RNA id: XM_022669265.1


Basic Information

Item Value
RNA id XM_022669265.1
length 5144
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC103047794
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18452946 ~ 18498356 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCCATCAGGCGGCGGGTGGAATTGCAGGACGCGGCAATAAGCGAGCGCGCGCGGCGAGAGCGAGAGAACTGCAGCTGGAGACACAATAACACAGCGGGCAGCGCAGTCTGAACCTAACTTGCTATGGACCAGCAGCACGATTTGCTCGGCTCTTCGCCCAACAGCCACTACAACTCCAACGCCATGGCAACCTCCCTCGCTGGTATGACCATCAACGACCATCACCATGGAAACCAGTTCCACAAGGAGAATGGCGTCGCCGTGGGGCACATGGGACCCGGAGATGGTCCAATGAAAGAGGGGTCCGTGGATTCTGCAGAAGCACATGAAGAAGCTCCAGCAGCATCTGCTCCTGCTGAGGCTAATGGGCAGAGTGGAACTTCATCTCCTACAGCTCATCCCAAGACGGACAATGACACTGAGAAACGGGCTCCAGGTAGTGGCAGGCCTCATGCTGCTGGCACTAAGATTCCTGCAATGACTCCTCCTCAGTCAGtgaaagTGGATAtgaagaaaaatggaaaagACTCCCCTAAGACCCCTGAGGCGAGTGGGCAGAGCAGTCCCGGCACCCCTAAATCCCCCGGCAGCAAGGCTGTAGGTGGGAAACCGCCTGCAGGGAAGGAAGTGAAGAAAATAGCGGTGATCCGCTCCACCCCTAAATCTCCCGGCTCTCTGAAGAACCGCTCACCTGCTCCGCTGGCCACCGCTGCCACGCCCATGCCGGACCTGAAGAATGTGCGCTCCAAGATCGGCTCCACTGACAACTTAAAGCACCAGCCTGGAGGAGGCCGGGTCCAAATACTTGAACAGAAGCTGGACTTTAGTAATGTTCAGTCTAAGTGCGGCTCCAAAGACAATTTGAAACATGTCCCTGGAGGTGGCAAAgtCCAGATCCTAGATAAGAAGGTGGACTTCAGCCAAGTTCAGGCCAAGTTAGGCTCTAAAGACAACCTTAAGCATACTCCTGGGGGAGGAAAGGTCCAAATACTTGATCAGAAGCTGGACTTTAGTACTGTTCATTCTAGGTGCGGCTCCAAAGACAATATGAAACACGTACCTGGAGGTGGAAACATTCAAATTCTTGATCAGAAGTTAGACCTAAGCAGTGTTCAGGCTAGGTGTGGTTCCAAAGACAACCTCAAACACACACCCGGAGGTGGAAAAGTGCAGATTGTTCACAAAAAGATTGATTTGAGCAACGTGCAGTCCAAATGCGGATCAAAAGACAACATCCGCCACAAGCCAGGTGGAGGAAACATTGAGATCAGGTCGGAGAAGCTGGAGTTTAAGGTGCAGTCGAAGGTCGGCTCTCTGGACAACATTGGACATGTGGCTGGAGGTGGCCAGAGAAGGATTGAGTCTCACAAGCTGATGTTCCGCGAGCAGGCGAAGGCGCGGACGGATCACGGTGCCGAGATCATCTCTCTGGAAGAGTCTCCTCAGCAGCTCAGCACCGTCTCCTCCTCTGGGAGCATAAACATGACCGACCCTCCGCAGCTGTCCACCCTCGCCGACCAGGTGACCGCCTCGCTGGCCAAGCAGGGCTTGTGATCCCCTTACCATCtttaccaccatcaccacccacccaaacaaccaaccaaccgtAAACATATGGATATACAGAAGTTGACAACTTCATCTCCCCCACTTCATCACTAAAGGATATCACTTCACAGCCCCGCCCACAATGGATAGCCCCGCCAATTAGTGTTAAGATTTTATATTGTgtcatttataatataataacaggCCTGCGAGTGTTCTTATAGTCACACCCCGGGCTGGAATAAGAACCATgtattttcttcatttatttccttttttttggatGTATGTAGACATACTCTGTAGTCCATCATCAACATCAGATTCAGCATTAATATGAAGTATTGGTTAACTCCCGAATTTTTACAGAATGTGAAAAACTGTGGGTTTTGGAAACTGTGGGCATTTGGAAAGTTGGTACTGTAGCTTAAACGGTCTAAGATCAGATTTGGActcttaaactaaaaaaaaaaaaaaaaactacttatcCTGTTCAGATGCAAAGCAGAGAAATAACAGGGTAGTGTAGCAGAAGGAAAACTTTACGTAGGGAGAGATTCAAAGAGTTTGTGGGGGAGAGAATTTCAAAAAGAGTTAAATCACATCTGTGAGATACTTCAAAAAATGTTGAGTAAGATACGGCGGGCTTCGTGTAGGAAACGTGGTATTTGTCAGGCACTTTTCTTACATATGTTCTGTGGATATGAGATGTATTtgatatgaaaaaacaaaaaacatggtTATTGTTGTGCCTGCTGGCAgtcttaagttattttatttcgttttttttttttttttgtcagtgctTCATTGTAGATGCCTCTCCtactgaatttttatttttatttttgtatttcgtTGTTCGCCCACTTTACTGATCACTGAAACTACTCACATTTGTATATCTTGTATCTTGATCATTGACATGAAGCGTACTTACTCACCCTAACACAGTGTATTAGCTGAAGGTTTGGGGAAGACTGAGGCTGCTGTCGGTGTTAACgttgaacatgagatttaatattagtaataatattaatcataGGCCTTCAcagttaccttttttttattttgttgtggcCACATTAATGGTTAAACGTTAATCACCACAGTCCAATcaagctgctgtttttttatttagaactgTGTGCTTTGGTGGAAAGTCAGTCATAGGAGTAAATTAAGTTTTGAACCATTTGAATGGTTATGTTGTACACCTGTGCTGTTGAATTGTGAATGCAACTGGAGTAGTAAAAATAAGTACGATGCCAAGAGTATATATCTAGGAGCTACGATTTTTTGATGATTTgatcatatacacacactgccaaacgtgcttgtgttttattaacttttatctGCTTATAACTTTccctatatataaaaaagcattCATCAAATTATTGCCAAACCATCCTCCATGAGGTCGAATCGCAGTCGGGCCAGCGTCAACATGTATGATGCATCTTCTGCTGTCCTTCCGGCCCTCGTCGCATTGCATGGAAAAGTTGCATTTCCTCTACTAACTGCTTCGACTCAAAGCACAGCTCAGTCCCACACGCAGGGACAGCCGTGGATATTCAATCATACTCGTCCTAGTGTTCGTTTTTCTAATCAGGTAATCAGATAAAAAGCATGAAATAAACAACTTTGCAAGTTTTGAATATGTTcttcacacagagagaaaagagggacTGGCTGCTGAGATTTGCGTCTTAGGCGAACAGGAAGTGGATATGGGAATGTTTTACTTGTGTACAGTTCAAGTTTGTCCGAGTTATCGTTTGTGGGTAAGCTGCTGGTGAAATGTTAAAGCACCTACACttaaatcaaaaagaaaaatcactATTTTAACCAAACTGTTGGATCACTGTGGATCACCGTGAATTCTAGCTGCATGCAGGAAACACGTACGTTTCATTTCTCTTTACCAACTCAGATTTcttcacagtggtggtgaatggaTCCAGACTACAAcacaaatacattcattttaatttatttactgtcaGAACTTACCAGCCAACCTGCATTTAAGACAGTGGCATCAACATGGGAGGGCTAGTTTGGGAGGCGCattgagtgatgtatgggtttagaggtggggctgaagtgagagctgattggctgagctgcagcagcagtgagcCTCTAATAGCAGTGAGACGAAGATGGTTGGATGTCGTCAGCAGGGGtgttattattgattgattgactgattgattgattaatctTCATATTTTGATGTGTCTGCGAACCAAATAACGCGGAAACATCAttctcacctatagcacagttagaCCTGAGATggtgctgcagaggcagaaattaccataaacaataaaagtgatttttaaagCTTAGGAAaggtttttaaaagttttaagcaggactggttgAGGGTTTAGTAGCTCTTTTTAAACACTCATGGTTGAAAAAAATAGATAACTATCTGTTAAGGATTTTTTAGAGCTTTAGACATGTGATTTATCTGATTACAAAATTTCTGATTCACCACCACTGAAAAGGATTCTGATATTTTCTAGACATgcagaaatgtattaaaaaaaatcactggaaTCCCCTTTGGGTGTTCAAAATATATGGATTTTGGTGATGAATTCTCTTTAGAAATACTAAAGGCAATTAGCAAAACTAGCTAAATATGTAAtccatactaaaataaaaagtccACAGCATCCTTTAAAGGCCCAGGGCTTGACTGACTGACCTTTCTAATGGACATGCTCTCAACCAGTGACACTGctaaacccccccccctccatccCGCCTGCAGTGTCGCAGTCTGTCTGCGCTCCTTGCATGCGTTCGTTACACATAGACTAAGTGAATAGCAACTGCATTTCAGCCCCGTTTGGATCGTGCTTTCTAGGATTTCTGTAACAGTGGAAGAAAATGAACCGTCTCCCGTAACTCCGCCCACCCCAAACCCCGCCCCCTTTTATTCAGTGATGGAGGAGCTGTGTAGATAGCGCTAGTATAAACTGTATGTGTACAATGTTTGACTCATCTATTTGCCAAGGAACATGAGGgctgagaaaaataaaaatagcgtAGCAGAGCAGTTTCAGCGGTTGAGCTCGCACCACGGTATTCTGCATGCTAAAGTCGTTCAGTCATTTCTgattttttgattattatttttttttctacacggATCGGCAACTTGTTTCTGAATGTTTTCCCTGGGATGGGGTtcgtgttctgtgtgtgtggtatgttgGGCTACTGGAAGTGAGTTTTGGCTTTAGATTGCtgcagaagaagaaggagaaaaagaaagagaagttgTTGCGTTTAGTATTTGTGAGTGATGAGAGAAGGGTTTCGTGATTCTGAAGTGACCTTGCGAGCAGGCGAAGGCCGGCGGTTCGAGCGTAGCGTCCGGTTCCGCGTCACGCCCCCTGAAACTGGACTGAGGAGGGTTTGCCATCCTGTTGTCACCGACACCGTTCACCTATTTGTACATTTTAGCTTGGGAATCGTGATTGTCAATATcgttctagtgtgttttattaataactgattCTTGTTAATGTATGTGAATTTGGAAATAAAGGATATAAAGGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50653 lncRNA downstream 3749 18410521 ~ 18449197 (-) True G37565
XR_002649892.1 lncRNA downstream 34652 18411347 ~ 18418294 (-) True LOC103033820
TU50654 lncRNA downstream 34667 18411349 ~ 18418279 (-) False LOC103033820
TU50518 lncRNA downstream 263502 18188473 ~ 18189444 (-) True G37459
TU50517 lncRNA downstream 264938 18187049 ~ 18188008 (-) True G37458
XR_454725.2 lncRNA upstream 34260 18532616 ~ 18534771 (-) True LOC103035005
TU50689 lncRNA upstream 49269 18547625 ~ 18547908 (-) True G37596
TU50690 lncRNA upstream 49727 18548083 ~ 18550231 (-) True G37597
TU50691 lncRNA upstream 55993 18554349 ~ 18554604 (-) True G37598
TU50693 lncRNA upstream 64755 18563111 ~ 18563493 (-) True G37600
XM_007248733.3 mRNA downstream 43028 18388678 ~ 18409918 (-) True LOC103033508
XM_022669258.1 mRNA downstream 43029 18388678 ~ 18409917 (-) False LOC103033508
XM_022669259.1 mRNA downstream 43030 18388678 ~ 18409916 (-) False LOC103033508
XM_022669257.1 mRNA downstream 68541 18360572 ~ 18384405 (-) False LOC103033182
XM_022669256.1 mRNA downstream 68541 18360572 ~ 18384405 (-) True LOC103033182
XM_007248735.3 mRNA upstream 5284 18503640 ~ 18512085 (-) True LOC103034677
XM_022669290.1 mRNA upstream 564501 19062857 ~ 19124736 (-) True LOC107197613
XM_022669294.1 mRNA upstream 781630 19279986 ~ 19291010 (-) True LOC103043551
XM_022669298.1 mRNA upstream 832311 19330667 ~ 19340948 (-) True LOC111192386
XM_022669301.1 mRNA upstream 843673 19342029 ~ 19353789 (-) False lrrc45
XR_002649891.1 other downstream 134989 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 656960 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 747923 17692497 ~ 17705023 (-) False cntd1
TU50696 other upstream 74335 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 135222 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1319912 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3374964 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 4966863 23465219 ~ 23510619 (-) False LOC111192393

Expression Profile