RNA id: XM_022669139.1


Basic Information

Item Value
RNA id XM_022669139.1
length 5062
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103043889
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13391819 ~ 13420942 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGAGCGCTGAAGCTGaggctgatgatgatgaggatgatgataaCGATGATGGGAGGACCGCGGGATTAACGGCGGGGTAAAAAGGGGGTCATTCGGGTGGTCTAGCCGGGGGGCTTCTATTCTGGATGCCCAGAAGGCCATGATGAAGACCGACCCTTCCTCAGCCGCGTCAGCCACGCTGCCCCCCCTGCATCCGCACGATGCCGCGAGCGGCCGCGCCTACGGCTCCAACGTGCACCGCATCAAGAGCCTCTTCATGCAGATGGGCGCGAGCCCGGACCCCCCCGCAGCACCGCACAGAGCCGCCGCCACCGCGCGCGCCCCGCTGCCTCGCGCCGGCAGCCTGAACGAGCGCGTGGACCACGGCGCACTGCTGAAGCTCGGCGCGGAGGGCGCGCAAGGGGGCGCGAGCTCCTCCACCATCATCACCCCGTCCATCAGCGCGTCCTCCTCCATCAGCAGCATcacctcgtcctcctcctcctcctccaggcTGCAGGAGACCCGGAGGATCTTCGAGCGGGCGGAGGGGGACGATGCCGGGGGCGGCCGGAGCGCGCTGAAGAAGGAGCGGGCCGGGGGGCTCCAGCACGGGCGCCTGGACGTGGTCGCGCGCTTCAACGGCAGCACCGAGTCGCTGGACGGGCTGGACGCGTCCGAGGCCGTGTCGCCCACCGTCAGCCAGCTCAGCGCCGTGTTCGAGCGGGCAGCGGAGCTGCGTTCCAACCTCAACCGCCTGTCCCGGATCAGCGCAGGCAGAGCGCGGCCCAGCCCGGCCCAGGAGCACCGGGGGAACCGCAAGGGGCGAGAGCAGGAGGGCGCCGCGGAGGACCTCCAAAAAGAGGCCACACGGGACACCAAGCAGCAACAGGCAGCGTCCGAGCCGCTGAAGAACGCCAATGGCGAGACTTCAGAACCTGACCCTGCCCAGGTACTGGAGGTGGAGGTCAGCGGGGCGAGTAGGGGGGGCAGCTGCTCCGTCGGGGTCAGCAGTAGTAAAGAGGACAGTGGGGATGATGAGGCCACCCTAAAGGATGACTCGTCGGCAGGTGCCACCCTGGTGGAGGTGAGTATGTACAGCGCAGCGGGGGAGGACTCCGGAGGCAGCCAGCTggaggatgaggatgatgatggtgaagATGATGAGGAGGGCTGCTACGAGCCTGAGGTCACCTGTGTGGAGGCCCCGGGGCTCCCGGTGGAGGAAGATCCACCACCAAGCCGCAAGATACGCTTCAGCAGCGCACCGATTAAGGTGTTTATGACGTACTCCAATGGAGACTATGACCGGAGGAACGATGAGGTGGACCCCATGGCAGCTTCAGCCGAGTACGAGCTGGAGAAACGAGTAGAGAAGCTTGACCTGTTTCCTGTAGAGCTGGAGAAGGacaaGGACGGTTTGGGTATCAGCATCATCGGGATGGGAGCTGGTGCTGATATGGGTCTGGAGAAACTGGGGATATTCGTCAAAACCGTCACCGAAGGAGGAGCTGCCCACCGAGATgataggatCAGAGTGAATGATCTGATAGTGGAGGTGGATGGGATCAGTCTGGTTGGAGTGACTCAGAGTTTTGCTGCCTCTGTGTTGAGGAACACCTCTGGAACAGTTAGGTTTACAATCGGCCGGGAGAAGCCGGGGGAGCAGAGCGAGGTGGCGCAGCTGATACAGCAGACACTGGAGCAGGAACGCTGGCAGCGGGAGATGATGGAACAGCGCTATGGAAACTACATAGGAGATGAAGatgagCCTGCAGCCTACGGCagtgatgaagaggaggaggaggaggaggaggatgaagagacAGGCTCCATGTACCCCAGTGCTATTGAGGTGTTTGACCTGGCAGAAAATGAAGACGCGCTCTCTCCTGTGGAGATGGACCCCGAGAAACTCGCCCACAAATACAAAGAGCTGCAGATCAAACATGCCGTCACTCAGGCTGAGAttcagcagctcaaaaagaagctGAATCACGCGGAGCAGGACAGGCAGCGCTGGCGCAACGAGAAGGCCCAGTTAGAGCGCAGCGTTCAGGAGAACAGGGAGCGCATGGAGAAGCTGGAGGGTTACTGGATGGAGGCACAGAGTCTGTGTCAGGCGGTGGACGAGCACCTGAAGGAGACGCAGGTGCAGTACCAGGCCCTGGAGCGCAAATACAGCAAGGCCAAGCGTCTCATTAAAGAGTACCAGCAGAAGGAAATTGAGTTTCTGAAGAAGCAGACGGCTCAGCGGAGGACTCTGGAGGAGACTGAAGCGTCACACAAGGAGGAGGCAGAGCAGCTCAAGGTCAAGGTCACTGATCTGGAGTCGCAGGTAGAAGAGCTGAGGTCCTCCGAACCTTTATAAAGACTGTTGCTGTTCTCAACTGCTGTGCAACCAGATGGGTGCTGCAAGATGTGAACAGAAGTTGGACCCTTACCCAATTTAACCTCCTACCTTCTAACCTCCAGGCTTTTCCCTCGTCTAGAGCCTTTCCTAAGTGAATACTTCAACCatcagcatttttaaaaaatgactttttaattttatctgaTACCTGATTTTACCACATACCGGACTGCAGCTCGGGCATCTAACCAATtcaggaaaagaagaagaaagtgaGACTGTGTCTCGAAGTTGTCTGTATGAGGGGTATATGGCGAGCATCCTTCAACTGTCGTTAATAAGACTgaagtttaaatagtttaaaaagtcAAATTATCCTGATTGATCACTGACCCCAGATTTAAAGGTTTGattaaaaaagttcaaaatCTTATTAGACAGATATGTAAACAAGGTTAAAAAGATGTAATTCAGTAAGTTATTGTGGATCCTTATGTAAACCGTTTTTCAAGGAGTTAAAAGCTGCATTGGGCACCGGCTTAAATAAAACCAGTGTATTTTGACATGTTTTTTGAAGGTTTAcactaaatgtgttttaagggaAACTATCGAGAATTTTATTGTTAGGAATAAGTTGGGTGCACTATAAGTTAGGTGCATTTATCTAGACACCACACTTCCACAATACACACTGGGGGAAGTGGAGGCCTGGTGCAAGTATGAGGCCTGGGTCTATTCAAGATGGTGGATGTTTTTGAATCCCTCTCCAAACACACTGGAATCTGTTGCACCTTTTGTGTGCTATTTACTCTTTTGAACGTTCTCCGTATGCTTGGGCTGGCCAACTATAGAGCTATAGAGCTTGGGCTCTTTGAGGATCATcacatttactgcatttatcTGATGCTCTTATCTAGAGCGACTTAGAAggttgggccaatgtagtgttaggagtcttgcccaaggacttttATTGATGTAGCACAGCCAAGTTACCCAAACCTGGAATTGACCCACAGTCTctcacatggtagctcactggcagacTGTGGTGTTATGGTGTTATCCATTGCACCACACAAACCATCATCATTCAGTTCCCATTCACTCACATTAGCCTCATACACTTACTTCCATATTGGGTAACAGCAACACATAGTCGTTGGGCTAGGAACCTAAGCTTTACCAACCTTTAGCTCCTCCTTTAGACCACCTGTTGTGTAAAGGGTGGACTATCTAGTGTTTTGTAGAACTATTGAAAAGTCTTATTACTATTGACGATCTTTACTATAGTGATACTTACCCAGGCCTAACTGGAACTAAATTACCATACTCAAGACATCCCATTACAATTGCTATGAGGCATGAAGTTACAGAGGTGAGATCTAAGGCTAAGGGTACAGATATAATGGTGGCATCAATGTGATCATCATCACATTCCATCAGATCAGTATCTGGGGTCAGTGATCAGTCATGTTctcttaaaattttatcatACTTATGTCTTTAAAAGGGCATTTCAGAACTTTTctccaaaacatatttttccagttttttccagtgtttgtttttatttgtgaaaTATGTGCTTCTGAGCTAAGATATAGTGAAATGGTCCCTCCCGTAAACTTCATCAGGACATCAGAGACTGGCCTTTACTTTAGGCCGTAAATATcaaaccttttttatttgtgataaCGCACATTTCTGCTAGCTCCTCTAGAAGATTTTGAATAGTATGTTAGTTCTAATTGAACACTGATGTTACATCTGAACATTTTGTGGCTGTTCTAGATTAAACACAGACATTTAAAGCTTGTACTCTGAAGATTGTACTGAAAATGAACAGCTATATGTGtatgtaatgttttacagaaatTCTATCACCCGTAGTGATTTGTAAGACTGAGGGTTATTCACACTCTTGAACACATTGGTAGGAATAGCCAGTGAGGTACCTAAACTTCCAGAATAACTGGACTGGTGTGTTTTTATCATCAAAATAGAAGAGCATTTTGGGTTGTATGTGCCTAGATAGACCATGGAAAACTACTCATAATTGGACagttttttaatctaaatacTTTTGTGATTTCATGTAATCATGAAGAAACAACCAACAATAATCTTTATCATTCTGTTAAATACAAATGGAGCAAAATTGCAGGCTTGTATTTTTTAGTTTCAAGAAGATATTGTGGATCATATGTAGACAGATATTAAGAAATGGTTGGTTAGAAGACATACAAGAAGGTGGGTGGATGACACTGTATTTTGGATTGGGGTCAGAATGTCAAGTGTGATAAAAAATGGCTTAAGATCGGATGGAAGACCACTGGGTTGGTTTGGAGggatcatcatcatcaggtCTTTTCTTAAGGGGTGGCTGTTCTTCAGTTTGGCCAGCTCACAATGCTGTCTCTCAGGCACTTTCACCCCGCAAACAACCGATTTCATGCCTTACACCTGTGTCGTTTAAACAGCAACGATGCTTGTGAAAATATCTGAGATGATGGATGTGgcggtctggaagtgaggtgagttcaggtaaatttttggtgtattgctatcttggcaacgtaTAACACAGGTGCACAACTGTCTGATTAGAAACACCAGaaattcattgctatcttggctacAACACACATACCTCCCTGTTACacacccaacttttacatcaacagtacacagaatacagaataaaataacattgctgttcacgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48709 lncRNA downstream 80464 13307102 ~ 13311355 (-) False lsm5
TU48613 lncRNA downstream 380807 13006516 ~ 13011012 (-) True G36114
TU48624 lncRNA downstream 386072 13005499 ~ 13005747 (-) True G36125
TU48623 lncRNA downstream 389800 13001731 ~ 13002019 (-) True G36124
TU48622 lncRNA downstream 396932 12994574 ~ 12994887 (-) True G36123
TU48751 lncRNA upstream 25107 13446047 ~ 13450206 (-) True G36223
TU48757 lncRNA upstream 54226 13475166 ~ 13477757 (-) False p4ha1
TU48769 lncRNA upstream 80356 13501296 ~ 13504050 (-) True G36236
TU48796 lncRNA upstream 138278 13559218 ~ 13573367 (-) True G36253
TU48800 lncRNA upstream 166846 13587786 ~ 13609936 (-) True G36257
XM_022669135.1 mRNA downstream 6556 13361736 ~ 13385263 (-) True cdh20
XM_007260018.3 mRNA downstream 40725 13339493 ~ 13351094 (-) True kbtbd2
XM_022669134.1 mRNA downstream 55796 13312552 ~ 13336023 (-) True avl9
XM_022669133.1 mRNA downstream 80294 13307088 ~ 13311525 (-) True lsm5
XM_022669131.1 mRNA downstream 94389 13271875 ~ 13297430 (-) True LOC103042649
XM_022669143.1 mRNA upstream 56559 13477499 ~ 13500177 (-) True p4ha1
XM_022669142.1 mRNA upstream 56559 13477499 ~ 13500177 (-) False p4ha1
XM_007260021.3 mRNA upstream 88016 13508956 ~ 13514238 (-) False dnajc9
XM_007260022.3 mRNA upstream 88016 13508956 ~ 13514218 (-) True dnajc9
XM_022669150.1 mRNA upstream 461517 13882457 ~ 14439229 (-) False grid1
trnam-cau_20 other downstream 191581 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 194044 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 680274 12709808 ~ 12711545 (-) True G36074
trnaq-uug other downstream 723032 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 723912 12667836 ~ 12667907 (-) True trnaq-cug_2
trnal-caa_1 other upstream 1530697 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 1530901 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 1531164 14952104 ~ 14952216 (-) True trnal-caa_3
trnal-caa_4 other upstream 1531368 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 1531572 14952512 ~ 14952624 (-) True trnal-caa_5

Expression Profile