaGTGTGGAAGTTAGGCCTGGCCTGTGGTTGGTCTGTGCTGCCAGCAGAGGGCACTAACAGCCTGAGTTTGTTCACAGAGACTTAAAATCAAAAAAggttttggcaaatgtgagacgggtCTTGGTGTTCTTTATGGgcgtttactttattttattaattgatttattcatttatttttgcccaCAGAGACCATTTTCCCCCAGTCTTAACATTTTACACCAACCTTAACTGACTAAtgtgagacctgcagtttttaaatgctgttctgggttcttttgggaccttatgggtgagttgtccatgcccttttggagtaatttcactAGACCTCCTAGGAAGGTTCACCAcagttccatgttttctccatttgttaaTCATATTGGCTCTTACCAAACCTTTATGAATGACTTGgcaaccttttccagactgattcATTTGTACTcaaatttcttcagattggggcataatgtgtcattttttcagatatttttggAAACAAATAATTTAGAGAGTCAAATTCCCAGCTTGAGCTTTTAGCAGAGAATTTAACACTCTAAATTATAATTTGTGGTCACATGTTGGTATGTGTGCTACAGTTTGTTGTTAGAttgggggggattttttttttatttaattttatttata

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48465 lncRNA upstream 20445 12696949 ~ 12697208 (+) True G35992
TU48425 lncRNA upstream 22037 12694830 ~ 12695616 (+) True G35972
TU48464 lncRNA upstream 39156 12678247 ~ 12678497 (+) True G35991
TU48463 lncRNA upstream 47505 12669922 ~ 12670148 (+) True G35990
TU48456 lncRNA upstream 114857 12586898 ~ 12602796 (+) True G35984
TU48487 lncRNA downstream 3960 12835279 ~ 12837320 (+) True G36011
TU48604 lncRNA downstream 123092 12954411 ~ 12954711 (+) True G36106
TU48628 lncRNA downstream 385465 13216784 ~ 13278356 (+) True G36129
TU48658 lncRNA downstream 475774 13307093 ~ 13311608 (+) True G36146
TU48666 lncRNA downstream 491855 13323174 ~ 13325570 (+) True G36154
XM_007248749.3 mRNA upstream 7285 12704338 ~ 12710368 (+) True LOC103039392
XM_022669122.1 mRNA upstream 25585 12671545 ~ 12692068 (+) True dpysl4
XM_022669121.1 mRNA upstream 25585 12673983 ~ 12692068 (+) False dpysl4
XM_022669119.1 mRNA upstream 52725 12606240 ~ 12664928 (+) False jakmip3
XM_007248744.2 mRNA downstream 133463 12964782 ~ 12976020 (+) True tekt3
XM_007248745.3 mRNA downstream 159824 12991143 ~ 13009673 (+) True pmp22
XM_022669132.1 mRNA downstream 466229 13297548 ~ 13305858 (+) True psme2
XM_007260019.3 mRNA downstream 521536 13352855 ~ 13359288 (+) True LOC103038526
XM_022669136.1 mRNA downstream 591718 13423037 ~ 13459971 (+) True heatr1
TU48468 other upstream 14597 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 151682 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 346691 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 915449 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 1715848 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 1631818 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1958061 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2601512 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 4169063 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 4169063 17000382 ~ 17018884 (+) False sun1

Expression Profile