RNA id: XM_022669145.1


Basic Information

Item Value
RNA id XM_022669145.1
length 2440
RNA type mRNA
GC content 0.46
exon number 9
gene id nudt13
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13501047 ~ 13508892 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGGTGGCGGCTTCTGATTCGCCCTTACACAGACGGGACATGTAGTTCCATGAGGCAAGCTACAAAACTAGCAGCAAACCTCGTATCTCCACGGCTTTGAATTAAATATCGAAATGTTGGACGGTTTAATGTGTATCACTGTACAGACGGACTAACCAGGGGTCCTGACTGAAGACCGGTGGGCTGAGACGCGTTTCTGAAGCCCACAGTCTGTGAGGAATTACCGGTGGCGGACATATTGGACTGCGGTCAGCTGTGACTCCATGAACCTTTAGCTACAgtctgTTCACTGTATATCCAGAAGAATGCAGTCTCTGAGGTCTCTGTTCAAACCAAAGCTGGTGACCCCTCTGCCCTTTTCCACCTATGTGTCCCGGATAAGATATCTGATGAAGTTAAAAGAGGACGATGACGCGTGTCGGGAAGCCCTCAGGTCTGGAAACTTGATGCTTTTCCACAAGCTGGCTCCTCTGGTGCGGAGGAACAAACATGGTGTATGTCAATCTCCACGTATTACAACTCCAGTTGTTGAACAGATACTGGAGAAGCTCGGGCAAGACAAACAGCTGGTCAATGAAGCTGTCCTTATGAGCTCTACTGAGTCCAATGAGCCCCAGTTCTGTCTGGATGTGGGTGATTTACAGCAGAATGGTATGGAGATGCTTTGTGGCGGTGTGTTCATGGATATCCGGAAAGCCTTCCTAATGCTAAGGACACCAGATGCCTcaatggttgctaagggTCAGGCCCTGTTGAGGTGGCATCAGACGCACGGCTTCTGCAGTGCGACTGGACATCCCACTGTCCGAAACCAGAGTGGCAGCCAGAGAGTGTGTCCCAACAGCGGGATCACCTACTACCCCCAAATGGCACCAGTGGTGATGGCTTTGGTGTCTGATGGAAGCAGATGTCTGCTAGCCCGCCAGAGCACTTTCCCACCAGGGATGTACAGCGCACTGGCGGGCTTTTGTGATGTGGGGGAAACGATGGAGGAGGCCCTGCGGCGGGAGCTGGCTGAGGAGGTGGGACTAGAGGTGGAGACGCTGCAGTACTCTGCCTCGCAGCACTGGCCTTTCCCACAGACCTCCTTCCTGGTAGCCTGCCATGCTACGATTAGCCCTGACAAAACAGAGTTAAGTGTGGATAAGGCAGAGCTGGAGGACGCTCGTTGGTTTAGCCTAGAGGAGATCCAGGCAGCTCTGCAGATGAAGACACCTCCTCTAAACCGCAGATCTGAATTGCCAGGCTTCTGGGTGCCTCCTGCTGTCGCTGTAGCCCGCCGGCTCATCCAGGAGTGGGCTGACCAGCAACAATGTCAAAGGAACGGGTCTCGACGTGAATCCCAAATGAAGGAGTAGACACTGTGCACTGTTCATCAGCCAATTGAGGCCCACTGTTTCAGTACAGTGGCCTCAGCTTCACATGGTGCTTAATAAGCTAGCCTCTTCTATGAGATGGTAAGAAGATATTTTTAAGTGCCTGGAGTATTCATTACAGGTTAGCACATATTTTTGGTGCAGCTACACTACCTGCTACATAGTTTGTTTTTGCCAGTGTTAATTTTAATAggtgattttaattttaaaaactgtgaaTTAGTTTTACTCAACGTGAGTAAAACtaatactaattaataatatttgttcaaatatatactttatgGACTTTTTATGGACAATTAGCAAAAACTTTTGTCGCATTAAGTCAAGTAGTGTCTGTACCATGCATTGTAAAATTGCCAGTTCCAAGTGTATAGTGGTCTGTTCCTCAGCGCTCCCTTTCTTTGCTCACGATTAGTGTACACAGTGAAATGGGATGGATGAGGCCAGGTCCGGTGAGATTTTGAGTTCGAGCATCATGAAATACTTGAGATTTTCAGCATTTTCCTATGTGTGCCCAGAGGATTCCAGAGGAGGCTGTTTTCTCTCATACTTGGTGCTCAATTCAAGTCATTGCATTCAATTTATAACCATAACAGTTGTTGTTTGGAGGCCCAGGCCAGCTCAGGGACTTTGAGcaaattgattggtttgcttgccttgtgtAAATGGTAAATGCTCTGTTTatagaaatatttaaacaattaaacaaaggtttttaatttaggttGTTTTAGGGAACAAGGCCCAGAATCTTGAGGAGCAGGATAGGCCGCATACTGGACATGAGGTTTTTAATCTGCTGCTGTAGCCGATCTGACCACAGCTTCATCTGTGGCAGGGGCTTTTTATGATATGTTAATCTCCTGACTAACAGgtgtataagaaaatataattttgaaaaacattttaaatgacacAACTGTACTTCTACCTCCAGAATGGACTTCTAACTAGAACCAGTATTTTAATGTCACTTTACTGTGAGATTgtactgtaaattattaatCCATGAATGATCCATTATCTTGAGTTAATAAATGTATCTGAGACCTGCaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48692 lncRNA upstream 23304 13475141 ~ 13477939 (+) True G36175
TU48694 lncRNA upstream 26449 13474154 ~ 13474794 (+) True G36177
TU48680 lncRNA upstream 106663 13392645 ~ 13394580 (+) True G36166
TU48669 lncRNA upstream 164809 13325935 ~ 13336434 (+) True G36155
TU48666 lncRNA upstream 175673 13323174 ~ 13325570 (+) True G36154
TU48783 lncRNA downstream 52236 13561128 ~ 13564733 (+) True G36244
TU48816 lncRNA downstream 153538 13662430 ~ 13662847 (+) True G36273
TU48819 lncRNA downstream 167921 13676813 ~ 13677131 (+) True G36276
TU48847 lncRNA downstream 300850 13809742 ~ 13810238 (+) True G36298
TU48848 lncRNA downstream 300850 13809742 ~ 13810182 (+) False G36298
XM_022669141.1 mRNA upstream 29279 13460651 ~ 13471964 (+) True arg1
XM_022669136.1 mRNA upstream 41272 13423037 ~ 13459971 (+) True heatr1
XM_007260019.3 mRNA upstream 141955 13352855 ~ 13359288 (+) True LOC103038526
XM_022669132.1 mRNA upstream 195385 13297548 ~ 13305858 (+) True psme2
XM_007248745.3 mRNA upstream 491570 12991143 ~ 13009673 (+) True pmp22
XM_007260023.3 mRNA downstream 5419 13514311 ~ 13520702 (+) True LOC103039668
XM_007260024.3 mRNA downstream 16871 13525763 ~ 13630014 (+) True ccser2
XM_007260025.3 mRNA downstream 16871 13525763 ~ 13630014 (+) False ccser2
XM_007260026.3 mRNA downstream 16871 13525763 ~ 13624712 (+) False ccser2
XM_007260027.2 mRNA downstream 16871 13525763 ~ 13624674 (+) False ccser2
TU48468 other upstream 798187 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 935272 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 1130281 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1699039 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 2499438 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 954245 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1280488 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 1923939 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 3491490 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 3491490 17000382 ~ 17018884 (+) False sun1

Expression Profile