RNA id: XM_022669201.1


Basic Information

Item Value
RNA id XM_022669201.1
length 8451
RNA type mRNA
GC content 0.54
exon number 27
gene id jmjd1c
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16538181 ~ 16713489 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAGAGCGAAAAGAGCGAGTGTGTGCGGGTGGAGGctgaaaacagatttaaatcCCTCCCCGGGTTGCGGTCGATACGgcgagaaaaagggaaaaagggcaaaaatactctctgtttttttttctttttctctttatttcgtTTGGTTCCATCCACCGTTTTCATGCCCGAACGGTAAGGCATCGACGCTGAAGTTTTCCGAGGGGTTTTTCACTCTCCTGTGAAAGGCCATGGCGGGGGAAGCGCGGCCAGAGCTGGTGGGGAAGCGGTTCCTGTGCGTGAGCGGCGAGGAGCCGCTGGAGCTCTGCAACATCGGGCGCTGGGCTTGGAGAGCCGGAGTTATCCGCGCAGTCAGCCACCGAGACAACGACAACCCAGAGCTGACGGTGTATGTGGAGTTTGACGATCTGGAGTGGGAGAAGCGTGAGTGGGTGAAAGTATACGAGGATTTCCGGATCTTTCTGTTGGAGCAGCAGCTCGTCTGGGCCAAGAGGAAGGAGGGTTCTCAGCTGCAGGTGACCCGTGCTAAGCAGATCCAGTGGCCCACTCTGACCTTTAAGCCTCTGGTGGGGAAGAGTGTGCTGGGCTCCATCACTGCTGTGGAGTTTTTCTCTGACAGACAGCTGGAATTCCTGACAGACGACGGAGCATTCCAGCCCTATCAGGATGAAGTGGACAGCTTGAGTCCTGTTCTCAGGGACAATCCACAGCTTCATGAAGAAGTGAAAGGCTGGGTGAAAGATCAGAAGGTGCAGGAAATTTTTATGCAAGGTCCCTATTCATTAAATGGATACCGCGTACGAGTTTACAGACAAGACTCAGCCACCCAGTGGTTCACAGGCATCATCACTCACCACGACCTCTTCAGCCGCACTATGGTCGTGATGAATGATCAGGTACTAGAGCCTCAGAACGTAGACCCCTCTATGGTACAGATGACCTTTCTGGACGATGTGGTGCATTCTTTGCTAAAAGGAGAGAATATCGGTATCACATCCAGACGCAGGTCACGCTCTAGCCAGAACAGCAACACTGCCCACGGTCATTACACACGCGCCCAGGCCAACAGTCCCAGACCAGTGATGAACTCGTCTGGCTCCACCCCTAAGCAGGGCTCTCAGGCCCAGCAGCAGCAATCTCAGCATGCTCAGCAGCAGCTATCCCAGCAGcaccagcaacagcagcagcagcagcagtcatcGCCGGGCCAGCAGCGTGGTTCCCGGTCATCCCGCAGGAAAGGTTCAGACAGCAGTGTCCCAGATGATGAAAAGATCAAGGAGGAGAAGATGGACACTGGAGGAGGAAAGGGAGATTTTTCTAGGAATAAATCAAAACAGATCATGAGCAAGCGGAGGAAAgctgaggaggaggaaaaaaagagcgGTCTAAAGCGGTTAAAGACTGAGGCTTCCGACCTGTCTGAGAGCAGCGACTCTGAGAACTCAAACAAGAGGCTTTTGGACTCATCATCCGAGCCAAGTTCAGAGAACGAGCTAAAGGTAAAAAGCGCTTTGAAGGCCAGCGAGGAAGACGAGGAGAAGCCCCAAGTCTGCAAGGTTCTTGAGGAACCAGCCGCCATCAGTAGGATTTCTCCCTGGGAGGAAATACAGTCAGTAGATAAGAGCAGCAGCAAGTTAGTGACCATGGAAGGGGTTCAGACAACGGAAAATGAGCGTCTGATTGAGAAAAGGTTGCCGGATGAAAGGCGGTCTCCTCTGCCCCCTTCCAGCCAGCCCCAGAGTTCAAGTCCTTCTGAAGTTCAAGGCTGCATTGTGGAAATGAAAAGCACTGTGAAAAATATGTCCAAGGACCATTATGGCACAGGGGCACCAAGGACGCAAACCCCCAAGTGTGTAATTGACATCACAGATGATGTTGCCACATCTCACCCAAGTTCCCGAGAAAGCTCAGAGGCTGTGTGTGCCCTGTTAGCCTCTCAAAAGTGTGAGGCCTACAGCTCTGAAACTGTAGAGTGCAGGAAGCCGGAGGCAGAGCCACAGCAGCTATTCCGAAGCTTGGGCAACAAGATCGAGTTTGCCCATTCTGAGGTCATCCGGCCAGTGACATCAGTCAGCGAGTCGGCAGCTGTGGCGGAGAGGGAGCGGGAGAAGGCACAGGCACAGGAGCAGTATGCCTCCATTGTGCCTTGCATTAAGAATACAGCATTAGCTGAGGAAATACGGAAGCCGCACAAGCTTAGCCCTTCACCCGACGTGGCTAAATCAAAATCCGACCCCTCGCCCGACACACTGAAGTCCCTGAAGCGCAACCCATCGCCTGATGCCATGAAGTCCAAAACCCATGGCGTCTTGGAAGCCCTGAAGCCGAAGCCAAACACATCCCCGGAGGTCTCGAGTGGGACGGCCCATTTCCAACAGGAGTCTGACTCCGCCCCCCGCTCCGGCTTTAAGCCCGTGCCGTCCACCAAGAGCCCGCTCATCATTGACAAGAACGAGCACTTCACTGTATACCGGGATCCGGCACTGGTGCGGCCAGAAACTGATAGCAATCACGTGGCTTACCTGCCCCCTCACTTGCACCCGCTTCATAGCTCCTCCCACGCCACCTGCCTGACGCCTGGCTCGCACCACCCCTCCCACCTTCTGCCCCCTACCTCCAATCTCAGCCCCCACCCGCACCCTTCGGTACATCACCCGTTGCTCCCCACTGTGTTGCCTGCAATGCCCCCTGCCTCTCTGCTGAGTGGCCACCCCCGTCTGGACTCGGGTGGCCTCAGCCACCTTGCCCTGGCTGCCCACCACCCACATCCCcaccagcagcaacagcaattcctgcagcagcagcctcctcctcctcctctgatgCCCCAGACACACGCCGGAGGCTCCTACAACCACCTGGGCCTCTACCCCATCATCTGGCAGTACCCCAATGGCACACACTCATACCCACCTGGTCTCGGCTTGCCGGGGTCAAAGTGGGTGCATCAGGAGAACGCTGTCAACTCAGAAGCCAGCCTACGAAGGAACACCCCCAGCCCCTGGCTCCATCAGCCCACCCCCGTGACCTCGGCCGATAGCCTGGGGATTCTGAGCCACGTCCCAGGTCGACCAGCCAGTGCCGAGACACATCGGCCCATCAAAATCAGCTCACACCCCAGCCCACCACTCTCCAAAACCTCTACAGATCACCATAAAGAGGAGCTGGAGAGCAAGGTGTTTGTTGACCCCATGCGTGGCCTGGTGACGGCCCACTTAAAGCAAGAGCCAGACCGCAGTCGGACTCCTACCAGCAAAGACCTGCCACGTCTTTATATGGAGTCGACCCACCCTAAGCAGCAACAACAGCCTTCTCGTCTGCCTATGGACACACCTGACCGGTCCAGCAAGTACAAAGAGGAGAACCGGCGCATTTTGCAGGAGAGCAAAGATGTAGCTCCATTCACGGCCAAGATCCGGCCTGGTGAGCCTGAGCGTGAGCCTTATGCCCGAATCCCCTCACTTTCTAAAGGGCACGAAAAAGAGCCTGAGCATCCGCCCTCCGAGCTTTACAAGTATAAGCACTCTGGAGCGCAGTCCCTTCCCCAGAGCAACTATTTCACCACCTTGTCTAACAGCGTGGTGAATGAGCCCCCTCGCCTGTACCCCTCCAAAGAGCTTAACTCCCTGTTTGAAAAggcacctgcttcctccagccCTCTAGGCTCCTACAGCAGCGCAAAGTCCCTGTCCAAGCCTCCCCCACTCATCAAGCACCAGCCAGAGGGTGAGGGCCTGGTGGGAAAGATTAGTGAACAGCTCAGCCAGCAGGTGGCCATGCACTCACATAGTACCTCAGTAGTGGCAGCAGCTGGCGACCGTCGCAGCCCTGCCGTCTCGCCCTCGGGCCAACTCAGGAGCATGCCCGCCCTGCACCGGGCACCCGTCTttcacccacccacccagcagACACTGGACCGCAAGGAGACTGGGTATGGCCGCCTCTCACCTCCCACACTCACACCCATCCAGCCTGTTAGCACGGCAGCAGGGAAGgcatctgaacagcaaaagCCGCCAACCCTGCTGCCTGAGCTCAGGGAGGTGAAGGGTGGGGTCGAACAGGGTGAGCCATGGAGGCCCGGCTCTGATCCTCAGGCCCAGTGGCATCAGGACAAGAGCAGAGGGAAACCACAGGCAGCTGTGGCGTCTGTCATCGTCCGCCCATCCACATGTATCAAGTATGATGGCTCACCAGGGCCTAAACCTGCCAACAAGGAAGTGACCGGTGGCAGGCCGTCGCCCTCGGGCAAGAACCCTGGACAGATAGACAGCCCCAAACCGGTTGAGGCCAGGGACAGCGTGAGGATCATCCAGTCCAACGCGAATATGGAAGATGTATTCTCGCAGTATAGGCAGAATTTCATTCGAGCTTCTCAAGGTGGTTTTCCCAGCTCTGTGGTGGCCGTTAATTCTGTGTGCAATAGTAGAACTGATATAACCCCTTCCACCACCACTTTCAGTGTGCTGAGTCGAGGCACACCTGAGCCACCCCATTCTAGCTTGAGCACccctagcagcagcagcactagcattagcactagcagAATAGAGAATTCCACGTCCAAATGCAGGACACCCACTGGTCCAGAGCTCCAAGAAGGTGGATCCAGAACAACCTCTCCTGGAACCTTGGTGCCTCAGGCTTCTCAGGCTTACTCGGGTAGCTTCATGCACCCCAAGAAGCACAAAGCGGCTTTAGCTGCTGCCCATTCCCGTGGCTCCAGCAGTGCCTCCGAGAGTGAGAGCAGTGGCCGATCCACTCAGGATTCACCCACCATTGCGGTCCAGgagaactccagcagcaaaGCTAGTCCCCTTCCCAACGGTCAACCGCCGCCCATGAGCCAAGCCCCCTTCCACAAACTGAAGAAAGCGTGGCTCACTCGTCACTCAGAGGAAGACCGAAACACAAACAAAGCAGAGAAGACAAGCGTAAGCTCAGTCTCTGAAATTATCAAGCCATGCTCGGTCAACCTAATAGCATCCACCTCCAGCGAAGCGGATCTAGGCAAGGACAGCAAAGGTTCCGAGGACAGCAAGACTTCCCAGGAAGACAGGAAGTCGAGACGAGGCACAGCCAAGCGGGCGTACGAGTCGGGTTCAGACAGTGCTGACGACTCGGATGCCAGCGACAGCAGGCTGGAGCAGAGGACTAAGCGGCAGCCCAAGCCTACATACAAGAAGAAGCAGAACGACATGCAGAAACGGAAAGGGGACGACAAGGAAGAGGACGATGTCAAGCCCAACGGTATTTTCAGGAGCGCTAAGGAGAAAACCAAACTCAAGCTTGCCAGCAGCAatggTATCCCTCGCTCTGTGCTGAAAGACTGGAGGAAGGTGAAGAAGTTGAAACAGACGGGCGAGTCGTTCCTCCAGGATGACGCTTGTTCTGAGATTGGGCCGAATCTTCAGAAGTGCCGCGAGTGTCGCTCCATTCGCACCAAGAAAGGAGAAGAGTCCACTCATTCGCCGGTCTTCTGTCGCTTCTACTATTTCCGCcgTCTTTCCTATAGTAAGAATGGAGTGATCAGGATTGATGGCTTCTCTTCCCCTGACCAGCATGATGAGGAGGCACTGAGTCTCTGGGCTCCTGATACAAGTGAGGAAAACGATCTGGACCTGGAGACGTCCAAATACATCCTCAGTTACATTGGAGACAAGTTCTGCCAGCTGGTTATGAGCGAGAGCACTGCGGCCACGTGGATCAAGAAAGACGCCAAGATAGCGTGGAAGCGGGCAGTGAGGGGAGTGAGGGAGAGCTGTGATGCATGCGAAGCCACACTGTTCAACATCCACTGGGTCTGCCAGAAATGCGGATTTGTGGTGTGCTTGGACTGCTACAAGGCGAAGGAAAGGAAGAGTTCCAAAGACAAAGAGCTGTACGCCTGGCTGAAGTGCGTCAAGGGACAGCCGCACGATCACAAGCACTTGATGCCAACGCAGATAATTCCAGGAACCGTATTGATGGACCTGGTCAACAGCATGCACATGCTCAGGGAGAAGTATGGCATCAAAGCGCACTGTGCTTGTGTCAGCAGCAAGAACATCCTCCACAATAAGCTCCCGTCCACAAACGGCATCTCGCAGGTGCTCCAGAACGTGCTGAACCACAGCAACAAGCTATCTCTCTGTAAGCCTGAGAGTGGGCAGCACAACCTGCCTCAGAAGGTGGAGGCTAATGGAGGCAGCAGCCCTGCCAGTGACACAAGTACAGACAGCAAGCTCACACCACCCGAATCTCAGTCTCCGCTACATTTCCTGGCCGACCTGGCCGAGCAGAAGTCCCGTGAGGAGAAGAAAGagaATAAGGAGTCGTGTGTGGGAAAGgtgaaggaggagaaggagtCTGAGGCTCTGGAGGCACTGCACTGTAAAGCTTCCTCTCTGGTAGCCAACAGCACCGAGCAGGGCTCCACACTCAGAGACCTGCTCACCACCACGGCTGGAAAACTGCGCCTGGGCTCCACCGATGCAGGCATTGCCTTCGCTCCGGTTTACTCCACAGCTTCACAGACGGGAAAGAGCGGCCGCACCATGCCGAACATCCTGGATGACATCATCGCCTCGGTGGTGGAGAACAAGATCCCGGCGAGCCGCAGCTCCAAGCTGAACCTGAAGTGTGACCCGCCAGAAGAGGCCCGGGTCGAGCGGAAAAAGCCAGTCGAGGAAACGCCCAAACACCCCGACATCCCCCACTGCTGGCTTTATGAGCGCAGGCTGCTCTGGCTCAAAGACCATCGCAACAGCAACAACTGGAAACTCTTTAGAGAGTGCTGGAGCAAGGGCCAGCCCGTGCTCGTCTCAGGGGTACACAAGAAGCTCAACGCTAGCCTGTGGAAGGCTGAATCTTTCAACCAGGAGTTTGCTGACCACCAGGGGGACCTGTTAAACTGCAAGGATGGTGTGGCTTCTAACTCTGGCATCAAAGAGTTTTGGGACGGCTTTGAAGACCTTACAAAACGGCCAAAATCCAAAGATGGAGAGGCCATTGTGTACAGGTTAAAAGACTGGCCCTCAGGTGAAGAGTTCATGGCTCTGATGCCCTCTAGgtACGATGATCTGATGAAGAATCTTCCTCTACCTGAGTATTCAGACCCAGAGGGAAATCTGAACCTGGCCTCCCACCTCCCCCCATTCTTTGTTCGGCCAGATTTGGGTCCGCGCCTGTGCTGCGCTTACGGTGTGGCAGCGTCTCAGGAGCAGGACTTTGGCACTGCTAACCTGCACATGGAGGTGTCGGACATCGTCAGTGTTCTGGTTTACGTTGGAGTGGCCAAAGGAAACGGCGTCCTTTCAAAAACAGGAGTGCTGAAgaggctggaggaggaagaCCTGGATGACAACATGAAGAAGAGATTAAAGGACTCAAGTGAAACTCCTGGAGCTTTATGGCACGTCTACGTGAGCAAAGACGTGGAGAAAGTCAAAGAGTTTCTGCACAAGATTGCTAAGGAGCAGGGTGTGGACATCCCACCAGAGCATGATCCAATCAGGGAGCCGGGCTGGTACCTGAGCCGAAAGCTGCGTCAGCGGCTGCTGGAGGAGCACGGTGTTCAGGGCTGGACCATCGTTCAGTTTCTGGGAGACTCTGTCCTCATCCCCGCTGGAGCCCTGCACCAGGTGCAGAATCTGCACAGCTGTGTGCAGGTCATCAATGACTTTGTGTCTCCGGAGCACGTGGTGCACTCCTTCCACTTAACCCAGGAGCTCCGCTCCTCCAAAGAAGAAATCAACTATGAAGATAAGCTACAGgTCAAGAACATCTTTTACCACTGTGTAAAGGATGCTGTGGGAACATTAAAGCGGTGCAGTGCAGAGGGGCCGGGGGACGAAGGCTCCAACTCATGACCTTGGACCCCTCGTTGCCGTTGGAACGCCTTCATCACTTAACCCCAAATATGCACACTAATCTCCACATCACAAACCTCCAGTGCCAAGCAGACTTTCAGAGCAGACGcctgagagaaagacaggaaaTGCTTTATGTTACTGACACCACAGCAGTATCGCCCCCACGCATCAGGattactgtgattttacagAGGAATAACAACAGATCATCTGCAAGCTACAGCACTGCTGTTCACACTCTAGTATTTGTTTGTCTTTGCCAGTTTGTTTCCTTCGTTTTTGTcgtttccttctttttttgctttcatactgtatattgtttcAGTGaaatgatgtatttattttttaggagTTCTACGCTATGTTCTAGATCAAATGTAAATGTGACTTGTACAGTTTGCTAATCGTACAGGATCCTAACGCAGCTCACTACATTTGAGACGGTTACTGTGAGAGAGGATCCGAACACCAGCTATTGCCTGTACTTTGGGAATCGTTGCTGAAATTGCAGTCCTCATGCCatatctttaaaaagaaaaaaaaaagttttaactgCCAAACTATTGTAAACATTGTAAAGTTATATTATGTAAA

