RNA id: XM_022669136.1


Basic Information

Item Value
RNA id XM_022669136.1
length 6853
RNA type mRNA
GC content 0.54
exon number 46
gene id heatr1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13423037 ~ 13459971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACGTCTTTAGCCCATCAGCTGAAGCGGCTCGCTCTGCCCCAGAATGCACCTGAAGTTTTCTCGCGAAAGGAGACGGCTTCACTCCTATTCGAGCCGAAGCACGCCGCCACTTTAGACAGAGCCAGCTTCTACGCACTGGGCTGCACAGGGCTGGAGGAACTGCTGGGGATCGAATCAGCATTTGAGGAGTTTCAGGAGACGCTCTTCAGCGAGGCGTCTATGAGCCTAGAACGAAACGTGCAGACCAAGGAGGTCAACCAGAAACTGGACAAGAgcatctcactcttcctcacccGCCTATCTCCCTACTTCCTTCTGAAACCAGCCCTGAAGTGTCTGGAGTGGCTCATACACAGGTTCCACATTCACTTGTACAACCAAGACAGCCTGATTGCCTGTGCCTTACCGTACCACGATACCAAACTGTTCGTTAGAGTAATTCAGCTCTTCAAGATTGAGGACCCCACCCACAGATGGCACTGGCTGCATGGGCTTCAGAAACCTGGAGTTCCTCTGGCCAGAGGCACTCTGCTCACGCACTGCTATAAAGATCTGGGCTTCATGGACTTCATCTGCACCATGGTGACCAAATCACTGAAGGCTTATTCAGGAAGTGTTCGTGATGGACACTGTGCTCAGCTCAGGGTGATGTTTTCTTTTTACGCCGCGGCCATCGTTCCTGCTCTAGAGGCCGTGGAGAAGGTCACCGATTCCATCGTAGCCAAGCTGCTCCCCTACGTACAACTGGGTCTGAAATCAGAGCTGGTGGACTATAAAGCTGCCACCTACATGATCGTGGCTCAGCTGTCTGTGAAGGTGGTCATGCAGCCGGAGCTGGTGGACTCGCTGGCTTCCCAGGTGAGCAGATCTTTGAGCAGGGGTCCTGCGCTGACCACCGAGGGGCTGTCCTGTCTCGTCATCCTCCTGCAGAACCAGAAGGAAGGGGTTGTCGGGCCAAAGCCATTTGGGTATCTTTGTGCTGTGCCCTCCCTGGTGCCCACCCTACAGGCCATATCGGCATCCTACAGCATCAGTCCTGTACTGCGGTACCTGCTGCCACATCTCATTCACGCTGCTGTCTCTCAGAATGATGAGCAGCAGGACCAGGGTGCAGACAGGACTCTGCACAGTCGACTGCTGGAGTCGGTTCTTCAAATGCTTCCTTTGTCTGCTGGTCTGGAGAACACGGTGGCCAGGCTCCTCCTGGATGAATATGTGTCCTGTGGTTCTGAACTCTCCTCAGACTCTGTCTCCGCCCTCAATCAGAAGCTCCAGCCAATCGTCAGACTCTTTGAGCGCAGGTATCCTGGTGCTCTGGATGCTGTTCTGGAGAGTCGTGTAGCTGAGCTGACCTTAGATGAGCAGAAGAGCCTCCTCcatcagtttctctctctcaccctgaGCTGCGGCAAACACCagGTTCTGGCTGATTCAGACACATCTCTGATGCTCAGTCTAAATCATCCTCTGTCCTCCGTGAGGAACATGGCTCTGGACCACCTGAAAAACATCCTCACATCCGGACAGgaagGGTTTGACGAGTCCTTCCTGAAGAACGCACTACTGGAAAGGATAAAGGATGAAGCTCCTGAGGTCGTTCTGTCTGCGCTCTCAGCCCTGCagCTTTATGCTGACCGGATGAATCCAGAGGAGACTGTTTCTGGTTTAATTTCTCTTCTACATCGGATCCAGCCATCGAACTCCCAATGGTTTACAGTCTTGAAGGAGGCTGTCCAGTTGCTTGATGACCCTCGTCTTAGTGAAGTCAGCCCTGATCTCAGAACCCAGATTGGCTGGGAGCTTCTGCCCTTCGTGCTGGTGACCAACCCTGAGGAATCTGCACGGCTGCAGTTGCCTCTTTGTGTGTCTGAGACGCGCCTAATGACCCAACATCCTCTCACCCAGGGCTGGGCTGATGTTCTGAAGGATGTTCTGCAGAaaactcctcctgctgctgtcgTAGGAGTGGCCAGCCAGGTGCTCATCAGCACTCTGTCCAAAAACCTGTCCAGCATGGAACCATCGGCCAAACGCAACACTATTGAGAGTCTGTGTTCGCTGCTGGCTAAGCAAGGCTCTGGTGTACGAGAGAGGGCTGCGTTCGTGGTTCTGAGTCACGCTCTCCTCCAGGCTCTGGACTCTCTGAGTGAGAGTCAGCATCTCCACACGGCCCAGACGCTCTTCAGCCTGATGGAGCCTGCGCTAAAAAAGCTGGACAAACTGGAACAAAAACAGCTTAATTATGATGGTGATGAATCTACGTTCCTGCCTGTGTACGAGGTGCTCGGAGACTTCCTGTCCAAACTGCAGACTGACGAGAACTCGGAGAGAGAGCacggcctcctcctcctcgctcTACTCCGACTCTTCATCACCGCTCTCAAATGCCCTGAATCCTCATTTAAACGTGATCGCTGGTGGAACCTGGAGAAGCTGGATGAGAGTACGTGCTGTTACCTGCAGCTGCTGTGCCGTGTGTTTGATGTGGTTCTGTCGGGGGCCAGTGAGGGACCGCTGGCTTCCTCTTTCAGGGCCCTCATGCAGCTCTTGCTTCAGGTGCACCTCAACGAACCAGAGCATCTCTTCAAGTTTCTGTCTCTGCTGTGGGGTTACAGCGCTAACCGGGGCGACCAGCTGGAGGTTCACGTATCCGCGCTGCAGCAGACCCGCGCTCTGTATGTGGCCAAGGCTCTGCTGACCAGCGTACCTGTGAAGATACTCAACCTGCTGGCCTCGGCTTCCTCACCAGTGGTGCCGTCTTTGCTGGCGTGTGCGAGCTCTGGGGTCGGGGAGGTGAGACGGGCGGCGTTGGCTGTGCTGAAGTCTCTCTCTGGAGTCACCTCCTCTCCGTACTGCCCGCTGGTGGAGAGACTGCTCAGTGCAGCCGAAGAGCTGATTGCAGACCCGGCTTACCTCAGCCAGGCTCTGTCCAGGCTGTATGAGGAGGCCGTCAGTGTGAAGGTCAAGGGCAGGAACAAGCTGCTGTTGGCCATAGAGCAGctgttacagtgtgtgcagGCTCCCGACTGCCCGTCCTACATGGCCAAGGTGCTGCTGCGAGAGCTGCGGGATGTTAATGGAGAGTCGGTATTGTCTATCCTCCTTCCGGCTGTGGGGCGCGTGTTGGAGCAGTGTTCTCCGGACACGGCTGTGTTCCTGCTGGACGAGGCTCTGTTTCTGCAGCTGCTGTTGGGGAAGTATAACGAGGCATCGGCTGCTCTGCTGTCTCGAGACGCTCGCAGCCTGGAGCTCTTCGTCACGGCTCTGCGCGTCTCCTCCAGACCCTACGAGCACATCCCCAGCATCCAGATCATCGCCCTGGAGCAGATCACCAAGCCCTTCTTTGCAGCCCTGGATGATGAGAAGATCCAGCAGAGGATCATGGGAGTGATGTTTGATCTGCTGGTGGACACTAAAAGCCCAGCTGTCTCCCAGACCATCAACAGTGTCTTCAAAGCAATCACTGTGGATGCAGAGCTGGTGGCTAATGAACTGGCCCCCGTAGAAAAGCCTAAAGTTTCAGGAAGTGTTCAGCAGACTCGCAGAAGCAAAGCACAGCCCAAgaaaacacaggaaGCCGTGCCAGAAGAAAGTGCAGTGTCCTGGCCCAGGGTCACCCTGGTACTGGAGCTCCTGCAGCATAAGAAGAAGCTGAAGAGAGCTCAGATATTGGTGCCAACACTGTTCAGCCTCCTCTCCAGGTGTTTGGAGGCATCAGACGAGCAGGAGAACATGGAGTACACCAAGCAGCTGCTCCTCAGTGTCCTTCTCAACGTGTGTCAGAAGCTTTCCCCACAGGGAGGACCAATCAGCAAAGACATCCTGGATGAAGATAAGTTCAGCGTGGAGCTGGTGGTCCAGTGTGTGAGGACATCAGACATGCCTCAAACACACCACCACGCTCTGCTTCTGCTAGGAACTGCGGCTGGAATCTTTCCTGAAAAAGTTCTGCACAACATCATGCCCATCTTCACATTCATGGGCGCCAACATCATGCGGCTGGACGACACCTACAGCTTCCAGGTCATCAGCAGGACCGTGCGGACAGTCATCCCTGCCCTGATCCAGGCTCACGAGGCTGCGGGCAGTCAGTCGAAGGGACAGATGGAGGCTGTGGTGACCAGAATTGTGCACGTTTTCGTTGACGCTCTCCCACATGTGCCCGAGCACCGACGCCTTCCCATCCTCAAGCAGCTGCTGGATACTCTGGGACCGGACCGATTCCTCTGGGTCCTGATGCTGCTCCTATTTAAACAGCACACTGCCCTCAGCACTGCGGGAGCAGAGAAGGAAGCAGCTCTGGAGCGGGACCAGGAGTTCTGGATCTCGTTGTGTTGTGAGTTTGAGGTTCAGGAGCAGCTCGCCTCTCTCATTAAGATCCTTCAGTTCCTCACAAGTCTACCAAAGGACAAAGAAGAAGTTACGGACAAGAGGAGGGGGAGGGGAACGAGAGGACAGAAGAAGGAGGAGAGCACCACAGATCTGATCTTCAGTGTGGAGACCCACAGTGGAAAAGAGCTCCGGCATTTCAAATTCCTCTCCGTTTCCTTCATGGCCCAGCTACTGTCCTCCAGCAGCTTTGTAGGAAAGGTGGCCGattgtgaggatttgactgaAAAAGCTCTGCAGAACCTCCAGCAAAGTCTTTTAGAGGAGAACCTGCGCTACATTCACATGGTTGCTCAGTGCGTAGAGGAGAACGCAGACCAACCCACCACCAAGTTCTGGAGGGCACTGCTCAACAAGTCCTATGATGTCCTGGATAAGGTCAACGCCCTTCTACCCACAGACACCTTCATCACGGTGGTGCGTGGGCTGATGGGTAATCAGCTGCCCTCAGTGAGGAGGAAGGCGATGGATCTGCTCAACAACAGGCTGCAGCAGAGGACCCAGTGGGAGTCGCAGCAGGTGGTTGTGCTGCTGGAGTTAATCAGTGACCTCCTGGTCATTGTGGGCCATGGTCGTGTCCAGCCCGAGCgacaggaggaagaggagcaggCCATAAACCGCCAGACTGCGCTCTACAGTCTGAAGCTGCTGTGCCGCATTTTTGGCACAGGCCACCAGGAGGCGTTCCTGCCAGTACTGAACAGGACGGTGGAGCTGGTGGCGAACCCGGAGGAGGAGAGGAACGTTATGGGCAGTGCGTTGCTGTGTGTGGCTGAGGTCACCAGCACCCTGAAGGCCCTCGCCATCCCACAAATACACAAgTTGATGCCGGCGGTCCTACAGACCCTGCAGGAGCGTAAGGATCTGCTGTCTAATGAAGTGTATCTGCTGAGTGCAGTCACAgccctgcagagaacagcaGAAACCCTACCACACTTCATCAGCCCGTACCTTAAGGACACCATATCACAGGTGACTCGTCTGGATCGGGTTGCCAAGCGTCTTTCCTCCTGCCCTCAGCTGGCCATCAGACTCTCCTCCCTCAGCTCAACACTGGCAACTAAAGTGCCCTCCAGGGTCCTGCTGCCTACCCTCGCCAAGTGCTATGGCGGCATGGTGGACTCCCAGCAGAACCGTCTCGGCCCTCTGATGAACATCCTGAGGGAGCACATTGGTCAAATGGAGAAAGAACAGTTTACCTCCCACCAATCAGAGCTCACCTCTTTCTTCCTTTTGGCTCTCGACTTCCGCAGCAAACACTGccagGGAGATCTGGAGAAAACTGCAGAGATCGAGGGTTATGTCATAGACTGCCTGCTGGCCATGGTTATGAAGCTCTCAGAGGTCACGTTCAGACCTCTGTTCTTCAAGCTGTTCGACTGGTGTAAGACCGAAGGAGCATCTAAAGACCGCATGCTGACCTTCTGCAGACTGGCCGACAGCATCGCTGACCGGCTGAAGGGTCTGTTCGTGCTGTTTGCAGGTCAGCTGGTCAAACCCTTCTCAGACCTGCTCCACCAGCTCAACTCCGCCCAGACCGATGCAACCTACTTTGATTCAgagagtgatgatgatgatgatgatgatgaggacgATGAGGACAACATTAAGAAGAGCAGTCTGCTGCTGCAGTACACGCTGGACTGCCTGCATAAGATCTTCCTGTACGACACACAGCACTTCCTCAGCAAGGAGAGAGCTGATGCTCTGTTGGGCCCGCTGGTGGATCAGGTGGAGAACATGCTGGGAGGAGAGCAGGTGTATCAGACCCGGGTGAAGCAGCACCTGGTTCCATGCGTGGGTCAGTTCTCTGTTGCGATGGGAGACGATTCTCAGTGGAAGGTGCTCAACTACCAGATCCCTAAGACTCGCCACAGCTCTCCCAAGGTGCGTTTCTCTGCTCTTATGATGCTGCTGGAGCTGGCTGGCAAACTAAGAGAGAACTACATGGTGCTCCTGCCAGAGACCATCCCCTTCCTGGCAGAGCTCATGGAAGATGAATGTGAAGAGGTGGAGCATCAAGTCCAGAAGGTCATTCAGGAGATGGAGACGATCCTCGGAGAGCCTCTTCAGAGCTATTTCTAACATCAGCAGAGCTTCTCCTCAAACCCAAAACCCAGAGAGTCTACGGTTCATGATGTGTTCACTCCTGGCGAGTTTACatattaactgtatttttacagaaaCGCCCACATGAGCCAGCAATGGCCAGACCAGAGACCTCTGGCCCAGAGTCCAGCTGGGCCACTCTGGCACATAGCCTCGAATGTTCCGAAATGCAGACGTTACCTTGAACTTTGACTCATCGGACTTGCTGttaaaatgtgctgtttttaaaaatcatttttatgcattaaaaacatttactgtatatgcAGTCTGTATTATCAAGTCTGTTGATTGCGTTTGTCCATGAAAATGATTGTTGCATCCACATGATTAAAAAAGCTGGAAggtaaaa

