RNA id: XM_022669150.1


Basic Information

Item Value
RNA id XM_022669150.1
length 5102
RNA type mRNA
GC content 0.50
exon number 16
gene id grid1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13882457 ~ 14439229 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcccccctcccctcctcccCCTTGCTCCGaaggacggacggacggacggacggacggacggacggacgtgCGCGCGAGAGGAGAGGCTGTgggatctgatctgatcttggAAGCGCGAGTGAGCGCGCGCGGATGAGCTGCCGGAGATGGAAGTGCTGATCGCGTGGCTTTGCTTTGGGATATGGCAGTGCAGCCCTGCAGGAGCCGACTCCATCATCCACATAGgTGCCATTTTCGAGGAGAATGCCGTGAGGGATGATGAGGTCTTCCAGCTGGCCATCTCTGACCTCAGCCTCAACGATGACATTTTGCAGAGTGAGAAAATCACCCACTCCATAAAATTTATTGAGCCCAACAACCCCTTCCAGGCAGTGCAGGAAGccTGTGAGCTGATGACGCAAGGCATCCTGGCCCTGGTGACCTCTACAGGCTGCGCTTCAGCGAGTGCCCTGCAGTCGCTGACTGACGCCATGCACATCCCGCACCTGTACGTGCAGCGTAACGGTGATGGCTCGCCGCGCACTGCCTGCCAGTTCAACCCCAGCCCGGAGGGGGAGCGCTACACGCTGGCCGCCCGGCCGCCGGTGCGGCTCAGCGATGTCATGCTCACGCTTGTCGCTGAACTCCGTTGGCAGAAGTTTATCGTGTTTTACGACAGCGATTACGATATACGTGGACTGCAGGGCTTCTTGGATCAGACATCGCGGCAAGGCATGGATGTGTCTCTGCAGAGGGTAGACAGGAACATCAGCGGCGTCTTCTCCAGCCTGTTCACCAGCATGCGCACGGAAGAGCTGAACCGCTACAGGGACACTCTGAGAAGAGCCATCCTCCTGCTGAGTCCTCGTGGAGCCCAGGTCTTCATCCACCAGGCGGTAGAGACAAACCTGGCCTCCAAAGACAGCCACTGGGTGTTTGTGAATGAGGAGATCAGTGACACTGAGATCATGGAGTTGGCCCACAGTGCCTTGGGAAGGATGACGGTCATCCGGCAGATTTTTCCGCTGTGGAGAGACAGCAGTGTGAGCTGTATGAGGAACAGCCATCGCATCTCGTCTCTTCTCTGTGACCCCCAGGAGGGCTACCTGCAGTCACTAGAGGTCTCCAATCTGTACCTCTACGACAGTGTGCTGATGCTTGCTAACGCCTTCTACAGAAAGCTGGAGGACAGAAAGTGGCACAGCATGGCAAGTCTGAACTGTATCCGGAAGTCAACCAAGCCCTGGAATGGAGGCTGGTCTATGCTAGAAACCATTCAGAAGggtcgTATTACTGGGCTCACTGGAGTTATGGATTTCATGGACAACGGCTCCAACTCGCACGTTCAGTTTGAGATTTTGGGCACCAGCTTCAGCGAGACCTTCGGAAAAGACATAAAGCGGTTAGCCACATGGGACTCGGTACATGGCCTCAACGGGAGCTTAAAGGAGAGCCGGATTGAGAACGGCATGCAGGGAGTGACAGTAAAAGTGGTGACACTGCTGGAGGATCCGTTTGTCATGGTGGCGGAGAACATTCTCGGGCAGCCCAAGAAGTACAAAGGATTCTCCATTGACGTGCTGGACGCCTTGGCCAAGATGCTGGGATTCAAATACGACATCTACCAGGTGGCAGACAGCAAGTACGGCTCGCAGCTTTCCAACGGCTCGTGGAACGGAATGATCGGAGAACTGATCAACAAGAGGGCCGATCTGGCTGTGTCGGCCATCACCATCACACCTGAGCGGGAAAACGTGGTGGACTTCAGCAAGCGCTACATGGACTATTCTGTGGGAATCCTGATGCGTAAGCCTGAGGAGAAAATCAACATCTTCTCGCTGTTTGCGCCCTTCGACCTTGCCGTCTGGGCCTGCATCGCCGCAGCCATACCTGTGGTTGGAGTCCTGATCTTCCTGCTGACCCGGATGCAGTCCCTACGGTCCCAGAACCCTCCGGGACCTCACCAGTCTCCATCCATGTCCAGTACCTTACACAGCGCTATATGGATTGTGTACGGCGCCTTTGTGCAGCAAGGTGGAGACTCAGTGGTTGGCTCAGTGGCCTTGCGGATTGTGATGGGCAGCTGGTGGCTCTTTACCCTGATTGTGTGCTCATCCTACACAGCCAACCTGGCGGCCTATCTTACTGTCTCGCACATGGACAACACCATACGGACTTTTCAGGACTTGGCGAGACAAATGGACTTGGATTATGGTACAGTGCGGGACTCCGCCGTATACGATTACTTCCGAGCCAAAGGTACCAACCCCCTGGAGCAGGACAGCACTTACGCCGAGCTGTGGAGGACCATCAGCAAGAACAATGGCCAAGACTACTCTGTATCCAGCCCCTCAGAGGGCATCCGCAAGGCGAAGAAAGGCCCGTACGCGTTTCTGTGGGACATGGCCGTAGTGGAGTACGCGGCACTGACGGACGACGACTGTACCATCACTGTGTCGGGAAACAGCATGAGCAGTAAAGGCTACGGTATCGCCCTGCAGCACGGCAGCCCCTACAGAGACCTCTTCTCCCAGAAGATCTTGGAGCTGCAGGAGAAAGGTGACCTGGATGTGCTGAAGCAGAAGTGGTGGCCTCGCTCGGGGCGCTGCGACCTGAGCGGCCACTGGGGGTCTCAGTCCGACGGGCGTTCGCTCAAGCTGCACAGCTTCGCCGGGGTCTTCTGCATCCTGGCTGCCGGGCTGGTGCTGGCCTGCCTGGTGGCCGCCTTGGAGATGTGGTGGAGCAGCAACCGCTGCCGGCAAGAGCAGCCCAAAGAGGACAAAGAGGTGAATCTGGAGCAGGTGCATCGGCGTATGAACAGTCTTATGGACGAGGACATGGCGCACAAGCAGATCCCCGGCCCGTCTATCGAGATCTCTGCCCTGGACATCGGCAGCATGCAGCCCAGCCAAGCGCGGGAGGCTGGCCGGGACTTCCCGGGCACGGCTCTGTCTGTGAGCACCTTCCTACCGGAGCAGGCACATGGGGTGGGCCGGACTCTGGCGCCGGGGCCTGGCAGCACTCTGCCCCTGCCACTCAGCAGCTCCACCATGCCCTCCATCCAGTGCAAACACAGGGCTCCCAACGGGGGGCTCTTCCGGCAGAGCCCCGGCAAGACGCCCATGCCAATGTCCTACCCGCCAGTACCAGGAGGACCCATCCCAGAAGCCATTGAGCCCACCCACAGCACGTCCATCTGAggctattctttttttctttttttctttgtttgtttgtttgtttttttgccacaggggactggtggtggaggagaCTGGGGCATCACatgtaaaaagaacaaaaaaaaaggaaaaagggaaaGGAAGGAGTGAAAGTAGAGATTTTTAATACACatacaaaatggaaaaaaaattggaaaaaaaaaacaactggaaAACAATTCCTTTTTcttgtaaatatttgtaaataagaAAAGAGCGAAGTGAGTAAAAGTGTATTTTGAATATTCTCAATTTTTGAAGTTGAGTTACAAAAACGAAacgaaaaacttgaaaaaaagaatctaaaaacaaacacaaaaaaaagactcGAAAAACGACTGTTTGAATGGCTTTGTAAATTTTGTTCTCTATGGATAAAGACGCAAAATTCATTGTGATTGTTTTCTAAGTGCCGAAATAAAAGATGTCTCTCCACTGTTTGTTACTAGATTATCATACACTTCTCTATGAATATGAATTCTTTTGCACCttctttattattagtattatcatgtttttattgtttggttttttttacagtcacaTTCATTCTTCAGTCTCATTACCATTTTAAATGTTCGGCTACttcattttctttggttcttgcttctttttcttttttgttctttctctctgggTAATTTTGCTGTCTTTATCAAGCTCTCTGTTGAGTATTGATTGGGGTTTGAGTGTTAGCATCagggatggaggaggaggagaatggGAACAGTTTGTGTTGAAGATGTATTCTCCCAGACAAACCCTCCTGAGGTCTCGAGGAGCAGGAATTGGCGTTCCTGCATCCAACAAGGCCACGAGTCCCTGAGCACAAGCGAAAGCTGTACGTCCACATCCTGAAAATCACCTCTGTCTGTCTTGTTCCCCGGTGTAGGGCTGCTCGACTGATGCAGTTTGTGTGAAAATAGtgggaaaatgtatttttttccatattttctgTACCTTAAGATATTACAGATATCATAAGATATTTTCCTTTATGGAACCGACTGTAAAGAGATGATACGGTTTTATTGAACAGAGTTCTGTAGAGATATATAACGTTTAAAAGGTATgaaaagtatgtgttttttgttatttgattgTATCTTTATGAGGTTGAACAATTGAGAGTATGAAAGATCCCCCCAGCATTCCAATTCTAGGCCTTACATTTACACTTGGCTAGAGATTTACAGCTATTAGCATAAGACGTTCACAAAAATGTCTTAACTGCACATGTTTCCTTGTGTCCTTTGTTACATTTGTGATATTTTCCTTTTTGTCGTAATTTGTGTTAAAAAGTCGTCACTTTTAACCACAGCTGACCGAGCCCATGTTCCACAATCACGATCACAGTCTATTGGACGGGCCGGCGGTTGGACGAAACAGCAGCCCTccaaaccttcatttaaaatgcTCTGAAATCACAAAGAGAATGACGCTTGTCTTAGGCAGAGGGTAAAGACCACTGGTTttgggggagggaggggggttTATGATGTCAACAAGCTCTGTCCATGCTTTCCTGTCAATCATCATGGTTGTAGCCTGTATGTTTTGTACGAGTTCAAGTAGTTTCTAATGTGAACCAAAGTGACATCATATTACACTGTAACGCAACCTGTGGCTCTCAACCACCAACGGTGGAGACAAGGATGTCCACCCGGGCTGTAAGGTCACTTCCTTACTGCCTATACCCCCCTCCACACAACTCCTGATTCCAGAATAAGGATGATTTTCAATttgaaatgcaaagaaaaaaagaaaaaatataagaagagaaaaaagagcaaaGTCTATCATAGTGTAGTCTGTAACATTACACCTGAGGGAGActcttattttgtttatgaATATGCTGCTTGGAGTTTCTTAatctttaataaagaaatatgGTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48899 lncRNA downstream 33220 13848974 ~ 13849237 (-) True G36331
TU48897 lncRNA downstream 40546 13836865 ~ 13841911 (-) True G36330
TU48850 lncRNA downstream 49287 13832923 ~ 13833170 (-) True G36300
TU48826 lncRNA downstream 124111 13678796 ~ 13758346 (-) True G36283
TU48800 lncRNA downstream 272521 13587786 ~ 13609936 (-) True G36257
TU48978 lncRNA upstream 113516 14552745 ~ 14569986 (-) True G36396
TU49012 lncRNA upstream 265314 14704543 ~ 14705231 (-) True G36417
TU49028 lncRNA upstream 310324 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA upstream 335452 14774681 ~ 14778395 (-) True G36428
TU49046 lncRNA upstream 346808 14786037 ~ 14786753 (-) False c4h10orf88
XM_007260021.3 mRNA downstream 368219 13508956 ~ 13514238 (-) False dnajc9
XM_007260022.3 mRNA downstream 368239 13508956 ~ 13514218 (-) True dnajc9
XM_022669143.1 mRNA downstream 382280 13477499 ~ 13500177 (-) True p4ha1
XM_022669142.1 mRNA downstream 382280 13477499 ~ 13500177 (-) False p4ha1
XM_022669140.1 mRNA downstream 461515 13391819 ~ 13420942 (-) False LOC103043889
XM_022669155.1 mRNA upstream 126709 14565938 ~ 14616622 (-) False wapl
XM_022669152.1 mRNA upstream 126709 14565938 ~ 14616622 (-) False wapl
XM_022669154.1 mRNA upstream 126709 14565938 ~ 14614773 (-) True wapl
XM_007260030.3 mRNA upstream 346723 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669166.1 mRNA upstream 395223 14834452 ~ 14861783 (-) True c4h16orf62
trnam-cau_20 other downstream 682219 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 684682 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 1170912 12709808 ~ 12711545 (-) True G36074
trnaq-uug other downstream 1213670 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 1214550 12667836 ~ 12667907 (-) True trnaq-cug_2
trnal-caa_1 other upstream 512408 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 512612 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 512875 14952104 ~ 14952216 (-) True trnal-caa_3
trnal-caa_4 other upstream 513079 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 513283 14952512 ~ 14952624 (-) True trnal-caa_5

Expression Profile