RNA id: XM_022669166.1


Basic Information

Item Value
RNA id XM_022669166.1
length 4095
RNA type mRNA
GC content 0.48
exon number 30
gene id c4h16orf62
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14834452 ~ 14861783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTTCCGCGCTGTTCACATGACACTGATTTGAAGATGGCTTCTGTTCAGTGGCATGCTCGTGTGAGGAAATACGGTGCAGAGCTTCAGAGATGCCAATTAGAGGCGACACCAGTGGAGCAGGGAGACTACCATCCCCTCAAACCCATTATAGTGACAGATTCCAGGTCACGACGGGGAGGACGCAAAGGTAGCACGTCTtcatcctcttcttcctccagcTCGGTGGCCATGGACCCTCTGAGCTCCATGATGGAGGGAACAGACCCCCTATCCCTTTTTGCTGCAGCTTCAGCCAGCGAAGTGCCCACACTCTCGCACAGCAGCTCTTCAGTGGAGTTGGGcaggaaacagagagaaaacgagGATGAGGTGGGTGCAGACTTTGAGCCGTGGTCAGCCAAGCGTGGAGAGATCCTGTCCAGATTCACCACTACAGAGAAACTTTCCATAAATCTCTTCATGGGCTCTGAAAAAAACAAGGCCTCCAGTCCCAGCTCTGCTGTATCAGAGAAGGTCCGTACACGTCTGGAGGAGCTGGATGACTTGGAGGAAGGCTCTCAGAGGGAGCTGCTGAACCTCTCTCAGCAGGACTATGTGAAGCGGATTGAGGAGCTTAACCAGTCGCTGAAGGAGGCCTGGGCTTCAGACCAGAAAGTTAAAGCCCTGAAAATCGTCATTCAGTGCTCCAAGCTTCTGTCAGACACCTCAGTGATTCAGTTCTACCCAAGCAAGTTTGTCCTCATCACTGACATCCTTGACACCTTCGGTCGTCTGGTCTATGAACGTATCTGGTCAATGTGTTCAGATCCTCGTCCTCAACCAGACTCTTTCTCTGTGGAGGATGTGAACGACACGGCCAAAGAGACATGCCTTAACTGGTTCTTCAAGATCGCGTCCATCAGAGAACTCATTCCTCGGCTATATGTGGAGGCTGCCATACTGAAATGCAATCGTTTCCTCAACAAAACTGGGATTCAGGAGACTTTGCCAAGGCTGACTGCTATGATCCGTGGGATTGGGGACCCCTTAGTGGCAGTATATGCCCGGGCCTACCTGTGCAGGGTGGGCATGGAGGTGGCCCCTCACCTGAAGGACAGTCTGAACAAGAACTTTTTCGACCTGCTGGCTTCTTTCCGCCAAATTCACAGTGACACAGTGCAGAACCAGTTGGTGATCCAGAGGGTGGAGATCCCAgtctacctcacactctactCCCCTGCCATCCACTGGATCCTGCAGTGTGTGGCCTACAGAGCACCAGATgtgctGCTCACAGAAATGATGGAGAGGTGCAAGAAACTTGGCAACAATGCTCTTCTACTCAATTCTGTTATGTGGGCTTTCCGGCCTGAGTTTGTGGCTGCAAGAGCCACAGATTTCATTGGTATGATCAAGGACTGTGACGAGGCTGGCTTTCCCAAGcacctcctgTTTGGCTCTCTGGGCCGAAGTCTGGCCTGTGCTGACCCTGCAGAGAGTGAGAGGCTGCCCATCCTCAATGAAGCATGGAAGGTCATTACTAAAGTGCGCAGTCCACAGGATTATATCAACTGTGCTGAAATTTGGGTGGAGTTCACCTGTCGTCACTTTACAAAAAGAGAAGTCAACACTGTGCTGGCGGACATCATCAAGCACATGACCCCTGACCGTGCGTTTGAGGATGCTTATCCACAGTTGCAGTCAGTGATGAAGAAGATCCTCACATATTTCCACAACTTCTCTGTGCTCTTCTCCATGGAGAAGTTCTTGCCTTTCATGGACATGTTCCAGAAAGACAGTGTAAGAGTGGAGGTCTGCAAGTCTATCATGGAGGTCTTCATCAAGCATCAGCAGGAACCGACCCGAGATCCTGTCATCCTTAACGCCCTGCTGCACGTCTGCAAGACCATGCATGACTCTGTAAATGCTCTCACGGTGGAGGATGAGAAAAGATCTCTAGCTCTTCTAATCAACGGCTTTATCCGTATGGTGTCGTTTGGCCGTGACTTTGAGCAGCAACTGAGCTTCTGTGTGGAAGCCAGAGCCACATTCTGCAACCTAGAAACAGTTATTATTCAGCTTATTCATACGGTGAACCAGCTAGCTATGGAAACGAAGCGGGTGATGGGAGGCAACCACTCGCGCAAAACAGCAGCGTTTGTCAGGGCGTGTGCAGCCTACAGCTTCATCACTATCCCCTCTCTGACGAGCATCTTCAGCCGCCTCCACCTCTACCTGCTGTCAGGACAGGTAGCACTGGCCAATCAGTGCCTTTCCCaagCGGATGCCTTTCTGAAAGCTGCGGTCAGCATTCTGCCAGAAGTGCCACGCACCATCAGTGTGGAGGGCAAACAGCGCTCTTCTGAAGCCTTCCTGCTGGACTTCATAAACAGCTTCCTATCCACTCTGCTGGTGGTTCCGGACCACCCCGAGCAGGGAGTGTTGTACCTGGTGAGGgggctgttaaacatggtgcagGACTACACGTGGGAGGACAACAGCGATGCTAAAGTGCGAGTGTATATCAGCGCTCTGCCACTTCTGGCTGCCATGAGTCAGGAGAACTATTTGTACACCATCCCTAAAGTGGACTCTAACGAGACGCTGTATGGAGGAGACCCTAAGTTTGTTGCTGAGATCAGTCGACTGTGTGAGACTCTCATTGGTCAGGTGCTGGACCACCTGAAGACCCTCGGACGAGAAGAGggagTTCGCCGGCAAGGCAGCATCGCATTTGCTCTGTTCAGCGTTCTGCTGGCTCATGGAGATCTGCGCAACAACAAACTCAACCAGCTGGCTGTCAACCTTTGGAACCTCAGCCACAAGAACGGCTACTGTGAGACACGAACTTCAGTCCGCACCCTGGAGCATATCAAGCAGCAAGCCCAGCAGCCTGAACTGTCTCACCTATCGGATATGCTGCTGCGCCTTTCCCTGCAGTCACGAGCCTAGAAATGTGGTCTTTACGTGGACCATTACTTGGCTTTATCATCCTCTGGATTCCAGGTGTGCTTTCGATGAGCATTGCTTTCAAAAACAGAAGCCAAGAAAGAATGGACACCATAAAAGTCTCAGTAATCTTGTAAAGACCTAACCGGACGGGATACGTTTCTCAGGGGAggtctgtgaaaaatatgtcacacttctactcagtgataaaactcctgcatccggactgcaattgaaaaaacaggagaaccagtaagtttttaggctttcttggtcacatgacattgttttcagtagctcctccatttccactccctGTTGTgcttacatggatctccgtggaaacatgcgcccaaagtgtaattacggtgcgtggcagtggacaaatagctatttattAAGCGCAAGGTGACGAAACTTAGAGATGTGtgtccggacaggaataaaattacctgaggaccacagagtttagcggaaaacagtaggtaattcagactttaattttctcagagaacgtctgagaaaaacacttacatggtcgttccggacgagaataaaaaatcacagaggaccccctgagaaaaaaaagagaaaaatactccaggaccccctgagaaactaatccgatccagatagggcttaagacttaggattttcattcattaaaaatgaatcaTTTTAACATTCCTAAAACAATAGCAATgccatgaagaaaaaaatgaatagccCAGATTCTGTTGACCAGCCAAGATATGTTCGGTATCTGATGGTGCTTTTTAGTTTAGAATGAGAGAGGTGTTAATCTAAaactaatcttaaaaaatatatatatttgtaattatagtctaaagttttaaaattacaGTGTTTGCCAAACAAATATCTGGATGCCTTTTGAGAGACATATAAACATGAGACTGATGACTTTACATCCAGTGTTTGTTAGCCTACAATCTTCTGTTGTGCACTAAAGAAGCACGTATCAGTTACCACACATCTGGCTGATCGTCTGAATCTGGAATCAGTGATCAATCACAGAAGTTACATTTGTAACAGAATTGTTACTAGTGTTATGTTTAATAGCAACAGCCCATGCATTAACACTTCTAATTAAAGTGGACCTTCAGCACTTCTATGTGTAATCATATATAAAGCACTTTAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49046 lncRNA downstream 47699 14786037 ~ 14786753 (-) False c4h10orf88
