RNA id: XM_022669155.1


Basic Information

Item Value
RNA id XM_022669155.1
length 5550
RNA type mRNA
GC content 0.48
exon number 20
gene id wapl
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14565938 ~ 14616622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAGTGAGAGGGCGCGGGAGGGGGCGCACGGATGGAGGCCGAAACAATCGGGGATAAAAATAGAATATGAAACGAATGCCACAATGACATCAAGATTTGGGAAAACCTACAGCCGCAAAGCAGGAGGAGACGGCTCCTCCAAGTTTGATGAGGTCCTTTCCAACAAAAGGGCCACGCTTAGCACCAAATGGGGTGAAACTACCTACAAAGCCCAGTTGGGCTCCAAGAGACCTGGCCTGAAAGTAGATCAGGCCGATCGGAACAAGAGGCCCAAGCTCGTCAAAGATGACGGCTCCGAAGACCCATTTGGCTTCGACAGCGATGAAGAGTCGAAGCCAGTCACTTCTCGAAGTGTGGCACAGCCCAAGGCGTCCTCGGTCAGGCCGGCCGCAACTGATGCACCTAAGGCCAGTCTGACTCTGGAGCCCAATAGCAGGGTTAGCCAACCGGCCAGCATAGAGGCGGTGGCCCCTAGCTGGATGTCACCCAGCCTCAGCACTGACCGGAGCGCCCATCGGGTGCCTGAGGATGCTGGGAGGTTTTTCAGCAGCTCCACAGCAGGTAAGACATACAATTGGTCCAGTGAGAGTACAGATCGTCACAGTTATTCATGGTACAAAAATGCCTCAGAGAGCGACCGCAGACCCCTGGCCCAGACCACGAcattaaaatcagagaaatctgAGGACAAGGACTCTTTCGATGCTTGGAGCGCCGTGGTTGGTCTGGGGGCCCATTCCACATCTCCTCTCACTGTATCTAGAGACCTTCCGTCCAGTACATGGACTGCTGGAGGGTATggacacagcagcagcagtagcttCCAGACCAAACCCCCTGTAGAGACCTATATCGAGGACGTGGGCCAGGGAGACTCGGATGTCCCTGTGGAGCCTTCGCAATCGGAAGACCCCTCTAAGTCACTCCTCAGGGCTTCCAACTGCAGGACGTACTGCAGATCTAACAAAGGCAAGCAGTCCGGGGGGGCGGATGGCTTCGGAAGCGCGCTTGACAGTATCTCGTCAGGTTCTTCGAAGAGTGGCAGCGTGGATGCCGCTGGTAAGACAGTGGGCAGAGGCAGGCCAAGAGACTACACAGTGCTGCACCCTTCTTCTGTTTCTGCATGCAACGTCACCATTCAGGATTCCATAGACCGAGGCATGGAGGAGTTCTCGTCTAGCGCTTCATCGTCAGATCTTGGAGACGCTGGACGGCTGAGGAAGAAAGTGGAAACAGAAACCAAACCTGTCAGTAGGTTCAGACCCACGCAGAACAAGTCCAAGAAGGACAGTAAGCTGGAGCTGTTTGGCTTTGATGACGGAGAGGCTTTCGCTGAGGATGACGACCCGGTCTCCTCTGGCAGATCTAACTACAAGATCAAATATTTCGGCTTCGATGACCTTAGTGAAAGTGACAGCGATGAAGATGAGAGCACTGCTGAGAGGAGGAGGGCCAAGAGGAAGGCCAtggcggctgctgctgctgctgctgctgcggctgcAGCATCAGCCGAGGTTTTAGAAGAGACCAGCATAGACCGACCTCAGCCTACATCTTCTCTGGAGAGCCAGAGCAGCACAGGTCCTCTAGAGGCACCAGAAGCGACCTCTCGCTCCATGTCTGAGGCACTGAAGAAGCCTCAGGAGAAAGCAAAGGAGGGCGGCAGAAAAATCTTCAGCGGACCCAAACGGTCCCCAACAAAAGCTGTATATAATGCAAGACACTGGAACCAACCAGATTCTGAAGAGCTGCCGccccctcctccctctgcaTCGCAGGCCACTCCGgCTGGTCCATCCGGAAGCAGTAAAGAATCAAACTCGCACAAGGGGGACGAAGCAGTGTTCAAAACTCCACCTCTACCACCCAAAGTCATCAAGTCGGTCACCATCCCCACGCAGCCTTACCAGGACATTGTCACAGCACTGAAATGTCGGAAGGAGCACAAAGAGTTGTACACGGTAGTCCAGCATGTGAAACACTTCAACGACGTGGTGGAGTTCGGCGAGAACCAGGAGTTCACAGATGACTTTGAGTATCTGGCAACTGGCCTCAAGAGTGGTCAGCCTCTTAATACTCGCTGCCTTAGTATTATTAGCCTGGCCACACGCTGTGCTCTACCCAGTTTCAGAATGCATCTGCGGGCCAGAGGAAAAGTGGCTCAGGTCTTCAAAACCATCAACGATGCCCCCCAACATTCTaATCTAGCTCTATGCACAGCGTCTCTGATGTACATTCTAAGCAGAGACCGGTTAAACATGGATTTGGACCGGGCCAGTCTAGAGCTCATGATTCGGTTGCTGGAACTCGATCAGGACACGTCCACCGACAACCAACTGTCTTCAAAAGAAATGAataaagtgaaagagaaaatCCGTAAGCTCTGCGAGACGGTTCACAACAAGCATCTGGACCTGGAAAACATCACgacggGTCATCTTGCCATGGAGACGTTATTATCGCTGACCTCGAAAAGGGCAGGAGACTGGTTCAAAGAAGAGCTGCGTTTACTGGGAGGTCTGGATCACATTGTAGATAAAGTGAAAGAGTGTGTGGAGAATCTCAGCCGAGAGGACGATAAGGAGAACCTGGTGGCCTCGCTGTGGGGGGCTGAGAGATGTCTGCGCGTTCTGGACAGTGTCACTGTTCACAACCCGGAGAACCAGGCTTACCTGATCGCCTACAAGGACTCGCAACTCATCGTCTCTTCTGCCAAGGCTTTGCGTCACTGCGAGGAGATGATTCAGAGGTACAGCAGAGAGGTTAGCATGAGCTCGTCTGGGACGCCACTACCCTTCTGCAGCAACAGCAGCGTGGGTAAAGCTGTGGAGGACTGTATGAGAGCCGTTATCGGCGTCCTGCTCAACCTCACGCACGACAACGaATGGGGAAGCACAAAGACAGGTGAGCAGGAGGATCTGATAATCACTGCACTTAACTGTGTTCTGAAGGTTCCTCAGTATCTGCCTCAGGAGCAGCGTTTCGACATTAGAGTTCTGGGTCTGGGCCTGCTTATTAACTTGGTAGAGTACAGTGCCAGAAACCGGCACTGCctggtggagatggagatggatggAGGTGAAGTGTGGAGCTCCATGTGTGTCTCTGACAAGGAGGAGCTGAACACTGAGGGATCCAACAGTGCCATTGCTGCTTTGGTGAAGctgttcctTCAGAGGGAACATGCGGCCAGGCTGGCCGAGACTGAGACAGACGACTTCATCAACGATGTGCCGAAGGCCCCTCTGGACCAGAGCGGAGAGTGGCACGAATCGTCATCAGGGGAGATCCAGTGGGTGGCCTCAGAAAACAACCCCACTGAAGATCAGAAggacaaaaagaaagaggaagaagatgAGGAGCTGGACCTCAATAAAGCTCTCCAGCATGCAGGGAAGCACATGGAGGACAGTATTGTGGCCTCCTATACTGCACTGCTTTTGGGTTGCCTCTGCCAGGGAAGCCCTATGAACGTTAGTACTGTGCGGGAAAACCTTCCAAAGGGAGATTTCTCCATAATGACAGAAATGCTGAAGAAGTTTCTCAATTTCATGAACCTCACATGTGACGTGGGCACGGCGGGGCAGAAATCCATCTCTCGGGTCATCGATTACTTGGAGCACTGCTAGTGCTGGCGCATCAGCAGAGCTCACCTTCCTTCAACAAACACACGTTTGCGCCGGAGCACACACCTTGCTGAACGCACTGGAGAGAAATCCACCCCTGAGAGCACCAGCACTATTAACCCGCCCCCCACCAACCACAAACATCATGGCCCTTTTGACGTTTTGAAGACTCTTTCGATGCTTTGAGATGGCTGATGTTGAATGAAATTCTCctgtttcttctcttttttttttttttcggctaGTATATTTGGTGCAGTCTGCTTAGGCTTCTGTTCTGTcaggttttctttcttttttttttttttgtttcttctctcTATTGGGTTttttgatttccttttttttttttaaattcatacATTGACCGCAGTGCAACAGGGAAAGACTGTCAGAATTCTCCTCGCCTTCAAAAGAACCCATTTTCTTATTGTGCCCTGTAAGAATGTTACTCTGCTATGCTGTGTTTCTCGTTAACCTCTCCATCTCCCTCCCCGATCAATAGTGCTCGCCCAGCCGCCACAAACGATGGATAGCTTTGATCGAGTGCTGCTCTGACTTGCTCGTTACAGACTCTTCGagtctttgccctgtttttcctCTCTCATAAAAATACATGCACATACCTGCAGCagaatctacacagattctccttgttttttattttatcctactttcctgtttttttttttttttttctttttttttttttgtataactgGTGGTGGTAGCTCAGTTTTAGAAGTCTCACCCCATGTACCATGTGTGTCAAAGACCTGGGCATCACGTCCCTAATCTCTTTCAGGGATTTGCGTGATTATAAGCGCATCACTGAGAATTCCCAACagaagctataaaaaaaaaatcacgcaGCATGCTTTCCTTAGTGTTGTATGCAAAGTCAAATGAAAGCTGAAACGTTAAAATCTTAACAAATCGCAAATCCGTTTGTGTTCTCCTGTATTTGAAtgacctcaacacacacacacccaatgTTATTAATGGTATTTGAGATAATAAGCTGAAGTGCCCAGCTCAGTTTTCCTTGTttaattattgttgttattaatttatttcaatgCAAGGGTACATCAAAATATCTTAATCTTAAAGTTACATTTCCATAAAGCACTTGAAGTTGTGTCATCTCTCCACAGGCCAGTTTTTTTAAACCAAGTTCAGACACGGTgtgttcatcttttttttttttcttttgccccATGTTCACGCTTCCAAGTTAATACAAAGACATCCTACAAATATCcacttcatatatatatatgctgtttCTGACAAGTTCGCTACTCTCTCTCGTACAATGCAAAAAGCCCCTGTGCACTTTTTCCATCATTTAAAATTTGAAAAGTCTCCCCTGTTTGGTGAATTTGGAAATTGACTTAGaatagatataaaatattaaatcttaATTGTCTTATTTTACCTTCTTTTCAATTGTATTTCCAAAATATGTATTGCTTTTtctgttagttttttttaatttttttgtttgtctgctGCAGACTGTTCTGCTGGTCCTTGGGCTGATCCAGAAACAGTGGTGTCatcgtgtatgtgtgtgcgtgtgtgtgtgtgtgtttttctctctctctgtcagggCTGTATCCAACACGCTAAACATCCCAATGTTTTTTGAATTAGCAAATTCTGGAATATTAATGGAACCACACAAATGTAcatatttctgtaaatattgGCTATTGGAAATCTAGAATGATAGACTACTTTTCAGAATCcgatcttatttttattttatacagcaTTTTTCTCAGTTGTGTTTGAGGTGAAATTAAAGAGGCATCCAAAGCCAACTGCAGGAACCTGAACTTTGTACCAATTTCAGAAATGATGTCTTTGGTTACTTGTACATAATTTTAACTcgaataaaaattgctactttCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48908 lncRNA downstream 534997 13984417 ~ 14030941 (-) True G36339
TU48899 lncRNA downstream 716701 13848974 ~ 13849237 (-) True G36331
TU48897 lncRNA downstream 724027 13836865 ~ 13841911 (-) True G36330
TU48850 lncRNA downstream 732768 13832923 ~ 13833170 (-) True G36300
TU48826 lncRNA downstream 807592 13678796 ~ 13758346 (-) True G36283
TU49012 lncRNA upstream 87921 14704543 ~ 14705231 (-) True G36417
TU49028 lncRNA upstream 132931 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA upstream 158059 14774681 ~ 14778395 (-) True G36428
TU49046 lncRNA upstream 169415 14786037 ~ 14786753 (-) False c4h10orf88
TU49087 lncRNA upstream 216347 14832969 ~ 14877078 (-) True G36477
XM_022669150.1 mRNA downstream 126709 13882457 ~ 14439229 (-) False grid1
XM_022669149.1 mRNA downstream 126709 13882457 ~ 14439229 (-) True grid1
XM_022669151.1 mRNA downstream 126709 13892907 ~ 14439229 (-) False grid1
XM_007260021.3 mRNA downstream 1051700 13508956 ~ 13514238 (-) False dnajc9
XM_007260022.3 mRNA downstream 1051720 13508956 ~ 13514218 (-) True dnajc9
XM_007260030.3 mRNA upstream 169330 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669166.1 mRNA upstream 217830 14834452 ~ 14861783 (-) True c4h16orf62
XM_022669169.1 mRNA upstream 423912 15040534 ~ 15085022 (-) True med24
XM_022669170.1 mRNA upstream 477982 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA upstream 477982 15094604 ~ 15111090 (-) False LOC103031644
trnam-cau_20 other downstream 1365700 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 1368163 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 1854393 12709808 ~ 12711545 (-) True G36074
trnaq-uug other downstream 1897151 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 1898031 12667836 ~ 12667907 (-) True trnaq-cug_2
trnal-caa_1 other upstream 335015 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 335219 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 335482 14952104 ~ 14952216 (-) True trnal-caa_3
trnal-caa_4 other upstream 335686 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 335890 14952512 ~ 14952624 (-) True trnal-caa_5

Expression Profile