RNA id: XM_022669289.1


Basic Information

Item Value
RNA id XM_022669289.1
length 3545
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC103023686
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18898912 ~ 18914556 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCGGTCGCTTAGATACTGCAGTCCCGCAGAGCCGCGCTGGAGTTCAGCGCTGAACCCGAGTACTCCTCACTGATACCCGGGTCTAGAGAGCGCAGACAGCGCCCCGACATGCAGACAGACACCATAGAGCGCAGACAGCGGGCTGAGGACACGCAGACAGACTCGACAGAGCGCAGACCGCAGTTCAGCTGCAGGACAGAGCGCAGACAGAGCGCCTGCGGCCGCTGCCAGTCCTGCGCCTACTCTACCCACCTCCAGCACTCAACCCAGTGGCTGAACCGAGCCGGAGACGAGGCTAAACGACGCTTCCTCACCGGCCTTTTACTGCGATGCAGGAGCCTGAAGATCCTGGAGAACCTCCAGAATGTTCTCCAGATAACCTCAGGGAAGGACTTCACTTATTCCAGAGCTCAGATTAAAGCGCAGCTCCCAGTGGAGGGGAGGAACTGGGAGTGTGGAGACAGTGGGAATCTGTGTGGGATGAGCATGATGGAAACCTGGGACTGGTTCATCAGGAGCCCAGACTGGATAAAGTGCAGTTATTTACTGCGGCTCTTCTCGCTGTGCCACTTTGAGCTTCTGCACAGGCTGGGGAACCTGGTCGGGGTCCTCATAGCTCGAGAGAAACGAGGTTTTCTGCACTTTAACACAGaGAATGATGAAGACCAGGGCTCTGTATCAGGATCAATCTACTCCTTCCACACTGATGATCATCCAGAGCTGGATCTTCTGGTCCAGGCGAGCTCGGTCTATGAGCCTGTCAGTTTCCCTCATCAAACCCAACATAACAGTGCCGTGGAGATTCTGGACAAACCACAACCCACAAAGAATTCTATCTGGAGTAAGCAAGAGGAGATAACCTACATAGCTCAAAAAAGACAAGATAGTGACACAGACTCAAACAGCTCAGAGGATCCCGCTCTCATGGTCGTCCCCGGGTCTTCCAAATCCATGTCGGGGGTCAGCCTCCACCGAGACTTCATTGGAGGACTTCCAGTCGATATCAGCAAGAGGATTTTAGGTCTGCTGGACAAGGCCACCCTTCAACACTGTAAACGTGTGTCCCAGCACTGGTGCTATCTAACAGAGGAGGTGCTAGGAGAGATGGAGGTGAAGAAGATGGTGGAAAAAGAGGCAATGAATTTGCAGGGCAGCTCTACCTCTGGAGTTAACCCTGTCTACGCCAGGATCCGAAAGGTCTTAGTGCCCCTCGGGGAAGAAGAGGACGACACTCATCCTATAAAGACTGGCCCCAGTAGTATAAAGGAAGTTGGGTGTTTGGAATCAGTCTATACAGGGGTTAAAACCAAGGCGGTGGAACTGGAGGAGAGGAATGTGTTCTGTGGAGACTTCAACATCCTGATTCTGCTGGACAGAGAGGACCCCAGCAGAGTGATCCATTACAGCGGGGGCCAGATGGTGGCGGTGGGCTCGAAGGACCGTGCTGTGCGTCTGCTGGACGTCACTCAGATTAAAGAAGTGCCGCTATTGATGCAGGGCCACGCTGGCAGCGTCCGAGCTGTGCTGATCTGTGAAGAGAGGGGTTTAATCATCAGTGCAAGCTACGACCTCAGCATCAGGTGCTGGAACCTAAAGACAGGAGAGTGTACCATGCTGCTATCTGGACACATGGGAACCATCACCTGTTTGGACCTCCATGAAGATCTTCTGGTGTCTGGGGCCAGAGACTGCAGAGTTAAAGTGTGGAGCCTCCAGTCCGGGCAGTGCTATGagaagctgaagatgggtcacCGTAAgcctgtgctgtgtgtgaagATCAGCGCTTCTCTGGTGCTCAGCAGTTGTGAGGAGGGCCTGGTGAAAGTGTGGGAGACGGAGACGGCAGATCTGCTAAAGATTATAACTGGTCATCAGGGTTATGTGAAGTGTCTGTTCTTCGATCAGTGGCACATTCTGTCTGGAGGGGCAGATGGGCAGGTTCTGGCCTGGAGCACCAAAACCCACTTTACAAACAGCCTCATGACCTTCCACCACCCAAAGGAAGTGCTCACCCTGTCCTTCCTCTTCCTGCGGGTCATCACCGGCTGTTTGGACGGAAAGATCCGGATCTTTAACTTCCTCAGTGGAGACTGTCTTAGAATCATCAAAATCAGCACCCACCAGAGTCCAGTActctccatacacacacatgacAACAGGATTGTGGTGAACAGCAGTAGTCGTGTGTTGCTGCTGCAGTTCACTGAGCAGCGCTGGGATTACTCTGCTGGACCTAAGAGAAGATCCTGGGCTGCTCTGCATCCTCCTCCTCACAGCAATCTTCATCCTGAACCAAAGTCTTCCTCAGGTTCCTCCAGACCAAAGATCTACAACAGAGACAGAAGAACCGGAACACAGGGTTTTCCTCAGAACACCAGGAGCCAGTCAGCCCCCTGCAGGCAGAAAGCACACAATATTCAGGAGCAGATCATACGCCCGGCCACTCTGTCTCCCAACAACCGAGCCAGAAtcacctccagcagcacagcCACCAGCTCAGaaaagtCCTTGGCGACCTCCAAACATGTCAATGAGACAGCTGTCCAAGAGTATCTGAGGAAGAGAGGCCTCCATCATCCAGTCACCACCACCCAGGTGCTGTTAAAGGTGGTGCGCTCCACCCAGGAGCCCCACAACTGTGACCTGGCCACCTCCAACATGAATCTGAATGCAGCAGTGCGAGATTGCTGGGGTCCACCTGCCTCTGATCCGGTCATGGAGATCCAGACCAAaactccacctcctccacctcctcctctaCCACCTGCCAAAACTCACCACCGGCCACATTCAGCTCCCAAGCCGTCCAATCAGACTTCCTTCAAAGGTACGGTGAAAATCTACACCACTCTCAGAACTCACCCGCTGGATCTAAAGCTTCGACATTCCCTTCACTCCAGAGAAGTTCAATCAAATATTCCCTCTCCGACTTTAATCCGACCCCAGACAGTTCATGAGCCCAAGctcaaacccaaacccaaacccaagCGTCCTCAGACGGTCTGTGGGACACGTACGGTCAGTTCCTTCACCACCACCGCAGAAGAAGACGTCCAGAACATTCATAAGGTGTTCATGAGGAGCGCAGTCAAGCATCCAGGCCGCCACGTCGATTTTGAGATGCCTGGAAATCCCAGAAAATCACACATTCCTCTGGATCCattcagaaaacacacaaacttcCAGCTAAAGACTgattcagagctgcaggagctcCTACAGTCCCAATGCACTGAACTACATCACActcaaaaccacacacacactcaaaaccaCAAGGAGAAGCAGCGCAGAACAGCCTGGAAACTGAAGATCAAAGGTCTGCCACCTAACGACTACATGAAGCAGGGTCAGGTGTATGCTCCAGAGCTGGGGGAGGACATCTACATCtgatatatacaggggttggacaatgaaactgaaacacctggttttagaccacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgtacaTTGAATTTTTCAACTTTCAGagagcttcctcttacagcgtcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50787 lncRNA upstream 85961 18812739 ~ 18812951 (+) True G37652
TU50744 lncRNA upstream 191184 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 191231 18645635 ~ 18707681 (+) False LOC103022762
TU50683 lncRNA upstream 257817 18589222 ~ 18641095 (+) True G37592
TU50641 lncRNA upstream 426339 18470159 ~ 18472573 (+) True G37557
XR_002649906.1 lncRNA downstream 48681 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 300012 19214568 ~ 19214818 (+) True G37735
TU50915 lncRNA downstream 427543 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 560066 19474622 ~ 19476578 (+) True G37767
TU51021 lncRNA downstream 574405 19488961 ~ 19489738 (+) False LOC103039215
XM_015605677.2 mRNA upstream 3061 18883895 ~ 18895851 (+) True LOC103036574
XM_022669287.1 mRNA upstream 20100 18869146 ~ 18878812 (+) False klhl11
XM_007248740.3 mRNA upstream 20100 18869147 ~ 18878812 (+) True klhl11
XM_022669284.1 mRNA upstream 33236 18829967 ~ 18865676 (+) False LOC103023371
XM_022669291.1 mRNA downstream 246988 19161544 ~ 19169082 (+) True LOC103042924
XM_007233558.3 mRNA downstream 256186 19170742 ~ 19182247 (+) True LOC103037098
XM_022669292.1 mRNA downstream 334592 19249148 ~ 19277687 (+) True LOC103043248
XM_022669293.1 mRNA downstream 334592 19249148 ~ 19277687 (+) False LOC103043248
XM_022669295.1 mRNA downstream 379048 19293604 ~ 19311143 (+) True rfng
trnag-ccc other upstream 1540 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 522567 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 522567 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 784986 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 806001 18084916 ~ 18092911 (+) False LOC103046566
TU50913 other downstream 414812 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 566500 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1243324 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2104613 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 2252012 21166568 ~ 21295290 (+) False plce1

Expression Profile