RNA id: XR_002649891.1


Basic Information

Item Value
RNA id XR_002649891.1
length 5201
RNA type misc_RNA
GC content 0.48
exon number 29
gene id LOC103047479
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18282490 ~ 18317957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAAACCACACCCTGCTCAGTGGTTGAACCTGCCGAGGGTTCAGGTGAGCCGCCCGGAATGAAGTTCAGGAGCAGGAGCGGACTTCCTACTCGGTGCACCGCGGATTCTGGACTTTACTGGAGTTTATTGGAGTTTAGAAGAGAGTTTCTCTCTGTATGATGATCGAGCTGGAGGTGGAGACGgggggaggaagaggagaggggTTAGTGAAGACGGACAGAGAGCTGATCAGTATTCCGGATGTGATCAAGAAACGCGTGTGCACCACGTTTGTGGAGGATTCGTTCAGTAATGGTCATCTGTGTCAGTGCGGTGGCTCGAGGGACAGTCACGCCACGGTCAGTCTGAACgattacttcagcagtgctatcgtCAGTCACTGGGACAGCGCTCTGCACTCCTCTGAGGCTCCTACTGACGCTTTCGGAGAGGTGGAGTTCGGCGGGGTCAGCAAGAGGCACAGCAATTTCCTGCGTCTCTCCTCTGATACCCCTCCTGCTACTGCCTACACCATCTTAACCAGTAACTGGGGTCTGCCGAAGCCGAACCTGGTGCTGTCTGTGGTTGGTGGGGTTGGAAGGTCAAAGGTGAAACCCAAGCTGCGAGAAGTGCTCAGGCAGGGTCTGGTCAGAGCCGCGCAGAGTACAGgagCGTGGATTCTGTCTGGAGGACTGCGAGAGGGCATTGACCGCTGCCTTGGAGAGGCTGTGAGAGATCACACAACAGCTGCATCCTCTGACTCTCTCACAAAAGTGGTGGCTATAGGCGTTGCTCCGTGGGGTCTGGTTAACCTGCGGGATGAGCTGGTCAACCCAGAGGGCAGTTACCCGGCCGGATACTTTGTTACGAACACGTCTCGGGACTCGTACTGCCTCGATACCAATCACCAGGCTTTCCTCCTGGTGGACGATGGGAGCACCGGTCGCAGAGGAGGCGAGGCCCGCTTCAGAGCTGGCCTggaaaactacatttcccagcagCGCACCGGCAAGCTGGGCAGTGGAAGCATGGACATCCCTGTGCTGTGCACACTGGTCTCGGGTGAGCTTTACATGCTTGAGAGGCTGGACCTCTCCCTGAAGAAGTGTATCCCCTGGATGGTTCTGGCTGGATCAGGGGGGCTGGCTGACCTGGTGACTGATGTTCTGGAGAACGTCGCTGCTGCCCCTGTTTTGCCAGCTGGAGGGGCAGAAGGTGAGGGAGAGGCAACGACCAAAATCAACCTCAGAGAAAGAGTGGCGGAAAAAGTAGTGAAACACTTTCCCTCTGAGCCGGACGTGGACAAGCTCGTGGATAAGCTTCTTAATGTTCACAAGAGCCAAGATCTGATCTCCATCTACCATTTAGAGCAGGAGGGTCCAGAAGACTTTGATACCGTTCTGCTGAAGGCTCTAGTCAGAGcgAGTAAGCAGCGCCTCTCAAGTGATGCCAGCCTCAGCACAGAGGAACTGAAGCTGGCTGTGACCTGGAACAGAGTGGACATAGCCAGGAGTGAGCTCTTCACTGGAGACATCCAATGGAAGAACGAGAGTCTGGAAAGCTTCATGACCGACGCCCTGGTGAACGACAAGCCTCAGTTTGTGCGCCTCTTCATTGAAAATGGCCTGAATGTTCAGGAGTACATGACGTTCGGTCGTCTGGAGGAGCTTTACCGCTCGATCTCGGACAGCTCGGTGGCCTACACTCTTCTACAGCGCCACCTCTCGGAGCGGCAGGGTGTGGCCGGCACCGGCTGGCCTGCTGCAGATCCGGCTAAAGGACTGACCCTGTATGAGGTGGCTCAGCTCCTGGAGGACTTGCTGGGTGATGTGTGTCAGCCATTCTACGATGACAAGCTGAAGATACAGGGCATCACCTCCAGAAGAAAGACCATAAAGaaACTGACCACAGTCTTACAGGAGGGCGAGTATCGACAGCAAAGGTGCGTTTTCCCATGGGCTTCCCTCTTCACCTGGGCTGTGCTGCAGAACCGCAGTGAGATGGCTGTGTTCTTCTGGGAAATGACGCCGGAGTCTGTGCTCAGCGCTTTGAGTGCCTGTAAGCTGCTGAGAGAACTCTGCAAGCTGGAGAACGAAACTGAGACCAAGCATTCCCTGAAAGAACTGGCCATGAAATTTGAGAACTTAGCACATGACGTGTTCAGTAAGTGCTACCAGAGCAGCGAGAGTCGATCCTTCGTCCTCCTGAAGAAAAAGTCGGTGGTGTGGAGAGGAGCTACGTGTCTGCAGATGGCCATGGAGGCGGACGCTCGACACTTCTTCAGCCATGATGGCGTGCAGACTCTGTTGTCTCAGATCTGGTGGGGAGATATGGACAGAAATACAGAGAACTGGAAGCTGGTCCTCACTCTGTTCATCCCTCCTCTCTGCTACACCAGCCTCATCTCCTTCAGagAGGTAGAGGAGGCGGAGGATGGCACACCTGAAGAAGCCCCCAAGGCCAGGGATATAGACTGGCTTTACGCTGAAACCGTCTTCTCTTTCGCCGACATCAAGCGCATtcagaCAAAACAAGAGGAGTTGAGATTTACCCCAaaaggCAATCCCACGAAGAAGTCCCCTCAGAAGCAGTGTTTCCTGCTGTCTCGTTGGAAGCAGTTCTGGTACGCTCCAGTCACGGCGTTTCTGGGCAACATGTTGATGTACTTCCTCTTTTTGCTCCTGTTTGCTTACGTTCTGTTGGTGGACTTCAAGCCTCCGCCCCCCAAAGGCCCGTCTCCGATGGAGCTGCTGCTGTACTTCTGGGTCTTCACCATCGTATGTGAGGAGATTCGAGGGACGTTCTTCATAGGCAACATGACTGTTCGCCAGAGGATACGGCAGTACACTCAGGACCTGTGGCACAAGTGTGACCTCATCGCCATTACTCTTTTCCTCATTGGTCTGTGCTGCAGGATGTTCAGGCGCTCGTTCTGGTTCGCTCGTGCTGCTCTGTGTCTAGACTACATGGTCTTCACCCTTAGACTCATCCACATCTTTGCCATCCATAAACAGCTCGGGCCCAAAATCATCATTGTGGGCAAAATGATGAAGGATGTGTTCTTCTTCCTGTTCTTCCTGGCTGTGTGGATGATGGCCTATGGAGTAGCCAATCAGGGCCTGATCTACTCCTTCGACCCGAGTGCTGATAGGATACTGCGTCGGGTCTTCTACAGACCATACCTGCACATATTTGGTCAGATCCCTTATGAGCAAATGGACTcgggCTTTGAGTGGAATGTAACCTGCACAACAAATGTAACGGAAATTGACGAGAACATGGAGCCGTGCAGAGACACCCGTTATAACTGGATGGTGGTCATCTTACTCATGATCTACCTTCTGGTGACCAACATCCTCCTCATCAACCTTCTCATCGCCATGTTCAGCTACACCTTCACGAAGGTCCAGGAGCGCAGCGACGTCTACTGGAAGTTCCAGCGCTTTAAAGTCATCATCGAGTACCATTCTCGCCCGTGCCTCGCTCCGCCCTTCATCATCTTCTCCCACTTTCACCAGTTTATCAAACGGAATATCCGCAAGGTGCCCTCAGAGAAGATCCACCAGTTTGCTGTAGACCTAATTGATAAGGCCAACAACAGGATGATGACCTGGGAGAACATTCAGAAGGAGAACCTCCTGTCTGCTGAGGGCAAGAAGCAAAGAGAGAGTGAAGCTGAGAGGCTGAAGCGCATGTCTGTCAAGGTGGACGGGGTTCTGAAACAGACGGCTGAGATTAAGGATGTTGATCGTAGATTACGAGTGCTGGAGTCAGAGatggaGTTCTGTTCTGCTACTCTGCTGTGGATGGCTGATGCTATGTGTCAGAGTGGGGTACTGAAGGCAGCTAAGCCTCCTCCCACACGCAAAGtaaATCCCTCCAGTCTGGAGAGCTGAGCAGGGATTCTTCTGTCCTTCTCTCATCTTTCATCCCTCCTTCATCCCCATCTTATCTCCTCATGCGCACAAGGACACGTCAGGTTCAGCAGGGTGGAGGCTTTCTGAACAGCTATGAAAACTCTGAATGTGCCAAAACTCCTTCTGGAGCCACTGAAGAAGCAGCTGACTGTTCAGCGCTGACAGTGTGACTCTGTACCTCAACACTTTACTCTCACTCATGTTTACATTCTGTTCTAATGTATTGAAAGAATCCAGTGCTGTTACTGTGTTCAGATACTCAGATTTAAAGGGGAATTTTACTGCACTGTTTTTCTAAACTCTGAACATGTTCACAGTgggggtttggtgtgaaattgcACAGTGATGGTGGTGAATAGTTCCAGGCAATAGTAACATTCTAGTTACTATCAAACTCACCAGTGAACCTGTTATAGGGACTATTTTTAGGGACAATTTTTTAGGGACTATTCCGTAACATACAATATGGGGCTTAAAAGCTGACGTAAGTATTTGAAGCTGCATTttgtatattaaaattaaattttacataACTTTTAAtcaagttaaaatattaaaattctgattcatacattttaatatccaTATGTTCAAATCTGTCGGCCAGGTGTTTCACCTTAATTTGTGaattttaaaccaaaaatactgttaaaattaaaatctataaattacagcattacaattttttttgtagttactataaataatgatgtatttataattattaattaattagttttcagcatctactataatttatttagtgtttacCATGAATGATTTATTATTGTATGTACTGTGAATAGTTGAGTTTTTAGTATCTACTGAAGAATTGTTTGGTGTCACGTTATTTTAGTTATTGCATTcaatatttcacatttatttatcaaaatgatcaaattattTTAGCAAAGATCAGGTACATTTAATTCAGATACAAAATGTAGACTTAAATTTGTACTTCAGCTTTTAAACCCCATACACAGTGACTTGCATTGCATGTATCTCTCCACCAAGGTGGTTAACCTGTGCAGTTTTACAGGATTTTTATTCCTATATTCTTCTGAGAGTTGTGTTATCTCAGACATCAGGCAGTGTGCATTTAGTGTAACAATGTTTTATAGAGGTAcctttaatttaagacatttttaataattctgATGGATGTAAAACTTTGTTTTATAGGGTTTTATGGCCGTTGGTGGGGTTTGTAAGGGTGTTGTTGGGATGGTTATGGTGTGTAGTTTAttgtgtaaatgattacagttgTATTGATGAATAAACTGCTGCTAAACTCCATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50518 lncRNA downstream 93046 18188473 ~ 18189444 (-) True G37459
TU50517 lncRNA downstream 94482 18187049 ~ 18188008 (-) True G37458
TU50516 lncRNA downstream 95579 18186368 ~ 18186911 (-) True G37457
TU50515 lncRNA downstream 96200 18185594 ~ 18186290 (-) True G37456
TU50514 lncRNA downstream 111136 18171142 ~ 18171354 (-) True G37455
TU50653 lncRNA upstream 92564 18410521 ~ 18449197 (-) True G37565
XR_002649892.1 lncRNA upstream 93390 18411347 ~ 18418294 (-) True LOC103033820
TU50654 lncRNA upstream 93392 18411349 ~ 18418279 (-) False LOC103033820
XR_454725.2 lncRNA upstream 214659 18532616 ~ 18534771 (-) True LOC103035005
TU50689 lncRNA upstream 229668 18547625 ~ 18547908 (-) True G37596
XM_007248728.3 mRNA downstream 3789 18270382 ~ 18278701 (-) True LOC103031500
XM_022669253.1 mRNA downstream 28656 18242919 ~ 18253834 (-) True LOC103031189
XM_022669252.1 mRNA downstream 41368 18235138 ~ 18241122 (-) True LOC111192383
XM_022669251.1 mRNA downstream 49927 18220871 ~ 18232563 (-) True LOC111192382
XM_022669249.1 mRNA downstream 122430 18142817 ~ 18160060 (-) True LOC111192381
XM_007248730.3 mRNA upstream 30540 18348497 ~ 18358860 (-) False LOC103032028
XM_007248729.2 mRNA upstream 30540 18348497 ~ 18358859 (-) True LOC103032028
XM_022669257.1 mRNA upstream 42615 18360572 ~ 18384405 (-) False LOC103033182
XM_022669256.1 mRNA upstream 42615 18360572 ~ 18384405 (-) True LOC103033182
XM_007248733.3 mRNA upstream 70721 18388678 ~ 18409918 (-) True LOC103033508
XR_002649889.1 other downstream 486504 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 577467 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 577467 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 577467 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 628705 17584050 ~ 17653785 (-) False LOC103025753
TU50696 other upstream 254734 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 315621 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1500311 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3555363 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 5147262 23465219 ~ 23510619 (-) False LOC111192393

Expression Profile