RNA id: XM_022669210.1


Basic Information

Item Value
RNA id XM_022669210.1
length 7455
RNA type mRNA
GC content 0.45
exon number 54
gene id LOC103036473
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16945064 ~ 16998115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGCTtctaaataaagaattaaacgGTGTTAGTGTGTTTTCCTGTTCACTAATACGGTGTAATTGTGAGTTGTATTGGTGCAGGTAGGCTCAGTGTTGGGGAAATGGGTGGAAATCCACACCCTCAGTTAGATCAGCCACACCAGCAGAGTTCCTCACTGAACTGAACTCAACACACTTCACTGTGGAGAAGAGGAGCTGCAGCAGAGTTATGACTGGATAAGAGACAGACTGCAGTCATGCTGCGTGTTGTTGTTGAGTCCGCCTCAGGACTCCCCAAGAAGAAGCTTGGAAATCCAGACCCCATCACTTACATCCTCTTTAAAGGTGAAACAAAGAAAACTCGCTCCATTAACAGTGAAGTCAACCCAGTCTGGAAGGAGacaCTTGAGTTTGATTTGAAGGGTTCCCCTCTCGATTCTTCTTCCTTCATTGATGTGATTGTGAAAGACTTTGAGACTATTGGAAAAGACAAGTTAATAGGATCAGCTAAAATCTATTTGAAAGATCTTGCAAGTGGACAAGCAAAGTCACTCCCTTCCAAAAATTTGGCTTTGCTCGGTGACAGTGGGCAAAATATTGgaGGCACTATTGACCTGGTTATTGGATATGAACCCCCAGCCAATTCTGCTCCCAACCCAAACGATCAGCCGGATGGGGAAGGAAACACAGGTGGTGTTgatggaggagatggaggagacACCACTGATATTGGGGGTGTACCATCCTCCTCTCAGCAGAACCAGAGAGTTCAGTGGAGGAGCAGAAAACAGCAGCGGCCTTTATCCAATAAACCTCAGGACTTTCAGatCCGGGTCCGAGTTATCGAGGGGCGCCAGCTGCCGGGAAACAACATTAAGCCTGTAGTCAAAGTAAACGTTTGTGGAGAAACTCACAGAACTCGCATCAAAAGAGGAAATAATCCATTCTTTAACGAGattttcttttacaatgtcCACATGCTTCCCTCAGAACTCTTCGATCAACACGTCAGCATAcggGTGTATAATTCATCCTCCCTCAGAGCTGACAGCCTCATGGGAGAATTTAAGATTGATATCGGCTACATCTACGATGAACCAGCTCACTGTGTCATGAGGAAATGGCTGCTCCTAAACGACCCGGACGACTCAAGCTGTGGAGCAAAAGGCTACCTCAAAGTCAGCGCATTCATCGTGGGGACAGGAGATGATCCTCCgGTAGAGAAAACGGATCGAGACACTGATAGTGATGATGTGGAGAGTAACCTTCTGCTACCTGCTGGAATCGCTCTGAGATGGGTCACCCTGCAGTTGAAAGTGTTTCGTGCTGAGGACATTCCCCAGATGGACGACTCCATTTCCCAGTCATTAAAAGCTGCTTTTGGTGGGACGGGTGATAAAAAGAATCTAGTGGATCCATTCTTAGAAGCCTGGTTTGCTGGCAAGAAGATTTGCACAAAAATTATTGAGAGCAACGCAAACCCTGAATGGAACCAGTTGGTTAATCTGCATGTTAAGttcCCATCTATGTGTGAACGGATCAAATTGACTGTGTATGATTGGGATCGTCTGACGAGGAACGATGCTGTTGGCACTACGTACTTAAATCTGACCAAGATAGCGTCCTCTGGTGGAGAAGTGGAAGAGGATCATCCAGGACATGAGTTACCAGGAAATGAAGcAGAAACAGGGGAGCCTGATGTTGGCTTTCTTCCAGCTTTTGGACCCAGCTATATTAACCTGTATGGCAGCCCAAGAGAATTCACTGGCCTTCCTGATCCTTATGAAGACCTCAACTTTGGAAAGGGAGAAGGAGCAGCATACAGAGGGAGAGTTCTAATTGAGCTTTCTACTAAACTGGATGGCAAGGCAGACACAGATGTAGAGGCAATATCAAATGATGACATCTTGGTTGCTCAgAAATACCAGCGCAGGAGAAagtactgtctgtgtgctgTGTTTCACAGTGCCACCATGATCCTGGAACCCGGTGAGCCTATTCAGTTTGAAGTGAGTATCGGCAATTATGGCAACAAGCTGGACTCAACCTGCAAACCTCTGGCTTCAACCACTCAGTACAGTTGTGCTGTGTTCGACGGtaaccactactactacttgcCCTGGGCCGACACCAAGCCTGTTGTAGCCATTATGTCATTTTGGGAGGATATCAGTCATCGCCTCGATGCTGTTAACATCATTCTCAACATAGCAAACCGCTTGGAATGTAACATCACTGAGCTGAAGACTGCAGTGCAGGCTAAAGCCCCGGACTTAAGACTGGCAGAGATTTGGCAAAAGCTTGTCAGTCAGGTGCTGGAGGACATCAGCAGCTTGTAGTTCTATTTCCCCACAATTCATCACACTAATCTATTTTTACTCAACATCTTAAATGAAACAgcattaaaactgtttttatatgtatcatATTGCATATTCTGCATTACATGGACTCTACACATGTTCCCGCAGCCTCAGAACAGCATGCCTGATGTGATTATCTGGATGttgagaggagagaagagggtGGCCTACAGCCGGGTCCCGGCACATCAGGTTCTGTATTCAGTTTTGGGCGAGCAGGCCTGTGGACAGTACTGCGGAAAAACACAGACAATCGTCCTGCAGtaccCCATGGACAAAAACAAGGGTTCCAAGCTTCCTGCTCAAGTCCGAGTGAATATGTGGCTGGGATTATCCACACATGAGCAGAAATTCAATGCGTTTGCTTCGGGACTGTTCACTGTTTCTGCAGAACTGtatgAGAACCAGGCGAAGGTGCTGGGGAAGTGGGGCACCACGGGTCTGTTGAATCGCAGCAAGTTCTCTGATGTCACTGGAAAAGTGAAGCTCAAGCATGAGTATTTTTTGCCCCCTAGAGGCTGGCAGTGGGAGGGGGACTGGATGGTGGAACCACAAAAAAGtcTGTTAACAGAGGCTGATGCGGGGCACAGTGAGTTTGTGGATGAGGTGTATGAGAATCAGACGCGGTTCCCTGGAGGAGAGTGGAAAGATGCTGCAGAGCCTTACACAGATGTGAATGGAGAGAAATCCCATCGCCCAGACGAGCTGGAGTGCCCTCCTGGATGgaaatggatggatgagtggacCTTCGATGACAAACGGGCTGTAGATGAGAGAGGTTGGGAGTATGGCATCACTATTCCTCCTGATGATAAGCCTAAGTCATGGGTGGCAGCTGAGAAGATGTACCACGTTCACCGTCGTAGGAGAAAGATCAGGCCGCGCAAAAAAGTGGCTGGTGGCACTGCAGCCACTGAGAGGAAAAGTACAGGAGACTCAGAGGACTGGGAGTTCTCTACACTTGTTGGCTGGAAGTTCCATAAAAAGGAGAGATCCTCCGATAGTTTCCGCCGTCGCCGCTGGATAAGGAAGATGGCTCCTTCTGATCGAGTTGGGGCTTCTGCCATCTTTAAACTGGAGGGGTCGCTGGGAATTGATACAGAAGGAAAGGGGGATGACAAAGGATCCAAATCAGACGCAATTAACTTGCTGGATGCCAACACACCCAATGTGTCATGTGTTTTTGACCAGGGCTATGAATACCACCTACGGGTCTACGTTTACCAGGCCAGGAATCTGATGGCCTTGGACAAAGACAGTTTCTCAGATCCATATGTACATGTATCATTTCTACACATGAGCCAGACCACAGAAATCATCAAGGCTTCCTTGAACCCGATGTGGGATCAAACCCTTATATTCAACAGAGTGGAAATCTATGGTGACCCTCAAACGATCGCCCGTGACCCACCGCAAGTTGTGCTGGAGATTTTCGACAGTGACCAAGTGGGTAAAGATGAGCTGCTGGGAAGAAGCACCTGTCCGCCTTTAGTGAAACTGGACCCTGGCATGGACACACCTCCGAAACTGCTGTGGCGCCCTGTCATTCACAAGGGAACGCCTGCTGGAGAGGTGCTGGTGTCAGCTGAACTGATTCTAAGAAACAAGACTGGTGAGACTGATCTTCCTCTGGTTCCCCCCAAAAGAGGGGACGAACTGTACATGGTTCCTCAGGGGGTCCGTCCCGTAGTGCAACTCACTGCAATAGAGATCCTGGCCTGGGGATTGCGCAACATGAAGATGTACCAGTTGGCACCTGTCTCCTCCCCGAGCCTGGTGGTGGAGTGTGGAGGAGAGAGGGTTCAGTCTGCGGTCATCAAGAACATAAAGAAAAGCCCCAATTTCTCTGGAAACGTTCTTCAGTTAAAAGTGCTCCTGCCTAAAGAAGAGATGTACACGCCTCCAATTGTGCTGAAAGTGATCGATCACAGGCCGTTTGGGAGGAAGCCTGTTGTAGGGCAGTGCACCATCAACTCACTGGAGGAATATCGATGTGACCCCTATGGCACAGTGGCTGAAGTGGCAATGACATCTAAAGTGGCTTTGATGGCGGCTGCCCCCCAGGAGCTCCACATAAACATTGAGGAAAGGCCTCTTCTTGAGACTCAGCTCATGTATGGCATCTCAGCAGCTGTTGACAAAATGGCCCCATCCAATTCACTCAGTCAAGAGAAGGAAAAAGAGACGATTGACTGGTGGAGTAAGTTTTATGCTTCCATTggagaacatgaaaaatgtGGCCCATATCTTCAGAAAGGATATGACACCCTGAAAGTGTTCGAAAATGAACTGGAAAATGTTACTGAGTATAAGGGGCTGACTGACTTCTGCAACACCTTTAAACTGTACCGTGGTAAGACtgaggatgatgaagatgacCCCACGGTGGTTGGAGAGTTCAAGGGCTCTTTCAAAGTCTATCCACTGTCAGATGATCCGGCCATTCCCTCGCCTCCACGGCAATTTAGAGAGTTACCAGACAGCGGACCACAAGAGTGTGTGGTCAGGATCTATGTGGTCAGAGGAATTGACTTGCAGCCCAAAGACAACAATGGTTtgTGTGACCCATACATCAAGATTTCTTTGGGAAAGAAGATTGTGGATGACAGAGATAATTATATACCGAACACTTTGAACCCAGTGTTTGGAAGaatgtttgAGGTGTCCTGCTTCCTACCTCAGGACAAAGACTTAAAGATCTCTGTGTATGACTTTGACCTGCTCACTCATGATGAGAAAGTAGGAGAGACTGTGATTGACCTGGAGAACCGGCTCCTTTCTCGTTTTGGCTCCTACTGTGGTCTACCGCAGACGTACTGCACATCTGGCTTAAACCAGTGGCGGGATCAGTTGAAACCATCCCAGATTCTCCAGAATGTTGCACGCCTGAAAGGAGTATCTCCTCCTAGATCAGAAGACAATGGAAACACTTTAGCTTTCAATGGCCAAGAATATCGCCTTTCGGACTTTGaggCGAACAAAGAGCTTCACCAGCACCTGGGTCCTGCCACTGAGCGGATCTCGCTCCATGTTCTCCGCACACAGGGCCTGATTCCAGAACACGTGGAAACCAGAACACTCTACAGCACCTTCCAGCCCACTCTCTCTCAGggatgTCTTCAAATGTGGGTCGATGTTTTCCCCAAAAGCCTGGGACTTCCTGGACCTCCTTTTGATATATCCCCACGCAAGGCAAAAAAGTATGTTTTGCGGGTAATTGTTTGGAACACTACTAACGTCATTTTGGATGAAACAAGCATCACCGGAGAGCGTATGAGTGACATCTATGTGAAGGGCTGGATGCCAGGCAAGGAAGAAGACAAGCAGAAGACTGATGTTCACTATAGATCTCTCGACGGCGATGGAAACTTCAACTGGAGGTTCATCTATGAGTTTGACTACCTGCCTGCTGAGCAACTGTGCCTTGTTTCTAAAAAGGAACACTTCTGGAGTCTGGACAAAACTGAGTTTAAAATCCCACCTCAGCTGATCATTCAGATATGGGACAATGATAAATTCTCACTGGATGATTACCTTGGGACGGTCGAACTTGACCTGCACCACCTCATCTCACCTGCTAAAATGCCTGAGAAGTGCAACCTGAAAATGCTGGAACAAGCAAAAGCCAGTAAATCGCCACTGAAGTTTGACAGTTCAAAGTCCCTATTTGCCCAGAAATCGGTCAGAGGATGGTGGCCTTGCTACATTGAAAAAGATGGCAAAAAGGAACTTGGGGGGAAAGTGGAGATGACACTGGAGATAGTACACGAGAAGGAGGCAGAGGAAAGGCCAGCAgggaaaggcagagaagaaccCAACATGAATCCAAAGCTGAATCCTCCCAACCGACCTGAAACGTCATTTTTCTGGTTTACTAATCCATGCAAGACCATGAAGTTCATTGTGTGGCGGAGGTTCAAGTGGCTTTTCATTGGCCTGCTCTTGTTAATCTTAGTGCTGCTGTTTATTGGGATCCTTCTCTATTCATTACCGAACTACATTTCAATGAAAATTGTGAAGCCTTTTCAATGAGATGAACCTGTGTTTCAACGAGTGTGGCGATGGATAAGCGACAAACCAAGAGAATATAGGTTTTATATCTACAGatcaaaagtattttaaaatgccAGCaactaaatgtttaattttaggtTCCTAGATTACATATTTTAGCCAATTTTTATGGAACTAATTAGTCCAGTAGTCTGTTACATAACCCAACTGGTTCACTACCATCTCAGCTCTTTTACTGTCAgtcacatttcacatttctgaCACCTGTATGCAATGTTTACTGGCTCCATTAAGCCACATTTCAGATtttatatttcaacttttttctGTGATGCATAATCCCAGTCAGAAAGGGTTGGTACAGTATGGgacatgcaaataaaaatgcagtgtttttcgcattttattttacttttatttcattgcagacagtatgaacccaatatatttCCTATTTTGTCTAATTTATATCaccttcattttatttgttaaatcaATTCCTGCATTTCAAGCCTGCATCACATTCCAAACAAAGTTGGGATGATAAAGGATTTACCTCTTTGTAATGTTGCCGTTACTTTTTACAATGATTAAAAGACGTTTGGCACCAAGGATACCAAGCATTCAAGTGTTTCACatgttattttgtgttataataaaagtcaagtcaagagttaCAGACTGACAGAGTAAAGCAGAATTACATGTCCaggaaaacatgaaaacataaaacGAGAATAATCTTAATGTGTGTGGTGAGGATATggtgcagagatatgtaacatGCTTTGACATATAGGTATTCACAATGTCAGTAACATGCAAGGACAGTGAcgaatacagtattttagcagTAAATATTCCTGATAGAATATAAGTAAATACAGACTGGGAGCATTAGTAGagaggagtgattttttttttttgtttttttggttgacCAAACAAAACATGAATTATCTTTGGTTTATGCTGCAgtgaaaaaaagtcaaattaaataatgtgtgtaataataatatatggatgtggtgtatgaaataaatatacatttcttAGTGTTTTGAATCAGTTCCTACAATAAAAGGCTTACatcata

