RNA id: XM_022669169.1


Basic Information

Item Value
RNA id XM_022669169.1
length 3606
RNA type mRNA
GC content 0.51
exon number 26
gene id med24
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15040534 ~ 15085022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggaccaatcacagcgcgTGTTACTGTTTCCAGTATGGCGCCGGTGGTAAGCGATTGAATTGAAAAGCAACATTAAATCTAATCTTCAGTCAAAGAATAAAATCAGAATGAAAGTGGTGAACCTGAAGCAGGCCATTCTACAGGCATGGAAGGAGCGCTGGAGCGACTATCAGTGGGCCATCAACATAAAGAAAAACTGCCCCAAAGGCGCCACGTGGGATTACCTCAACCTGGCAGAAGCGTTGTTGGAGCAGGCAATGATCGGACCTTCCCCAAATCCCCTGATCCTTTCCTACTTGAAGTATGCCATCAGTTCTCAGATGGTGTCCTGCTCCAGTGTTCTTACAGCAATCAGCAAGtttgATGACTTCTCCCGAGAACTCTGTGTCAAATCCCTTCTGGAGATCATGGACATGTTCTCTTACTCACTCAGCTGTCAGGGTAAGGCAGAGGAGTGCATCGGCCTGTGCCGAGCTCTGCTGGGCATCGTGGTGTGGCTCCTGCAGGGATGTGCCTGGTACTGCGAGAAGCTGAGAGAACCTGGATTGCTGCCCGCCGGTGAGGCCAGCCTCAGTGCCTGCCAGGAACGTCTGGAAAGCCTTCTGCAGCGGACCAAGAATCGAGCCCTGGTGCACATTGCACGCCTTGAGGAACAGGCCTCCTGGAGCAACGTGGAGCAGGCTTTAATCAAACTGGTGGAGAATCTCAGCAGTTTGAGCAATCAGACGCTGAGCAACAAGCTGGAGGAGTGCATCTCTCTTGTTAAGAGTATTCCTCAGATGGTGTGTATTCAGTGTGACCCTCCAGTGCAGACTACCTTCCCTTCAGTTCACGCATTCATCATGCTGGAGGGGACCATGAACCTGACAGGAGAGACCCAGCCACTGGTGGAACAGCTAATGATGATAAAGAGGATGCAGCGTATTCCTGCTCCTATATTTGTTCTGGAGGTCTGGAAGGCCTGCTTCACTGGACTCATCGAATCCCCTGAGGGAACGGAGGAGCTCAAATGGACCGCCTTCACCTTCCTCAAGATTCCCCAGGTTTTGCTGAGGCTGAAGAAGTATCCACAGGGAGACAAGGACTTCATGGATGACATGAACATGGCTTTTGAGTTTCTGCTGAAGCTCACGCCACTTCTGGACAAAGCAGATCAGAGATGCAACTGTGACTGCCTGAGTCTGCTGCTTCAGGAGTGTAATAAACTGGGCCTGCTGTCCGAGTCCAACACAGCTAACCTTACTGCCAAAAGGTCCGGAGGCTCATACCCCGCGTAGGGGTATGCCCCGAAGCTGAAGACAGCAGAGAATGCAAACATCCAGCCCAACCCAGGCCTCATACTGCGGGCAGAGCCCACCGTCACTAACATACTAAAGACCGTAGATGCGGATCACTCAAAGAGCCCAGAGGGGTTGCTGGGAGTGTTGGGGCACATGCTGTCGGGGAAGAGTCTGGACCTTCTCCTGGCGGCTGCTGCGGCCACGGGAAAGCTCAAGTCTTTTGCTCGCAAGTTTATTAAgttgAATGAGTTCCCCAAACAGATCCCTGGTGAAGGATCCAAAGCTGCATCTGTGAGGGCGCTTCTGTTCGACATCTCCTTCCTCATGCTCTGCCATGTCGTCCAGACATACGGATCAGAGGTCATCCTTTCGGAACCCAGTCCATCAGGGGAGACGCCATTTTTTGAGACGTGGCTGCAGATGTGCATGCCGGAAGAAGGGAAAACTCTGAACCCGGATCACCCCTGCTTCCGGCCTGAATCGGGCAAAGTGGAGAGCCTCGTGGCCCTTCTGAACACTTCCTCTGAGATGAAGTTGGTTCAGATGAAATGGCATGAGATCTGCCTCACCACACCAGCCGCCATCCTGGAGGTTCTGAATGCGTGGGAGAACGGAGTTCTGTCTGTAGAGGCTGTGCAGAAGATCACAGATAATATCAAAGGAAAGGTGTGCAGTATGGCCATCTGTGCCGTGGCCTGGTTGGTGGCTCACGTTCGGATGTTGGGATTGGACGAGAGAGAGAAGCCTCAGACTATGATTCGGCAGCTCATGACTCCTCTGTACGGAGAAAACACCCTGCAGTTTTACAACGAACGCGTGGTCATTATGAGCTCCATCTTGGAGCACATGTGCGCAGACGTGTTCCAACAGACTGGTGTGTCGCTGCGTCCAGCCGTAGAAGGTCAGGAGCCAATCCCCTACCGGAGCCTCCTGCCTGCCCGCCAGCCCATCCGTCAGGCCCTGCAGGCTCAGTTCCGCCAGGTTCTGGATAAAGGTTGGGTGGATTCACGCACACTGCACCTGCTTGAAAGTCTGATGCACATGGGTGGAGTCTTCTGGTTCACCAACAACCTTGTAAAGGAGCTACTAAAAGAGACTCGTAAGGAGTGGGCGATTCGTGTGGTGGAACTCCTCTACAGTATATTCTGTCTGGACCTGCAGCAGGTCACTCTCACATTGCTTGGTCACATTCTGCCAAACTTGCTAACCGACCCCGCGCACTGGCACATCCTGGCAGACCCACCGGGGAGAGCCCTCGCCAAGTTGTCTGTGTGGTGTGCTCTCAGCTCCTACTCGTCTCATCATAAAGTCCACACCTTGGCTCGGCAGCGCAAAAGACAACGAGAAGATATCGAGGACTATAGCAGCCTGTTTCCCCTGGATGATACGCAGCCCTCCAAGCTGATGCGTCTGCTGAGCTCCAACGAGGATGAGCCAGTGGTGTTATCCAGTCCAGGTGACCGGACGATGAGTAGCTCACTTTCAGCCTCGCAGCTTCACACTGTCAACATGAGAGATCCCCTCAACCGTGTTCTAGCTAATCTGTTCCTGCTGATCTCCTCCATCCTGGGGTCCAAGTCTGCGGGTCCTCACACTCAGTTCGTGCAGAGCTTCGTGgaagagtgtgtggagtgttctGAGCAGGGCAGCCGCGGCAGCATTCTGCAATTCATGCCTTTCACTATGGTTTCTGAGCTGATGAAGCTGCACGCTTTGGCTAAACCTAAAGTCGTCCTGTCCATCACGGATCTGACTCTTCCTCTGGGCAGGAGAGTGGCAGCCAAAGCTATTGCTGCTTTGTAGtatggatacacacacacacacacacacacacacacacacacacacatacacatactagCCTTCTTCATTTCTTCAGTGAGCGCAACCTTCCTGTTTAATCCCAGACAGGCATCTCTACGCACCCATTTAACATGCACTCAGCTGCGTCCAGCATTTGGTGGAACGGCCTGTAAATCAGATcagataaaacagagataaagacaCACATGTTCAGTGGGAGTGGATCTTACCTGCACTTGCcttaaagcaattttttttggCTTATATCCAGCGTTCCTATGAAATGCAAGAGGGGTTTCCagtaaagcgttttttttttttttcatccccaATGACGGTGCATAAAATGTTAATTCTCAGTTGGTTCTGATTTGAAGGATGTGGTCGCACTTGTGAAATGAGCTgcgtttcatgtttttttggcaACAGCAGGTGTTTACCGTCAACCAGAAGAAGAAACTGCAAACTGTTGGAtttttgtatataatatttctgtttttgtacTCAATAAATCAtaagaaat