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0043487 regulation of RNA stability biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14550 UTP10, HEATR1; U3 small nucleolar RNA-associated protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48680 lncRNA upstream 28457 13392645 ~ 13394580 (+) True G36166
TU48669 lncRNA upstream 86603 13325935 ~ 13336434 (+) True G36155
TU48666 lncRNA upstream 97467 13323174 ~ 13325570 (+) True G36154
TU48658 lncRNA upstream 111429 13307093 ~ 13311608 (+) True G36146
TU48628 lncRNA upstream 144681 13216784 ~ 13278356 (+) True G36129
TU48694 lncRNA downstream 14183 13474154 ~ 13474794 (+) True G36177
TU48692 lncRNA downstream 15170 13475141 ~ 13477939 (+) True G36175
TU48695 lncRNA downstream 42275 13502246 ~ 13520560 (+) False LOC103039668
TU48783 lncRNA downstream 101157 13561128 ~ 13564733 (+) True G36244
TU48816 lncRNA downstream 202459 13662430 ~ 13662847 (+) True G36273
XM_007260019.3 mRNA upstream 63749 13352855 ~ 13359288 (+) True LOC103038526
XM_022669132.1 mRNA upstream 117179 13297548 ~ 13305858 (+) True psme2
XM_007248745.3 mRNA upstream 413364 12991143 ~ 13009673 (+) True pmp22
XM_007248744.2 mRNA upstream 447017 12964782 ~ 12976020 (+) True tekt3
XM_022669126.1 mRNA upstream 601763 12717653 ~ 12821274 (+) False LOC103024023
XM_022669141.1 mRNA downstream 680 13460651 ~ 13471964 (+) True arg1
XM_022669146.1 mRNA downstream 41076 13501047 ~ 13508892 (+) True nudt13
XM_022669147.1 mRNA downstream 41271 13501242 ~ 13508892 (+) False nudt13
XM_022669145.1 mRNA downstream 41272 13501243 ~ 13508892 (+) False nudt13
XM_022669144.1 mRNA downstream 41662 13501633 ~ 13508892 (+) False nudt13
TU48468 other upstream 719981 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 857066 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 1052075 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1620833 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 2421232 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 1003166 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1329409 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 1972860 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 3540411 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 3540411 17000382 ~ 17018884 (+) False sun1

Expression Profile