RNA id: XM_022669274.1


Basic Information

Item Value
RNA id XM_022669274.1
length 4849
RNA type mRNA
GC content 0.52
exon number 13
gene id plekhm1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18615248 ~ 18640148 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGATCTTCAGTACAGTGTGTAAATTACAGCGAGAGCAGGCCGACCCAGTACTGCTGCTGTTCCTGCTGTCTGTCTGAGTTCATCTGCCGCTCATCTGCTTGTTTTTAAGCTCGGTTAGGGAGACTGGAAGCTGCTGGATTTAATCTAAAACACATTTCCCCCTGTTCTTTCTGAATAAACTTCATTTAGTCCGTGACAGACATGATGAAGTGATGTGATCTGAACAGGAGTCATGCTCGCCACACAGACCGCTGACTCTGTCCCAGAGGCCAAGAATGCCAAGCAGTGGATTAAGGAGAAGATAGCGCAGACGCTGAAGGCCCTGCAGAAGCGCTATGTGACTACAGACGCCGCGGTGACCAGCGAGGATTTGGAGGCCAATCAGCTCTGCTGTGCTCTGGAAGCAGTTTTCATCCACGGCCTGCGGAGCAAACACATCCGCACGGACGGAGCCGGGGCCCGCGGCCGCAAGGGCCCAGCCCTGCCTCAACCCGTGTTCTGGAGCCTGCTGAAGAGCGTTACTCACAGAGATGTGATCCTGGAGCTGGAGGGTTTGAGCTTCATCAACACGGATGTAGGCCGCTGTCGGGCGTGGGTTCGCCTGGCGCTCAACGACGGTCTCCTGGAATGTTACCTGATGTCTCTTCTGCGTGAGGACACCAAGCTCAGTGTGTATTACCAGCCTGGAGCTCTTCTCCTGGACCCTGAGGACCGCGAGGTTCTCCTCAGCCTGCTGCAGGGCCTCGCCTCCCTGGCCTTCACCCTTTCCTACAAATCGGCCGTGCTGAACGAATGGACCACCACTCCGCTGGCCCTCGCCGGCCTGTGCCCCGCCTCTGCGGCTGATGACTTCCAGCTGCCCTCCAGGAGGAAGGAATCCTGGGATACAGCCTCTCAGTCATCCGGGGGATCTTCTTCTGGTGGGTCCGCAAACTCCGATGGGGCTCCTGAGGTGATCCACAGGGGGCTGAGCAAGGGAATAAATGGGGCCGGTGGGGTGCGGACCCCGCTCACAGCGTCTGATCTGAGCCTGGACACGGCCGGGTCCTCCCAGCTGTCCTCCAGCCTCGGTTCTGACGGACCACTGCAGGCGCAGGAGCAGCGGggcctggagagagagagctggagcaGCCATACGGAGCTCGCCCACGAGGAACAGCATAAGAGCACGCTCAGAAAgGGCAGCAGCTCCTCCAGCCAGGATCTGACCAAGGAAGACGTGGACATGGTGAGCCCTCCTTCAGACAGCACCAACACCACCCACAGCAGCAGCGATGAAGACTCTCCCAGACCTTCCTCACCCAACAAacagcacacacctccacctCTCTCCGCAGATACGTCTGGACCTGATACGCCCTCTACTGTTCCAGAGGAGGAGATTACAGCAGAGATTCCATctaaaccagaaccagaaccagaacctgcGGTGGTGACGAGACCTGCAGCCACAGAACATTCAGTACAACAGGAATCTCAATCCAAACCCTCTGTTTCCTCCACCCCTGCTGTTCCCACCAGCACCATCTCTAACTCAGTGACCCCCAGAAATCCTCCAGTAGCCTCTGGTGCCCTCAGACCAGAGGAGAACCCTGGACGCTCCTCTGCCCAGCGCAGCTGCAGCGTCGTCAGCAGGAAAACATCTTCAGGCTCTCTTTTTAATTCTCCGTCGTGGATCTCGGAGGAGGACTTCTATAAGCCAGACCCGTATGGAAGTGGTGATTCTGAAGGGCCCGATGTTTCAGACGTTACTCAGATGAACGGGACTGTTTCTCCTGCTTCTCCTGAACTGGCGTCCCATCAGTCACCACCCTGTGTGGTTCATCGCAGGCAtccagggcTGTCTAACCCGTTCCGTGGCCTGTTGAAGCTGGGTCAGCTGGAGCGCCGGGTGACCCTGGGCATGTGGAAGGATTTCTACTGTGAACTGTCTCCCTTTGAGCTGCGGCTGTACACCGACGCTGAGGAGCGCAGCTGCTGTGAGAACTGCTCTCTGCTGCGCTGTGAGGATGTGCGCCTCTCCTCCGCGGCGGAGGGACGCTTCCGACTCAGTTTCCCAGGCAAGAAGCTGGAACTGCGAGCTCCATCCCGGGGCGAGGCCGAGGACTGGGTGGACCGAATCGTGGAGGCGGTCAATAAGGCCCGACCTGCGGCTCGAGATGAACACTGGGAAGTTCTTCAGGCGTCTCCAGTTTTGGGAGATCGCCCTGGTGACCGAGACAACTCCTCTCTTTCCTCCACACCCTCCAGCCCCGAGAGGGAGCCAGCCGAGCCTCCAGAGACGGATTGGACCCGTCCAGCTGATCCGGAGCCGGACGCTATTAAGGAGGCGGTGGTGTGTCTGGGTCAGGAGGAGCGAGGCTGGAGATCCCTggtcctctccctctctctggagGCTCTCAGAGGTTTCTCTGTGCAGGAGGGCCGTAAGATGCCTGTTTTCAGTCATCCCATCGAGGCCGTCCGGGACGTGGTTCCAGACGCAGCTCTGGGAGGACCGGCCTTCTTTAAGGTTCTGATGGGAAAGGAGACGCTGACGGTGAGGGCCGAGAGCGGGGAGGAGGCGCGCACCTGGAGGAGCCTCATCAGAGGAGCACTGGACTCCTACCTGGAGACTCAGGACGACGGGATGGCAGAGGAGGTGATGTCTCCCGGCGGTGGACAGGGAGGAAATATCAACAGGCTGGTCCAGCATAGGCTGAAGGGAGATGGTGTCCTGCTGCCTTACCTGACCACTGTGCCTACAGAGAGAGGACTGGACGCCCAGAGCTTCAAGTGTGCAGgatgcCCCAGACaggttggtgtgtctttgggtCGTGCCAGGCTGTGTGAATTCTCAGGTCAGTACTACTGTGAAGGCTGTCACCATGGCGACACCACCATCATCCCCTCCCGCATGGTGCACAACTGGGATCTGACCCCACGTGAGgtctcCGGGCCAGCTCTGAAGCTGCTGGCGAATATAAAGCAGGAGCCGCTGCTGAACCTGGACCTCCTAAACCCTGATCTGTTTAACCACACTGAAGTCATGGCAGCAGTCCAGTGCCTCAGGCAGAAGCTCCGCCTCCTCGGAGATTACCTGCTCATCTGCCGCAGTGGAGTCCGCAAGAAAATTGAGGCcaggCTGAATCAGAGGATGTATCTGCTGGAGTCCAGTAGTCTCTACAGTGTGTTGGATTTAAAGGAGATTGCAGATGGTCAGTATGAAGGCTTCCTGCAGTCCCAGATCCAGTTCTCATCCAGCCACGTGCATCACTGTGACCTCTGCACCCAGCGAGGGTTCATCTGCCAGATATGCAACACGGACGACATCATCTTCCCATTCCAGTTCGAAACCACGACCAGgtgtaCGGTGTGTAAGACGGTGTTCCACTCGTCCTGTAAGGCCCAGAATCTGTCCTGTCCTCGCTGTGAACGCCGGCAGAGATACCACGAGAGAGTCCTGCTCAGATAGCTGCATGCTGGCTGCATGTCTGGGTGCCTCGCTCTGACGCCTGCAGACCTgatatttaatgttaatgtgtttattatttttaatgtagtcTTAAGTGCACTTATTTATAGAACTGTAAATACTTCACTCTCTGACTGCGCACTCTCTGAGTGTGCCGCTTAGCTGATGGTATGATTTTAGGGGTGGGGTGGCGAGGTGGTGGGAAATGCTACAACTTGCACTGAGAGActaatgctgctgctttctctgaCTATTGATTATTGACTATAGACCAGATTATGGTCCTGTTTATCTGTCAATTCCTCAGATTGACTCTCAAATAACTGGATTACTATAATCTTTAAACTTCTGTACAGAAACATTCAGAGATTATGCAAGCTTGGGTTTAGAATCACGTGCATTTTGCCAAAGGCACTttcatttgctgttttatttgcaGCATCAGGAGTTTCTCTTCTCACCTCAACTCGGTTGAAGTTGGCTGCCTGTGGgaattttccattccaccttaaataaaaagaaaacagtgcaacagttCTCTACTAGCGCCCTCTGCtgcattatttcttttaatgaattagcataaaaaaatctgaatgagaagcttttttttcacatgtgttattttaaggtaaaatggaaaaatctaCTGCAAGTcaactatttaaggtggaacagaggAAAATTCGCATGAGATGCCAACTTctgccttttatttttttatttatttattttattttattttttctgaagcTGTCAAAAGTTCTGCCACGGATCAGATCACGCAACTCTCCTGCTTTTTATAGACCTTTTTTAAcacttcttttttatatatatataaaaatatctgtTTACAGACCAAACACTAGTCTTAACTGAGGTTAAGCTGTATTTTAATACTTCAGTAGCATTCTAGCTTTGAacttttatatctatttttcaaTGTAAGGAATAATCTTTGATGACTTCTCGTGCCTCTTGCCTCTCGTGTTtcttacatgtttttatttgttctctCATACTGTACAGTTTTCTTTGTATCTTAACTCTATTGtgccaaatataatattatattatatataattattataattatatatatatatattgagatatttaggcTGAGAGCAATTAGTAGGGATAATGTAGTCATTGTCTCTCAGATGGAATAAGTCAGTCAGAAGAGGCTCTCTAGATCTTGCCTATTCTATTGCACTAAACTGGTTATACTGGCAGGGCTGTTTGTGTCCAAGGTTGCCAGTAATGCagtataaaagagaaagaagagatcCACTTCAGCTTCTTCAGTCTTTTTctcacatttaaaatttaaaatgtgtgtatagccctatccggacgggattagtttctcaggggggcgtctgtgataaaa

Function

GO: NA

KEGG:

id description
K23282 PLEKHM1; pleckstrin homology domain-containing family M member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50641 lncRNA upstream 142675 18470159 ~ 18472573 (+) True G37557
TU50613 lncRNA upstream 228596 18386414 ~ 18386652 (+) True G37534
TU50569 lncRNA upstream 297296 18313306 ~ 18317952 (+) True G37501
TU50559 lncRNA upstream 325862 18286903 ~ 18289386 (+) True G37492
TU50541 lncRNA upstream 361476 18243121 ~ 18253772 (+) False LOC111192384
TU50743 lncRNA downstream 5487 18645635 ~ 18707681 (+) False LOC103022762
TU50744 lncRNA downstream 5487 18645635 ~ 18707728 (+) False LOC103022762
TU50787 lncRNA downstream 172591 18812739 ~ 18812951 (+) True G37652
XR_002649906.1 lncRNA downstream 323089 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 574420 19214568 ~ 19214818 (+) True G37735
XM_022669420.1 mRNA upstream 16418 18591905 ~ 18598830 (+) True cd79b
XM_022669273.1 mRNA upstream 31467 18533534 ~ 18583781 (+) True LOC103021833
XM_022669443.1 mRNA upstream 85293 18518908 ~ 18529955 (+) True LOC103021514
XM_007248734.3 mRNA upstream 166045 18420193 ~ 18449203 (+) True LOC103034039
XM_022669419.1 mRNA upstream 271787 18332474 ~ 18343461 (+) True LOC103032559
XM_022669276.1 mRNA downstream 7321 18647469 ~ 18707688 (+) True LOC103022762
XM_022669275.1 mRNA downstream 7321 18647469 ~ 18707688 (+) False LOC103022762
XM_022669278.1 mRNA downstream 7321 18647469 ~ 18707688 (+) False LOC103022762
XM_022669277.1 mRNA downstream 7321 18647469 ~ 18707688 (+) False LOC103022762
XM_007248736.3 mRNA downstream 68837 18708985 ~ 18716376 (+) True LOC103035226
TU50609 other upstream 238903 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 238903 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 501322 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 522337 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 644249 17961940 ~ 17970999 (+) True G37155
trnag-ccc other downstream 257154 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 689220 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 840908 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1517732 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2379021 21019169 ~ 21030797 (+) True G38079

Expression Profile