RNA id: XM_022669165.1


Basic Information

Item Value
RNA id XM_022669165.1
length 1920
RNA type mRNA
GC content 0.56
exon number 9
gene id LOC103041103
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14720879 ~ 14775197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGGAGACTGGGCTCAGGACCGGCGCTCCAGCGGTTGATAGCGTAGCGGTCTGCACGCGCTGAGTTTGTGTTCGCTGTTTACGCGCTTCGGTTTTGCACTTTTAGcaggtttttatttgtttgtttgcagttttgcTCCTCACAGCTCGATGATGCTGGTGTTCTCCGCGTGCaccgtgctgctgctgctgagcccCGCGCTGTCCGCGGTGCGCCTCTGCCCGGAGCGCTGCGACAAGTCCGCGTGCCCGCCCGTTCCCGCGGACTGCCTGACCGCAGACACGCTGGACCGCTGCTCGTGCTGCCCGGTGTGCGCGTCCGGCGAGGGCGAGCCGTGCGCCAGCGCGCGCGACTGCTCTGAGGGTCTGACCTGCTCACTGCCCGAGGGCGCGCGCCCTACCACGGCCACAGTGCGCCGACGCGCACGGCTCGTCGGCCTGGGCGTGTGCACGTGCCCGAGCGGCGAGCCCGTGTGCGGCAGCGACGGCGTTTCCTACCGCAACATCTGCGAGCTGAAGAGCGTGAGCGCGCGCGCCACCGAGCTGCAGCAGCCGCCGGTCATCTTCATCCAGAGGGGAGCCTGCGGGACAGGTCAAAAagagaatccagagagcccacGGCACAAATACAACTTTATCGCTGATGTGGTTGAGAAAATTGCCCCAGCTGTGGTTCATATCGAACTCTACCGCAAGATGGTCTTTTCAAAGCGGGAGGTGGCAGTGGCCAGTGGTTCAGGTTTCATTGTGTCTGAAGACGGGCTGATCGTCACCAATGCTCACGTGGTGGCCAACAAGCATCGGGTCAAAGTGGAGCTGAAGTCAGGTGCCACCTACGATGCCAAGATCAAGGATGTGGACGAGAAAGCTGACATTGCCCTCATCAAGATTGATGCTCCAATGAAGCTTCCAGTGCTGTTGCTGGGCAGATCAGCTGACCTGAGGCCAGGCGAGTTTGTGGTGGCTATCGGCAGCCCCTTCTCTCTCCAGAACACAGTGACCACAGGCATCGTTAGCACAACCCAGCGAGGAGGAAAGGAACTGGGCCTGCGCAACTCAGACATGGACTACATCCAGACTGATGCCATCATCAATtatGGGAATTCAGGAGGACCCTTGGTGAACTTGGATGGAGAGGTGATCGGGATTAATACTCTGAAGGTGACTGCTGGAATCTCTTTCGCCATTCCTTCAGACAAGATACGCCAGTTCCTTACGGAGTCACATGACCGGCAGGCGAAAGGAAAGTTACCTatgaaaaagaagtatattggTGTCAGAATGATGACCCTCACCCCAACCCTCGCCAAGGAGCTAAAGGAAAGGCAGTCAGACTTCCCGGACGTCACCTCAGGAGCTTACGTCATCGAGGTCATTCCCAAAACCCCAGCAGAAGTtggtggGCTGCAGGAGAGCGACGTCATCATCAGCATCAACGGCCAGCGGATCACCTCAGCCAGCGATGTCAGCGCGAGCATCAAGAAGGACGAATCGCTCCGGACGGTGGTCCGGCGGGGAAACGAGGACGTCATCCTCACCATCATCCCCGAGGAGATCGACCCTTGACCCTTCTTCACCCCCCCTCGACCTCCTGCTCTACCTTGAGCTGGTTCTCAGTgtgtacaaaaacaaaaacatcgaAAAAACTAAAGAACACTGACTTTTTACAGAGTGCGTGTCTGGAGCCGCACTCGTTTTAGCACGTGTAGTAAATGTCTCCCTGCCTTTAAAACTCTGAAACCCACCTTACTAAAGTATCCCACCCTCTgatacagtttcttttttttgccatcCTGCTGCATCCTTTTCCTTTGGTTAAGCTTCAGTTCCAGTCCTACATTACTACATGAGTTCACATTCAGCCTATTTACACGCACCATTTCATGTGTCCAACAATATAAAACCTAACAACATTCCAGT

Function

GO: NA

KEGG:

id description
K08784 HTRA1, PRSS11; HtrA serine peptidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649877.1 lncRNA upstream 102245 14616723 ~ 14618634 (+) False LOC111192375
TU49037 lncRNA downstream 10853 14786050 ~ 14787301 (+) True G36437
TU49043 lncRNA downstream 18274 14793471 ~ 14794336 (+) True G36442
TU49115 lncRNA downstream 262581 15037778 ~ 15037977 (+) True G36499
TU49121 lncRNA downstream 277845 15053042 ~ 15064113 (+) True G36503
TU49130 lncRNA downstream 302587 15077784 ~ 15081345 (+) True G36510
XM_022669159.1 mRNA upstream 18380 14651651 ~ 14702499 (+) True LOC103046321
XM_022669161.1 mRNA upstream 18380 14651651 ~ 14702499 (+) False LOC103046321
XM_022669158.1 mRNA upstream 18380 14651654 ~ 14702499 (+) False LOC103046321
XM_022669157.1 mRNA upstream 18380 14651655 ~ 14702499 (+) False LOC103046321
XM_022669164.1 mRNA upstream 19520 14651650 ~ 14701359 (+) False LOC103046321
XM_007260031.3 mRNA downstream 23713 14798910 ~ 14822163 (+) True LOC103041718
XM_007260032.3 mRNA downstream 48456 14823653 ~ 14834347 (+) False get4
XM_022669168.1 mRNA downstream 48847 14824044 ~ 14834347 (+) True get4
XM_007255160.3 mRNA downstream 192683 14967880 ~ 14991299 (+) False LOC103032486
XM_007255161.3 mRNA downstream 192929 14968126 ~ 14991299 (+) True LOC103032486
TU48945 other upstream 257240 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2017823 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2154908 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2349917 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 2918675 11801458 ~ 11802204 (+) True G35903
TU49039 other downstream 14183 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 657634 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 2225185 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2225185 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 2227243 17002440 ~ 17018884 (+) False sun1

Expression Profile