Function

GO: NA

KEGG:

id description
K11449 JMJD1C; jumonji domain-containing protein 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49647 lncRNA downstream 49589 16487035 ~ 16488592 (-) True G36845
TU49637 lncRNA downstream 132698 16405253 ~ 16405483 (-) True G36836
TU49604 lncRNA downstream 291410 16246540 ~ 16246771 (-) True G36807
TU49603 lncRNA downstream 291651 16246079 ~ 16246530 (-) True G36806
TU49602 lncRNA downstream 294848 16243077 ~ 16243333 (-) True G36805
TU49748 lncRNA upstream 29343 16742832 ~ 16752168 (-) True G36922
TU49790 lncRNA upstream 200081 16913570 ~ 16913803 (-) False LOC103043629
TU50115 lncRNA upstream 286883 17000372 ~ 17015898 (-) True G37185
TU50119 lncRNA upstream 307232 17020721 ~ 17020928 (-) True G37189
TU50116 lncRNA upstream 312968 17026457 ~ 17026942 (-) True G37186
XM_015607335.2 mRNA downstream 54036 16463328 ~ 16484145 (-) False egr2
XM_007255117.3 mRNA downstream 71033 16463328 ~ 16467148 (-) True egr2
XM_007255123.3 mRNA downstream 329267 16196413 ~ 16208914 (-) True LOC103021447
XM_022669187.1 mRNA downstream 512059 15874359 ~ 16026122 (-) True ank3
XM_022669186.1 mRNA downstream 686504 15841393 ~ 15851677 (-) False LOC103023209
XM_007255111.3 mRNA upstream 77138 16790627 ~ 16793507 (-) True LOC103044660
XM_022669208.1 mRNA upstream 85028 16798517 ~ 16866094 (-) True exoc6
XM_022669207.1 mRNA upstream 85028 16798517 ~ 16863401 (-) False exoc6
XM_022669206.1 mRNA upstream 85028 16798517 ~ 16863401 (-) False exoc6
XM_022669205.1 mRNA upstream 85028 16798517 ~ 16863401 (-) False exoc6
TU49443 other downstream 697696 15837105 ~ 15840485 (-) False LOC103023526
TU49397 other downstream 768652 15755613 ~ 15769529 (-) False G36677
TU50113 other upstream 302639 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 381756 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 465889 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 660695 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 719483 17432972 ~ 17466024 (-) True G37290

Expression Profile