Function

GO: NA

KEGG:

id description
K22125 MYOF; myoferlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49807 lncRNA upstream 7033 16937012 ~ 16938031 (+) True G36959
XR_002649885.1 lncRNA upstream 78110 16863070 ~ 16866954 (+) True LOC103038048
TU49734 lncRNA upstream 107100 16836526 ~ 16837964 (+) True G36915
TU49715 lncRNA upstream 152464 16790670 ~ 16792600 (+) True G36899
TU49716 lncRNA upstream 153808 16733612 ~ 16791256 (+) False G36899
TU49805 lncRNA downstream 22151 17020266 ~ 17020567 (+) True G36957
TU49816 lncRNA downstream 24653 17022768 ~ 17023415 (+) True G36962
TU49818 lncRNA downstream 26716 17024831 ~ 17025124 (+) True G36964
TU49804 lncRNA downstream 28072 17026187 ~ 17026931 (+) True G36956
TU49823 lncRNA downstream 59389 17057504 ~ 17058002 (+) True G36969
XM_007251304.3 mRNA upstream 1670 16929511 ~ 16943394 (+) True tubgcp2
XM_022669202.1 mRNA upstream 192861 16715891 ~ 16752203 (+) True LOC103044975
XM_007255112.3 mRNA upstream 192861 16715892 ~ 16752203 (+) False LOC103044975
XM_007255119.3 mRNA upstream 417817 16407964 ~ 16527247 (+) True nrbf2
XM_022669436.1 mRNA downstream 4548 17002663 ~ 17040957 (+) True sun1
XM_007251290.3 mRNA downstream 49469 17047584 ~ 17054418 (+) True LOC103034053
XM_007251289.2 mRNA downstream 70821 17068936 ~ 17079779 (+) False LOC103033077
XM_007251287.3 mRNA downstream 70825 17068940 ~ 17079779 (+) True LOC103033077
XM_007251284.3 mRNA downstream 84198 17082313 ~ 17092610 (+) False LOC103032462
TU49230 other upstream 1504911 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 2154231 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 2481425 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 4242008 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 4379093 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 2267 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 2267 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 4325 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 203382 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 234764 17232879 ~ 17234550 (+) False cby1

Expression Profile