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0046549 retinal cone cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048538 thymus development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15167 MED24; mediator of RNA polymerase II transcription subunit 24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49087 lncRNA downstream 163456 14832969 ~ 14877078 (-) True G36477
TU49046 lncRNA downstream 253781 14786037 ~ 14786753 (-) False c4h10orf88
TU49028 lncRNA downstream 262139 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA downstream 262139 14774681 ~ 14778395 (-) True G36428
TU49012 lncRNA downstream 335303 14704543 ~ 14705231 (-) True G36417
TU49167 lncRNA upstream 63381 15148403 ~ 15149356 (-) True G36542
TU49176 lncRNA upstream 114800 15199822 ~ 15200037 (-) True G36550
TU49335 lncRNA upstream 297490 15382512 ~ 15454810 (-) True G36632
TU49314 lncRNA upstream 307989 15393011 ~ 15397037 (-) True G36629
TU49337 lncRNA upstream 322438 15407460 ~ 15412008 (-) True G36634
XM_022669166.1 mRNA downstream 178751 14834452 ~ 14861783 (-) True c4h16orf62
XM_007260030.3 mRNA downstream 243322 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669155.1 mRNA downstream 423912 14565938 ~ 14616622 (-) False wapl
XM_022669152.1 mRNA downstream 423912 14565938 ~ 14616622 (-) False wapl
XM_022669154.1 mRNA downstream 425761 14565938 ~ 14614773 (-) True wapl
XM_022669170.1 mRNA upstream 9582 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA upstream 9582 15094604 ~ 15111090 (-) False LOC103031644
XM_007255143.3 mRNA upstream 456078 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 467569 15552591 ~ 15565917 (-) True smarcd2
XM_007255140.3 mRNA upstream 487758 15572780 ~ 15580758 (-) True LOC103026640
trnal-caa_19 other downstream 83777 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 84184 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 84590 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 84996 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 85197 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 670591 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 670591 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 670591 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 673368 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 752083 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile