RNA id: XM_022669279.1


Basic Information

Item Value
RNA id XM_022669279.1
length 3941
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103023065
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18725892 ~ 18806982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCGGAGCGGCGGCGAGGCTGGATCTCTCCCGCAGACCCGAGCGGACTCTCCCCAGCGGAGCGGAGCAGgtatgAAGCGTCCATCCAGCCCGGTGTGTGTGGAGAGCGAGTCCACAGTGGgctcagagctgtgtgtgggtCTCCGGCGTGTGGATGGAGACCCCCGGCCGAAGCGTGAGCGTAAGCAGCGGACGCTGACGCTGTGTGAGGTGTGTAACATCCAGCTGAACTCCAGCGCTCAGGCACAGATCCACTACAACGgaaaaacacaccagcgcaGACTACGGCAAGCCTCCCAGGCCAAAAACAACCgcacagccaatcacagcacagcagGAAGTCCAGTCCAGGGCAGTCCGTTACTGGCGTCCCTGCCGCTCCCCGGTCGGACGCTGCAGCCTCAGCTGGACCTGAAGCACATTCTCCCTCTCAGGATCAATGGCTCCTCCCCCCTCAGCCTCTTCCCTAACTTTAACACGATGGATCCGGTACAGAAGGCTGTGATCAGCCACACGTTCGGCCTGCCTCAGCCAATCAAAAAGAAGCAGATCATCTCCTGCAACATATGCCACCTACGCTTCAACTCTACAAATCAGGCTGAGGCTCATTATAAaggccacaaacacacacgcaaacTGAAAGCCATCGACAACCAGAAGAACAAACAGAGGAgccaggggagagagagagagcgcgagaggaagaaggagagagcgcgagaggagGGGAAGACCGGTCATCCCCCCGCTCTTACGGACAGCGGCGTGTCGGAGacgacagcagtCAAGTGGGACGGACATCCTCCCCACCTGAAACTAGAGAAAGCTCGTACTCAGGGTAGCTCCACCAAGATCACACCCACCTCAAATTCCACGTCTACAGATGCTGGAGCCCCTCAGTCCCCCCAGGTTTCTCCCGGTTCCCAGCAGTCTGGAGGCTCGTGTGAGTCCGTCACTGACCCCGCCCTGAGCTCGGCTTCAGACCCCTCAGACCCGCCCAaagcagaggaggaggagcccgaggctgaggaggaggagccaGACTCAGAGAGCCGGAAAAACTCCAAGCGGAATCTGCACTGTCCCGTCTGCAAAGTGACCGTCAACTCCGGCTCACAACTGGACGCTCATTATAGCGGCTCTAAGCACAAGCTGATGTTGGAGGGTCAGTGCGTGCAGCCTCGGCGGCGGGGAGGGAAGGTGGCCTCCTCCCGCATGAATCCCCGTCCTAAACGCCATGGCAACAAGAACAGTGCCACCTCCAGCAGCCAATCGTATCATTGCGATGTGTGTGATATAGCTGTCAACTCAGAAACTCAGCTCAAACAGCATATGAGCAGCAGGAGACATAAAGACAGACTGGCAGGAAAACCCCCCAAACCAAAGTTCAGCCCCTACACCAAGAGCTCAGCCAGCTCAGTGCTAGCGagcGCAGGATTGGCTGGTCTGATGGGCGGGGCCGGCTCTGCTTTTGGGGGCATGTACCAACCCTACAGCCTCTCCACAGTAACGTCTCAGACCAAATTAGCTCTTCAGAAGGAGCTGTCCAAAACCCTGGCCGCTAGCTTCCTACCTTCACCTTTGACCCCCGCAACCCTGTGCACCATGGCTGCCAACCCTCTGACCCTACGGCACACCCACGGGGCCACCGCCTATATCCAAACCCCCCTGCTTAGCCCCGCCCTCTTTAGACCTGCCCCTGGACCCCTGCGGGCAGCTCACGCTCCAATCATCTTCTCTCCTTATTAGCCCCTCCCAACAGGGACGCATAATCGCGGACTCGTTTCAAaagaaaactttatttaaactttattatGGAGAAGAACTGAAAAGAAGTCATTTAAGAAGAGGTTCTTACGtatcaaatataaaactatgcagctggagagagagatacgCACTGACCAATCAGGAAGAGCCGGTTATTACTCAATCATTATTATTCAATCATCTGCCGCCCAATCATTGATAGAGTTCCAGCAGAAACACTGATCAGCTCGGGCTTAAACGATTTTAGGAGCAATTGTGCATCTTTAATCAGCttcaacttttttgttttaaatgacatttaagGTTTTTTATGCTCCTCCCACAAACATATTCTTCATAGCAACAGTTGCTAgactacagtggcttgcaaaaatattcataccccttaaactcttctttttacattttgtcaccttacaagcacaaacttaaatgcatttaatcGAGATTTATAAGTGAAGGCCAACACagagtagcacataattgtgaattagagtgaaaatcaactcaataaaaatctgaacccctaaataaaatccagtgcaatcaatcgCCTTCAGAAGTCTTAACTTAATAAGTTAATAGAGCTAATCCAGCTGTGTGAAATTTAGtcttagtataaatacagctgttctgtgaaggcctcagtggtttgttagagaacactagtgaacaaagaGCACCATGAGGAccaaagtttaaagcagggttaggtcaTAAAAACATCTCCCAAGCTTTGcgcatcccaaggagcactgttcaatccatcatccaaaaatggaaaacgtATTCTACAACTATAAACCTACCAAGGCATGGCCATGGTTCACCCAAACTGACTGACTGAGCAAAGAGAGACTCAGCTTgagtcagagaagcagccaagaggcccatggtcactctggaggaactgcagagatccacaTATCAGGTGCACTTCAAAATGATGTCCTTTATGAAAGAgaggcaagaagaaaaccattgttgaaagaaagacataagaatactataaaatcttattaaaatacatttaagtttgtggtggtaagaccaaaaaaatgtgaaaaagttcaagggttataaatatttttgcaagccactgtagctGTAACAGAAGTCCAGCTACTGTCGCTAACATTTATTTGAAATGTTAAAACGCTAAACTCTATAATATTAAGTATAATAAATACTTAACAGCATATGTGATactgaaaatgataaaatgctcctaaataagcaaataccagaaattattTATGGATTTTATTGGAGTCAGTTTcaaaccaatattcttcactgcaggtttattaaccctattcatttgattatagcgccaccatgtggagtaatgacaggagtaaagcagtaactttagtaagtcagaATGGAGGGGAGTGAATCTTGGGGAGTTTAGAGTGCCTAGGttccaataaaatattgatatttgacacCACAAATCGCTAATGtatttgaaaatgaaaacaaaagggTATATCGCGATATGAATAATTTTTTCCACCTCTAGTGCACAAATTTAGCATGAACATATCTCATGATCAGGTGCTTTATCACAAATCTTTCTGGTCTCAAGATCGTCTGATATGTCAGCCTCCTCTGGATTGATGATTTAATGAGATTCTGCTGTTCTGAACATCTCACAAGGCTTTTCTGGAATTCTTAACTCATTATAGACTTTGGGAATTTTTGACAAACACCTAAAAGGTGTGCTACAGTTTTTGATGAAGCGGAGAAGGTGGATTTTTTCTGGATTTGTTCTGAAAAGCTCGTCCAGTTTTTGCTCAGGCTCTGGTCAGCCTGTCCGTTCACTACTCTGGTGCTTTCAGGGTGTATCAACTGTTGCCAAGGATACTGTAGTTTCCATTTCCTGTCTGGTCTACTGCGATGGACCATGGGATGGGATGGGTACCTCCTGTCTCCACCAATGAAGAAGAGCCGTTTCCGACAAAGGGAGCCAATgtgatgttttagttttttagtttgtttgtgtttgatcTTTTATAGCTAGTAGTAAAAAGAGAAGTGCTTTAGGCCTATTCTAGTGTTTCAGAAGGCAGTTGCCAAAATCCCTTTACttgatttattaatattgtttgattgctttttatattaaatgaacAGTAGAATagaatgatgataatgatgatgatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50744 lncRNA upstream 18164 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 18211 18645635 ~ 18707681 (+) False LOC103022762
TU50683 lncRNA upstream 84797 18589222 ~ 18641095 (+) True G37592
TU50641 lncRNA upstream 253319 18470159 ~ 18472573 (+) True G37557
TU50613 lncRNA upstream 339240 18386414 ~ 18386652 (+) True G37534
TU50787 lncRNA downstream 5757 18812739 ~ 18812951 (+) True G37652
XR_002649906.1 lncRNA downstream 156255 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 407586 19214568 ~ 19214818 (+) True G37735
TU50915 lncRNA downstream 535117 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 667640 19474622 ~ 19476578 (+) True G37767
XM_007248736.3 mRNA upstream 9516 18708985 ~ 18716376 (+) True LOC103035226
XM_022669276.1 mRNA upstream 18204 18647469 ~ 18707688 (+) True LOC103022762
XM_022669275.1 mRNA upstream 18204 18647469 ~ 18707688 (+) False LOC103022762
XM_022669278.1 mRNA upstream 18204 18647469 ~ 18707688 (+) False LOC103022762
XM_022669277.1 mRNA upstream 18204 18647469 ~ 18707688 (+) False LOC103022762
XM_007248739.3 mRNA downstream 7790 18814772 ~ 18827717 (+) False LOC103035736
XM_022669282.1 mRNA downstream 10870 18817852 ~ 18827717 (+) True LOC103035736
XM_022669283.1 mRNA downstream 22985 18829967 ~ 18865676 (+) True LOC103023371
XM_022669284.1 mRNA downstream 22985 18829967 ~ 18865676 (+) False LOC103023371
XM_022669285.1 mRNA downstream 22985 18829967 ~ 18865676 (+) False LOC103023371
TU50609 other upstream 349547 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 349547 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 611966 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 632981 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 754893 17961940 ~ 17970999 (+) True G37155
trnag-ccc other downstream 90320 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 522386 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 674074 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1350898 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2212187 21019169 ~ 21030797 (+) True G38079

Expression Profile