RNA id: XM_022669245.1


Basic Information

Item Value
RNA id XM_022669245.1
length 3310
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC103046263
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17992067 ~ 18015094 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TcagtattagagagagagagagaaagagagatagaggggtTGATCAGTGAAACAACATGAGGTTTAAAGTcctgctgtgtctgtgtgtcctgAGCCCAATAAAGCTGGTCTTTTCCACAGAAATTGTTGTTCCTCTGAGCTACACGGCGATCCTCCCCTGCTCTTTCCCTCTCGAACTTCCAGCAAACGAGAAGTTCCTCGATGTTACCTGGTCCTTCAGAGGTTCAGTCATTGCATCCATCAACCACACAGACCCAGGCTTCAACCTGGACACCTCCAACCTCCTCAACGGCTCGTCTCCCCTGACTGTATACAACACCACCCCACACCAACAGGGGGTTTATGAGTGCAGTGTGAACAGCAACGGGACCGATCACTACAGCAATGTCACTCTTACAGTACTGGcTGCCCCCTCCGTGTCTATAACTTCTCCAGAGGTGGTGTTGGGTCAGGAGAGTGTAatagagtgctgggcaaaaagcttCAGTCCTCCACAAATCAGCTTCTCCTGGACTCGAGCAGGGAAACGCTTCAGACCTCCTCAAAGGTCAGAGGGCATGCTGGCAGAGGACGGTCTGTATGAGGCGGTCAGTCAGCTGGTGTTCGTCCCTGAACTCCATGACCGGAACATCACTTACAGCTGTGTGGTTCAGCACGAGGAACTGGAGAAACCGCTGGTGAAGAAGTTCAAGCCAAGCATCATCATCCTCCCTACAGTCAGTCTCTCCATCGTTCCTCCTGCCTCTCGCTCCTCCCCCCTCACCCTCGCCTGTGATCTCAGAGGCTTCTATCCAGAGAACATCTCTGTGGTCTGGGTCCAGAACAGTACAGTCCTGCCTGAGCCTCCACTGACCCACCTGAACAGTGATGGATCATACAGAACCCGCTGGTTCCACACGCTGAGTGCGGAGGAGAGGGAGCGGGGCGGAGCCGTGCAGTGTGTGGCTCATCAGCCCCACGTTTCACAACCAGCGTCCAGCTCCATCGACCTGTCAACCATTGACCCACTGGTGCGGGAGCTGGTTCTGAGCAAATCAGCAAAAGCATCAGTAGCCATGATGATCATCTCACTGATCCTCGTCCTTCTGCTCTGCTTAGGCTTCTCCTGGAAGAGAAGAGATGagaagcagaaaagcCTGAGTATTTCTGCGATCATTCTGCCCCCGCAGTTGGTGGTGGGCCGGAAAGGCCGGGTCACCATCAGTATAGAGGGCAGGAGAGCAGACCGGGTCCAGACTGTGTGGTTCCTCAACAACATCCCAATAGCAGACACGTCTTACTCCGaaaaaaaaagcttgagtcCGTCGTACTCCACAGGTCACACCCCCAGGATTTCCCGTGTGTCTCTAGTGTCTGAAAAATCCTCCCTGCTTCCAGCCACCGCTCCGGGGTACTACAAACTGCACACCCGGCATCCTCTGCTCTCCACCGGCCCCATCAAAcagctcctctcctccttcaccTTCATCCCCAACCTGTCCATCCACAAGGGGGCGGTGTTCAAATGCCAGATATCctacaaaggcaaagacaagaTAGTGATGGAGAAAGTGTCTGACAAGTTTACCATCCTGGcCCTGCCTGAAGTTTCAGAGATTCAGCTCTCAGAACCCAACGAGGTAACAGGTATCGTCACTCTGACTGTGACGGCGTCCCACTTCCATCCGGACGTCATCACCTTCCGCTGGTTCTGCGAGGGGGGCGAGCTGTGCCCGGTTGCTGCCCCCCCAGGCCTCAGTGCTCCTCGCCCAGATGCCCAGGGCTTCTTCTCAGCTATGAGCCAGTGCAGACTGCCCAAAGCCGAGCTGGAGAGAGGAAGAACCACCGTCTGGGTCACCATCCACCACATGTCCCTCAAACAGCCAATCACTCGCAAGACCAGAGGGTTCATAAAGAGGCCTACCGTCTCAGAAATCCACTGCACTCCATCTTTCCCCGACCAGGGACCTCTGACCCTGACCTGCGACATCTCAGACTTCTACCCTCCTGATGTCTCTGTTAAATGGCTGAGGAGAGGAAGGAACGAGGGAGATGagcaggaggtggaggaggcagGAGCAGAGGGGGAAGAAGGAGTTAAGGGGGCAGCAGAAGTCTGGGGGCCGATCCAGACTCAGCCGAGGGCGTTCCGGGCCACGGCTCTCCTGAAGGAGGTGGAGAACGTGCTGAAGGAGATGGAGGAGGGTGGAGAGATTGTGTGCAGGGTGGAGCACTGTGCACTACAGGAGCCCGTGGAGAGAGTCTGGAGGAAAAATTGCATGGTggctccctccatccctctctctctgtctgtgaaCTGGAGGAATGACGGGGTTGGCGTGTTCTCCCTGTGTATGTCCGCTGGTGTCCCTCACCCTAAGATGCTCTGGGCTGCTGGCGGTTCCTCTCTAACACAGCTGATCtccagagagaaggagaaggaggcTGAGAGCGGAGCGAGGGAGCTGCTGAGCGTCTGTGCTCTGGTGAAGTCAGCAGGACCTCAGAGATCAGAGCCCCACCCACACAGTCGCAGGAACGGACATCTAAACGGCTCTCAGTTTCCTGTGTTCTGTAATGAAGTGGAGAATGGACACACTGATCTGAGGGAAAGAGAACAGGAGAACCACACGGAAACAGCTGAAGAGAAATGGACACAAACCTCAGAGGCAGAAACTgaagatggagagacagaaccGGAGTTCTCCTACATAAACACGGTGAACGTGAGGAGAGAGGGGCGGCGGGGGGAGAAAGAGCGCCTTCGAGTGGTTGTGGAGATAACCCATCCTGCACTGAGCCTGCCTGTGTACCGCACCTGGACAGagcctgaCGAGGAAGTATCGTCCTAATGcatcaacattaaaatgtttctccatgtgtttatttatactgaatataaaattattattatctaaacctatttttttaactttaccatttagcattttcattttctttttttttttcaagtataaTGTTCCAGTTTTCCTGCTAATAATGTAACTTCTGTTACAAAAGTACCAGTAATGAAGTGAGTCTTCATAAAGCCTCCAGCGTTTGGACTGAAGAATGTTGAGAAGCTCAGCAGCTTGGGTTCCTCCCCTGCTGAAATGTTGTGGCATGTTGAAGGAATTTATTTCCTTCAGCAATATTTAAAATGACTGTGAGGATACAGTGCAGAATATCAGATATGCAGATATCAGATGTATtatgttgttttgtacataatggtataaattaacacaaattaaCTCTGTGATATGTTGTCTGTGTAAATAAACTGTCTACATTTGCTACCTATCTAgctaaaataaaactgtaactACAA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50357 lncRNA downstream 196090 17789954 ~ 17795977 (-) False vps25
TU50339 lncRNA downstream 283462 17705734 ~ 17708605 (-) True G37333
TU50307 lncRNA downstream 436145 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 497652 17488885 ~ 17494415 (-) True G37298
TU50502 lncRNA upstream 111440 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 112160 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 122855 18137949 ~ 18139122 (-) True G37449
TU50509 lncRNA upstream 125698 18140792 ~ 18141076 (-) True G37450
TU50510 lncRNA upstream 126913 18142007 ~ 18142377 (-) True G37451
XM_022669442.1 mRNA downstream 5578 17972588 ~ 17986489 (-) True LOC103023915
XM_007248697.3 mRNA downstream 21047 17961930 ~ 17971020 (-) True ppp4c
XM_007248693.3 mRNA downstream 31777 17941850 ~ 17960290 (-) False LOC103023166
XM_007248698.3 mRNA upstream 27948 18043042 ~ 18056729 (-) True aldoa
XM_022669248.1 mRNA upstream 85472 18100566 ~ 18117853 (-) False LOC103046869
XM_022669247.1 mRNA upstream 85472 18100566 ~ 18117852 (-) True LOC103046869
XM_007248722.3 mRNA upstream 107927 18123021 ~ 18126382 (-) True LOC103029702
XM_022669249.1 mRNA upstream 127723 18142817 ~ 18160060 (-) True LOC111192381
XR_002649889.1 other downstream 196081 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 287044 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 287044 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 287044 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 338282 17584050 ~ 17653785 (-) False LOC103025753
XR_002649891.1 other upstream 267396 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 557597 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 618484 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1803174 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3858226 21873320 ~ 21878377 (-) True G38338

Expression Profile