TU49028 lncRNA downstream 56057 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA downstream 56057 14774681 ~ 14778395 (-) True G36428
TU49012 lncRNA downstream 129221 14704543 ~ 14705231 (-) True G36417
TU48978 lncRNA downstream 264466 14552745 ~ 14569986 (-) True G36396
TU49167 lncRNA upstream 286620 15148403 ~ 15149356 (-) True G36542
TU49176 lncRNA upstream 338039 15199822 ~ 15200037 (-) True G36550
TU49335 lncRNA upstream 520729 15382512 ~ 15454810 (-) True G36632
TU49314 lncRNA upstream 531228 15393011 ~ 15397037 (-) True G36629
TU49337 lncRNA upstream 545677 15407460 ~ 15412008 (-) True G36634
XM_007260030.3 mRNA downstream 37240 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669155.1 mRNA downstream 217830 14565938 ~ 14616622 (-) False wapl
XM_022669152.1 mRNA downstream 217830 14565938 ~ 14616622 (-) False wapl
XM_022669154.1 mRNA downstream 219679 14565938 ~ 14614773 (-) True wapl
XM_022669150.1 mRNA downstream 395223 13882457 ~ 14439229 (-) False grid1
XM_022669169.1 mRNA upstream 178751 15040534 ~ 15085022 (-) True med24
XM_022669170.1 mRNA upstream 232821 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA upstream 232821 15094604 ~ 15111090 (-) False LOC103031644
XM_007255143.3 mRNA upstream 679317 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 690808 15552591 ~ 15565917 (-) True smarcd2
trnam-cau_20 other downstream 1634214 13200166 ~ 13200238 (-) True trnam-cau_20
trnam-cau_19 other downstream 1636677 13197702 ~ 13197775 (-) True trnam-cau_19
TU48566 other downstream 2122907 12709808 ~ 12711545 (-) True G36074
trnaq-uug other downstream 2165665 12668716 ~ 12668787 (-) True trnaq-uug
trnaq-cug_2 other downstream 2166545 12667836 ~ 12667907 (-) True trnaq-cug_2
trnal-caa_1 other upstream 89854 14951637 ~ 14951749 (-) True trnal-caa_1
trnal-caa_2 other upstream 90058 14951841 ~ 14951953 (-) True trnal-caa_2
trnal-caa_3 other upstream 90321 14952104 ~ 14952216 (-) True trnal-caa_3
trnal-caa_4 other upstream 90525 14952308 ~ 14952420 (-) True trnal-caa_4
trnal-caa_5 other upstream 90729 14952512 ~ 14952624 (-) True trnal-caa_5

Expression Profile